Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86807 * 119.99738 * 2 1 4 4 H 1.48494 * 109.47274 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46845 * 30.00577 * 3 2 1 6 6 H 1.48494 * 109.46904 * 150.00402 * 3 2 1 7 7 C 1.38948 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99575 * 359.97438 * 7 2 1 9 9 N 1.37091 * 119.99963 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99566 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00380 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99817 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47079 * 180.02562 * 12 10 9 14 14 C 1.46848 * 110.99842 * 294.21225 * 13 12 10 15 15 C 1.53039 * 109.52206 * 174.16372 * 14 13 12 16 16 C 1.53127 * 109.30993 * 59.15660 * 15 14 13 17 17 H 1.09001 * 109.55178 * 182.48415 * 16 15 14 18 18 N 1.46500 * 109.49250 * 62.28945 * 16 15 14 19 19 C 1.34777 * 119.99816 * 85.33962 * 18 16 15 20 20 O 1.21282 * 120.00266 * 359.97438 * 19 18 16 21 21 C 1.50694 * 119.99879 * 179.97438 * 19 18 16 22 22 C 1.53008 * 109.47401 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47214 * 179.97438 * 22 21 19 24 24 C 1.53000 * 117.49853 * 243.74513 * 23 22 21 25 25 C 1.53005 * 117.49772 * 175.08731 * 23 22 21 26 26 C 1.53113 * 109.15521 * 302.40448 * 16 15 14 27 27 H 1.09002 * 109.50833 * 297.63006 * 26 16 15 28 28 O 1.42903 * 109.50211 * 177.56174 * 26 16 15 29 29 C 1.46846 * 110.99895 * 170.00213 * 13 12 10 30 30 H 0.97002 * 120.00180 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00571 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46979 * 59.99706 * 12 10 9 33 33 H 1.09000 * 109.47289 * 300.00134 * 12 10 9 34 34 H 1.09005 * 109.46173 * 294.17566 * 14 13 12 35 35 H 1.08994 * 109.46522 * 54.15270 * 14 13 12 36 36 H 1.08997 * 109.50164 * 179.12019 * 15 14 13 37 37 H 1.08997 * 109.50278 * 299.19329 * 15 14 13 38 38 H 0.96993 * 120.00195 * 265.33456 * 18 16 15 39 39 H 1.08999 * 109.47295 * 300.00002 * 21 19 18 40 40 H 1.09000 * 109.47077 * 59.99770 * 21 19 18 41 41 H 1.08999 * 109.47113 * 300.00377 * 22 21 19 42 42 H 1.09008 * 109.46424 * 59.99769 * 22 21 19 43 43 H 1.08998 * 115.54752 * 29.42037 * 23 22 21 44 44 H 1.08998 * 117.49890 * 0.02562 * 24 23 22 45 45 H 1.08999 * 117.49808 * 145.02252 * 24 23 22 46 46 H 1.08994 * 117.50125 * 214.98575 * 25 23 22 47 47 H 1.09004 * 117.49583 * 359.97438 * 25 23 22 48 48 H 0.96700 * 114.00311 * 180.02562 * 28 26 16 49 49 H 1.09001 * 109.45999 * 65.81967 * 29 13 12 50 50 H 1.08999 * 109.46280 * 305.85225 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4403 0.6999 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3703 -0.0022 13 7 6.0505 -3.7553 -0.0026 14 6 5.6968 -4.4389 1.2480 15 6 6.0925 -5.9143 1.1540 16 6 7.5992 -6.0193 0.9014 17 1 7.8781 -7.0671 0.7899 18 7 8.3262 -5.4353 2.0313 19 6 8.5941 -6.1840 3.1196 20 8 8.2329 -7.3409 3.1637 21 6 9.3424 -5.5834 4.2816 22 6 9.5127 -6.6371 5.3780 23 6 10.2730 -6.0275 6.5574 24 6 11.6433 -6.6180 6.8957 25 6 10.4454 -6.8908 7.8088 26 6 7.9480 -5.2577 -0.3802 27 1 7.4380 -5.7171 -1.2269 28 8 9.3605 -5.3030 -0.5926 29 6 7.4987 -3.8014 -0.2417 30 1 -0.4850 0.8400 0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9248 -1.8560 0.8872 33 1 5.9235 -1.8569 -0.8927 34 1 6.2267 -3.9730 2.0789 35 1 4.6223 -4.3610 1.4132 36 1 5.8441 -6.4178 2.0882 37 1 5.5521 -6.3843 0.3324 38 1 8.6147 -4.5100 1.9962 39 1 10.3230 -5.2454 3.9466 40 1 8.7814 -4.7363 4.6763 41 1 8.5319 -6.9747 5.7129 42 1 10.0735 -7.4845 4.9834 43 1 10.1377 -4.9554 6.7003 44 1 12.0033 -7.4405 6.2776 45 1 12.4095 -5.9345 7.2615 46 1 10.4240 -6.3867 8.7749 47 1 10.0168 -7.8929 7.7919 48 1 9.6536 -4.8391 -1.3888 49 1 8.0200 -3.3385 0.5961 50 1 7.7328 -3.2604 -1.1586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099751004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -92.308738 kcal Electronic energy + Delta-G solvation = -29906.203322 eV Core-core repulsion = 25741.123824 eV Total energy + Delta-G solvation = -4165.079498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57025 -39.17103 -38.21964 -37.67136 -36.15118 -34.67043 -33.91124 -32.68000 -31.75432 -31.20830 -29.74735 -27.63985 -25.42533 -24.46990 -23.17685 -22.70884 -22.58446 -21.07980 -20.57811 -19.43968 -19.24857 -18.38276 -17.43091 -17.35836 -16.37612 -16.18682 -15.75102 -15.67255 -15.53354 -15.03500 -14.95314 -14.65358 -14.40433 -14.08404 -13.73916 -13.63277 -13.58323 -13.19980 -12.81274 -12.79027 -12.60267 -12.46440 -12.26821 -12.08856 -11.91046 -11.66770 -11.54033 -11.49866 -11.35277 -11.26244 -10.88304 -10.64587 -10.63956 -10.55517 -10.24265 -10.20580 -10.01110 -9.84789 -9.58295 -9.14007 -8.61333 -8.22683 -8.06461 -6.34777 -3.86411 2.57543 2.98011 3.02702 3.03024 3.11499 3.47011 3.60435 3.68133 4.01770 4.06433 4.31817 4.49588 4.55372 4.61054 4.65490 4.66580 4.72559 4.91644 4.95562 5.04899 5.16042 5.16826 5.19350 5.26728 5.31267 5.35499 5.41398 5.47025 5.55739 5.58074 5.64887 5.66064 5.67899 5.77386 5.83460 5.83826 5.87755 5.90138 6.06985 6.20959 6.38970 6.44340 7.03393 7.13258 7.39125 7.39442 7.54000 8.10331 8.14633 8.55689 8.91228 9.38076 9.78268 10.78197 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012973 B = 0.002301 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.783425 B =12166.830723 C =13260.140818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.451 3.549 11 O -0.557 6.557 12 C 0.045 3.955 13 N -0.510 5.510 14 C 0.052 3.948 15 C -0.122 4.122 16 C 0.154 3.846 17 H 0.093 0.907 18 N -0.716 5.716 19 C 0.513 3.487 20 O -0.543 6.543 21 C -0.138 4.138 22 C -0.073 4.073 23 C -0.155 4.155 24 C -0.182 4.182 25 C -0.181 4.181 26 C 0.101 3.899 27 H 0.082 0.918 28 O -0.563 6.563 29 C 0.024 3.976 30 H 0.274 0.726 31 H 0.370 0.630 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.398 0.602 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.379 0.621 49 H 0.035 0.965 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.595 -6.318 6.762 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.237 3.763 11 O -0.439 6.439 12 C -0.087 4.087 13 N -0.236 5.236 14 C -0.076 4.076 15 C -0.161 4.161 16 C 0.049 3.951 17 H 0.111 0.889 18 N -0.368 5.368 19 C 0.300 3.700 20 O -0.421 6.421 21 C -0.178 4.178 22 C -0.110 4.110 23 C -0.173 4.173 24 C -0.219 4.219 25 C -0.218 4.218 26 C 0.042 3.958 27 H 0.099 0.901 28 O -0.367 6.367 29 C -0.105 4.105 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.233 0.767 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.226 0.774 49 H 0.053 0.947 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.462 -8.356 6.955 25.858 hybrid contribution 1.131 2.901 0.047 3.114 sum 24.593 -5.455 7.002 26.146 Atomic orbital electron populations 1.69622 1.05632 1.27519 1.49222 1.25049 0.95499 0.97985 0.97665 0.86671 0.79713 0.84090 0.78880 1.19606 1.20183 1.19592 1.19419 0.79162 0.96633 1.48110 0.86230 1.42207 1.07558 1.06104 1.67072 1.19596 0.87986 0.84590 0.84157 1.90537 1.69286 1.30708 1.53385 1.21876 0.95776 0.89421 1.01599 1.61457 1.10672 1.14847 1.36623 1.22290 1.03908 0.93041 0.88318 1.21929 0.93485 0.97109 1.03559 1.21025 0.91997 0.98451 0.83591 0.88883 1.45986 1.58222 1.15381 1.17170 1.20683 0.79263 0.86401 0.83644 1.90697 1.53041 1.17350 1.80981 1.21652 1.01367 1.00299 0.94450 1.20908 1.00939 0.96983 0.92215 1.22364 0.99202 0.98960 0.96749 1.23063 0.91423 1.03541 1.03908 1.22975 1.02727 1.01396 0.94696 1.22059 0.81418 0.94650 0.97721 0.90051 1.86548 1.22041 1.78794 1.49340 1.22800 0.89265 0.97171 1.01241 0.91584 0.79759 0.93352 0.89186 0.95798 0.87374 0.90376 0.89541 0.76748 0.88906 0.88938 0.90707 0.91061 0.87743 0.88756 0.88982 0.88864 0.88687 0.77395 0.94736 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.34 13.96 55.50 0.77 -24.57 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.30 -8.40 10.16 -14.94 -0.15 -8.56 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.59 -13.54 5.09 -10.96 -0.06 -13.60 16 10 C 0.45 9.75 7.46 -10.98 -0.08 9.67 16 11 O -0.56 -14.24 13.90 5.55 0.08 -14.16 16 12 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 13 N -0.51 -7.34 4.40 -236.11 -1.04 -8.38 16 14 C 0.05 0.77 4.96 -3.83 -0.02 0.75 16 15 C -0.12 -1.64 5.76 -26.65 -0.15 -1.80 16 16 C 0.15 1.82 2.52 -67.81 -0.17 1.65 16 17 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 18 N -0.72 -7.56 4.17 -53.69 -0.22 -7.79 16 19 C 0.51 5.97 7.80 -10.99 -0.09 5.88 16 20 O -0.54 -8.36 15.65 5.56 0.09 -8.28 16 21 C -0.14 -1.12 5.66 -27.88 -0.16 -1.28 16 22 C -0.07 -0.64 4.79 -26.73 -0.13 -0.77 16 23 C -0.15 -1.13 5.73 -90.62 -0.52 -1.65 16 24 C -0.18 -1.23 10.18 -26.69 -0.27 -1.51 16 25 C -0.18 -1.27 10.25 -26.69 -0.27 -1.55 16 26 C 0.10 1.03 3.35 -26.66 -0.09 0.94 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 O -0.56 -5.04 13.14 -35.23 -0.46 -5.50 16 29 C 0.02 0.25 4.93 -3.84 -0.02 0.23 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 32 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.09 1.19 7.99 -51.93 -0.41 0.77 16 34 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 35 H 0.11 2.05 5.78 -51.93 -0.30 1.75 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.40 3.53 7.01 -40.82 -0.29 3.24 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.76 8.10 -51.93 -0.42 0.33 16 42 H 0.07 0.70 7.83 -51.92 -0.41 0.29 16 43 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 44 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.38 1.84 9.08 45.56 0.41 2.25 16 49 H 0.03 0.33 6.64 -51.93 -0.34 -0.02 16 50 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -34.19 399.81 -9.18 -43.37 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.40 Total: 15.00 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.24 Total: 3.69 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.54 Total: -54.33 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.30 Total: -27.94 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.19 -9.18 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099751004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.941 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds