Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48502 * 109.46809 * 93.02501 * 3 2 1 5 5 H 1.48501 * 109.46895 * 213.02686 * 3 2 1 6 6 H 1.48495 * 109.47341 * 333.02896 * 3 2 1 7 7 C 1.38808 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00451 * 19.01332 * 7 2 1 9 9 N 1.36941 * 119.99647 * 199.00867 * 7 2 1 10 10 C 1.46926 * 120.63137 * 29.39389 * 9 7 2 11 11 C 1.53630 * 108.53931 * 126.37040 * 10 9 7 12 12 C 1.53038 * 109.24196 * 54.85639 * 11 10 9 13 13 H 1.09011 * 109.45849 * 58.53305 * 12 11 10 14 14 N 1.46498 * 109.46106 * 178.48945 * 12 11 10 15 15 C 1.34785 * 119.99659 * 275.07369 * 14 12 11 16 16 O 1.21278 * 120.00403 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99504 * 179.97438 * 15 14 12 18 18 C 1.52995 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47388 * 179.97438 * 18 17 15 20 20 N 1.46492 * 109.47546 * 180.02562 * 19 18 17 21 21 C 1.34778 * 120.00476 * 180.02562 * 20 19 18 22 22 O 1.21279 * 119.99456 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00084 * 180.02562 * 21 20 19 24 24 C 1.53004 * 117.49901 * 248.74470 * 23 21 20 25 25 C 1.52999 * 117.49969 * 180.08503 * 23 21 20 26 26 C 1.53040 * 109.54183 * 298.51186 * 12 11 10 27 27 H 1.08996 * 109.52182 * 301.39842 * 26 12 11 28 28 O 1.42893 * 109.49964 * 181.31696 * 26 12 11 29 29 C 1.46931 * 120.62912 * 209.68158 * 9 7 2 30 30 H 0.97002 * 119.99392 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.58885 * 246.20405 * 10 9 7 32 32 H 1.09000 * 109.58680 * 6.63203 * 10 9 7 33 33 H 1.09000 * 109.63251 * 294.86842 * 11 10 9 34 34 H 1.08993 * 109.45574 * 174.74437 * 11 10 9 35 35 H 0.96996 * 120.00109 * 95.06772 * 14 12 11 36 36 H 1.09004 * 109.47308 * 300.00040 * 17 15 14 37 37 H 1.09000 * 109.47173 * 59.99651 * 17 15 14 38 38 H 1.08995 * 109.47483 * 300.00103 * 18 17 15 39 39 H 1.09000 * 109.47069 * 60.00042 * 18 17 15 40 40 H 1.09004 * 109.47202 * 300.00665 * 19 18 17 41 41 H 1.09000 * 109.46895 * 60.00041 * 19 18 17 42 42 H 0.97009 * 119.99855 * 0.02562 * 20 19 18 43 43 H 1.09003 * 115.55412 * 34.41649 * 23 21 20 44 44 H 1.08998 * 117.49715 * 359.97438 * 24 23 21 45 45 H 1.09000 * 117.49701 * 145.01985 * 24 23 21 46 46 H 1.09001 * 117.50672 * 214.98028 * 25 23 21 47 47 H 1.09003 * 117.49823 * 0.02562 * 25 23 21 48 48 H 0.96701 * 114.00091 * 180.16633 * 28 26 12 49 49 H 1.09003 * 109.58620 * 353.37045 * 29 9 7 50 50 H 1.08993 * 109.59047 * 113.79844 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5617 2.0094 1.3982 5 1 3.5143 1.4594 -0.7631 6 1 1.4172 2.6703 -0.6350 7 6 2.0102 -1.2022 0.0005 8 1 1.5144 -2.1121 -0.3037 9 7 3.3236 -1.2344 0.3868 10 6 3.8406 -0.2662 1.3636 11 6 4.5206 -1.0387 2.5042 12 6 5.5849 -1.9695 1.9186 13 1 6.3141 -1.3818 1.3608 14 7 6.2613 -2.6822 3.0052 15 6 7.2990 -2.1071 3.6449 16 8 7.6731 -1.0000 3.3207 17 6 7.9945 -2.8401 4.7630 18 6 9.1283 -1.9728 5.3136 19 6 9.8340 -2.7166 6.4493 20 7 10.9192 -1.8860 6.9769 21 6 11.6841 -2.3399 7.9896 22 8 11.4735 -3.4359 8.4643 23 6 12.8000 -1.4852 8.5326 24 6 14.2349 -1.9509 8.2773 25 6 13.6335 -2.0575 9.6809 26 6 4.9208 -2.9807 0.9813 27 1 4.1741 -3.5523 1.5324 28 8 5.9111 -3.8686 0.4589 29 6 4.2441 -2.2338 -0.1723 30 1 -0.4849 0.8401 -0.0004 31 1 4.5647 0.3895 0.8801 32 1 3.0169 0.3263 1.7619 33 1 3.7775 -1.6282 3.0413 34 1 4.9909 -0.3341 3.1900 35 1 5.9623 -3.5678 3.2643 36 1 7.2798 -3.0522 5.5582 37 1 8.4046 -3.7761 4.3840 38 1 9.8429 -1.7611 4.5183 39 1 8.7184 -1.0366 5.6925 40 1 9.1191 -2.9281 7.2445 41 1 10.2438 -3.6530 6.0708 42 1 11.0873 -1.0092 6.5974 43 1 12.6121 -0.4115 8.5337 44 1 14.3717 -2.8757 7.7169 45 1 14.9910 -1.1836 8.1108 46 1 13.9943 -1.3604 10.4373 47 1 13.3750 -3.0525 10.0433 48 1 5.5606 -4.5363 -0.1465 49 1 3.6867 -2.9400 -0.7878 50 1 5.0005 -1.7353 -0.7785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -83.514202 kcal Electronic energy + Delta-G solvation = -29078.093879 eV Core-core repulsion = 24913.395741 eV Total energy + Delta-G solvation = -4164.698139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33252 -39.95173 -38.28170 -36.87952 -35.73023 -35.66722 -34.45199 -33.01874 -32.05948 -30.35424 -29.27221 -27.73672 -25.27765 -24.21720 -22.89973 -22.79908 -22.36429 -21.72445 -20.54626 -20.20230 -19.69373 -17.84541 -17.44717 -17.02904 -16.68280 -16.36880 -16.21368 -16.07724 -15.56880 -15.02378 -15.00231 -14.59171 -14.51128 -14.11584 -13.97598 -13.62125 -13.35730 -12.97519 -12.90321 -12.67819 -12.51271 -12.48750 -12.18737 -12.03583 -11.99665 -11.80934 -11.58912 -11.24437 -11.21199 -11.10047 -11.03734 -10.98486 -10.28782 -10.24484 -10.17946 -10.03121 -9.91075 -9.65033 -9.58521 -9.45681 -8.84682 -8.67601 -7.08381 -6.03850 -3.44384 2.11369 2.68450 2.70731 3.26625 3.27608 3.39978 3.44656 3.47877 4.21973 4.24371 4.32468 4.40688 4.45750 4.48858 4.64716 4.67741 4.68889 4.88357 5.04179 5.12120 5.13112 5.16682 5.25712 5.28998 5.34633 5.36768 5.37285 5.46416 5.53196 5.65569 5.71811 5.76267 5.77313 5.86847 5.99239 6.05945 6.19751 6.25987 6.36317 6.48480 6.55779 6.66682 6.75825 7.10448 7.60107 7.74085 7.84619 7.89161 8.23209 8.31126 8.82027 9.61083 9.97045 11.11611 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.001774 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.632950 B =15784.176482 C =16470.651107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.302 1.302 7 C -0.268 4.268 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.124 3.876 11 C -0.139 4.139 12 C 0.161 3.839 13 H 0.088 0.912 14 N -0.716 5.716 15 C 0.512 3.488 16 O -0.545 6.545 17 C -0.137 4.137 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.726 5.726 21 C 0.542 3.458 22 O -0.542 6.542 23 C -0.197 4.197 24 C -0.153 4.153 25 C -0.148 4.148 26 C 0.080 3.920 27 H 0.061 0.939 28 O -0.570 6.570 29 C 0.123 3.877 30 H 0.264 0.736 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.376 0.624 49 H 0.070 0.930 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.413 -6.106 14.189 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.197 1.197 6 H -0.229 1.229 7 C -0.396 4.396 8 H 0.104 0.896 9 N -0.327 5.327 10 C -0.002 4.002 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.106 0.894 14 N -0.366 5.366 15 C 0.298 3.702 16 O -0.423 6.423 17 C -0.178 4.178 18 C -0.154 4.154 19 C -0.006 4.006 20 N -0.377 5.377 21 C 0.328 3.672 22 O -0.420 6.420 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.185 4.185 26 C 0.019 3.981 27 H 0.079 0.921 28 O -0.375 6.375 29 C -0.004 4.004 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.223 0.777 49 H 0.088 0.912 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 23.725 -5.657 14.624 28.438 hybrid contribution -0.234 0.714 -0.506 0.906 sum 23.491 -4.943 14.117 27.849 Atomic orbital electron populations 1.69814 1.05729 1.26780 1.52459 1.25321 0.95248 0.97698 0.98884 0.86990 0.79741 0.84341 0.77508 1.21187 1.19657 1.22948 1.18877 0.83850 0.94664 1.42165 0.89634 1.44325 1.07438 1.35176 1.45754 1.21529 0.97339 0.92105 0.89216 1.22484 0.97284 0.98665 0.99557 1.20940 0.94319 0.92601 0.86417 0.89399 1.46062 1.33318 1.20826 1.36374 1.20528 0.79945 0.86513 0.83226 1.90703 1.65140 1.20114 1.66309 1.21539 0.98522 1.00087 0.97637 1.21506 0.97299 0.99065 0.97506 1.21406 0.88787 0.94150 0.96217 1.45925 1.33882 1.21545 1.36331 1.19680 0.82004 0.86350 0.79167 1.90703 1.70437 1.21526 1.59292 1.22215 0.92345 1.00280 1.07008 1.22962 0.92710 1.03430 0.99920 1.22972 1.00816 1.03497 0.91243 1.22725 0.89180 0.90564 0.95662 0.92108 1.86468 1.37258 1.47369 1.66368 1.21570 0.93008 0.92651 0.93196 0.92586 0.95269 0.90091 0.91307 0.91558 0.76786 0.88614 0.88605 0.90349 0.90326 0.91247 0.91296 0.76179 0.85751 0.88217 0.87675 0.87839 0.87374 0.77697 0.91165 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.09 13.97 55.49 0.78 -26.31 16 2 C 0.03 0.80 5.24 -17.43 -0.09 0.70 16 3 Si 0.88 22.14 24.35 -169.99 -4.14 18.00 16 4 H -0.28 -6.84 6.39 56.52 0.36 -6.48 16 5 H -0.27 -6.78 6.93 56.52 0.39 -6.39 16 6 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.27 -7.21 10.03 -15.06 -0.15 -7.36 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 9 N -0.60 -13.72 2.74 -172.05 -0.47 -14.19 16 10 C 0.12 2.68 4.22 -3.48 -0.01 2.66 16 11 C -0.14 -2.49 5.67 -26.38 -0.15 -2.64 16 12 C 0.16 2.61 2.11 -67.89 -0.14 2.47 16 13 H 0.09 1.64 7.58 -51.92 -0.39 1.25 16 14 N -0.72 -9.27 4.92 -53.76 -0.26 -9.53 16 15 C 0.51 6.68 7.79 -10.98 -0.09 6.59 16 16 O -0.55 -9.28 15.64 5.56 0.09 -9.19 16 17 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 18 C -0.12 -0.94 4.62 -26.73 -0.12 -1.07 16 19 C 0.12 0.93 5.67 -4.05 -0.02 0.90 16 20 N -0.73 -5.49 5.56 -60.30 -0.33 -5.82 16 21 C 0.54 5.09 7.61 -10.99 -0.08 5.01 16 22 O -0.54 -7.21 16.26 5.56 0.09 -7.12 16 23 C -0.20 -1.27 6.19 -91.77 -0.57 -1.84 16 24 C -0.15 -0.83 10.24 -26.69 -0.27 -1.10 16 25 C -0.15 -0.90 10.05 -26.69 -0.27 -1.17 16 26 C 0.08 1.23 3.14 -26.61 -0.08 1.14 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 O -0.57 -7.62 13.16 -35.23 -0.46 -8.09 16 29 C 0.12 2.29 6.14 -3.71 -0.02 2.26 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.03 0.64 7.21 -51.93 -0.37 0.27 16 32 H 0.08 1.90 4.51 -51.93 -0.23 1.67 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 4.12 8.60 -40.82 -0.35 3.77 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 2.16 8.47 -40.82 -0.35 1.82 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.11 0.83 7.67 -51.93 -0.40 0.43 16 48 H 0.38 3.51 9.08 45.56 0.41 3.93 16 49 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -35.54 402.78 -8.51 -44.05 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.62 Total: 6.86 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.24 Total: 5.28 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.30 Total: -55.86 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.29 Total: -24.40 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.54 -8.51 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.463 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds