Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48502 * 109.46809 * 93.02501 * 3 2 1 5 5 H 1.48501 * 109.46895 * 213.02686 * 3 2 1 6 6 H 1.48495 * 109.47341 * 333.02896 * 3 2 1 7 7 C 1.38808 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00451 * 19.01332 * 7 2 1 9 9 N 1.36941 * 119.99647 * 199.00867 * 7 2 1 10 10 C 1.46926 * 120.63137 * 29.39389 * 9 7 2 11 11 C 1.53630 * 108.53931 * 126.37040 * 10 9 7 12 12 C 1.53038 * 109.24196 * 54.85639 * 11 10 9 13 13 H 1.09011 * 109.45849 * 58.53305 * 12 11 10 14 14 N 1.46498 * 109.46106 * 178.48945 * 12 11 10 15 15 C 1.34785 * 119.99659 * 275.07369 * 14 12 11 16 16 O 1.21278 * 120.00403 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99504 * 179.97438 * 15 14 12 18 18 C 1.52995 * 109.47004 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47388 * 179.97438 * 18 17 15 20 20 N 1.46492 * 109.47546 * 180.02562 * 19 18 17 21 21 C 1.34778 * 120.00476 * 180.02562 * 20 19 18 22 22 O 1.21279 * 119.99456 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00084 * 180.02562 * 21 20 19 24 24 C 1.53004 * 117.49901 * 248.74470 * 23 21 20 25 25 C 1.52999 * 117.49969 * 180.08503 * 23 21 20 26 26 C 1.53040 * 109.54183 * 298.51186 * 12 11 10 27 27 H 1.08996 * 109.52182 * 301.39842 * 26 12 11 28 28 O 1.42893 * 109.49964 * 181.31696 * 26 12 11 29 29 C 1.46931 * 120.62912 * 209.68158 * 9 7 2 30 30 H 0.97002 * 119.99392 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.58885 * 246.20405 * 10 9 7 32 32 H 1.09000 * 109.58680 * 6.63203 * 10 9 7 33 33 H 1.09000 * 109.63251 * 294.86842 * 11 10 9 34 34 H 1.08993 * 109.45574 * 174.74437 * 11 10 9 35 35 H 0.96996 * 120.00109 * 95.06772 * 14 12 11 36 36 H 1.09004 * 109.47308 * 300.00040 * 17 15 14 37 37 H 1.09000 * 109.47173 * 59.99651 * 17 15 14 38 38 H 1.08995 * 109.47483 * 300.00103 * 18 17 15 39 39 H 1.09000 * 109.47069 * 60.00042 * 18 17 15 40 40 H 1.09004 * 109.47202 * 300.00665 * 19 18 17 41 41 H 1.09000 * 109.46895 * 60.00041 * 19 18 17 42 42 H 0.97009 * 119.99855 * 0.02562 * 20 19 18 43 43 H 1.09003 * 115.55412 * 34.41649 * 23 21 20 44 44 H 1.08998 * 117.49715 * 359.97438 * 24 23 21 45 45 H 1.09000 * 117.49701 * 145.01985 * 24 23 21 46 46 H 1.09001 * 117.50672 * 214.98028 * 25 23 21 47 47 H 1.09003 * 117.49823 * 0.02562 * 25 23 21 48 48 H 0.96701 * 114.00091 * 180.16633 * 28 26 12 49 49 H 1.09003 * 109.58620 * 353.37045 * 29 9 7 50 50 H 1.08993 * 109.59047 * 113.79844 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5617 2.0094 1.3982 5 1 3.5143 1.4594 -0.7631 6 1 1.4172 2.6703 -0.6350 7 6 2.0102 -1.2022 0.0005 8 1 1.5144 -2.1121 -0.3037 9 7 3.3236 -1.2344 0.3868 10 6 3.8406 -0.2662 1.3636 11 6 4.5206 -1.0387 2.5042 12 6 5.5849 -1.9695 1.9186 13 1 6.3141 -1.3818 1.3608 14 7 6.2613 -2.6822 3.0052 15 6 7.2990 -2.1071 3.6449 16 8 7.6731 -1.0000 3.3207 17 6 7.9945 -2.8401 4.7630 18 6 9.1283 -1.9728 5.3136 19 6 9.8340 -2.7166 6.4493 20 7 10.9192 -1.8860 6.9769 21 6 11.6841 -2.3399 7.9896 22 8 11.4735 -3.4359 8.4643 23 6 12.8000 -1.4852 8.5326 24 6 14.2349 -1.9509 8.2773 25 6 13.6335 -2.0575 9.6809 26 6 4.9208 -2.9807 0.9813 27 1 4.1741 -3.5523 1.5324 28 8 5.9111 -3.8686 0.4589 29 6 4.2441 -2.2338 -0.1723 30 1 -0.4849 0.8401 -0.0004 31 1 4.5647 0.3895 0.8801 32 1 3.0169 0.3263 1.7619 33 1 3.7775 -1.6282 3.0413 34 1 4.9909 -0.3341 3.1900 35 1 5.9623 -3.5678 3.2643 36 1 7.2798 -3.0522 5.5582 37 1 8.4046 -3.7761 4.3840 38 1 9.8429 -1.7611 4.5183 39 1 8.7184 -1.0366 5.6925 40 1 9.1191 -2.9281 7.2445 41 1 10.2438 -3.6530 6.0708 42 1 11.0873 -1.0092 6.5974 43 1 12.6121 -0.4115 8.5337 44 1 14.3717 -2.8757 7.7169 45 1 14.9910 -1.1836 8.1108 46 1 13.9943 -1.3604 10.4373 47 1 13.3750 -3.0525 10.0433 48 1 5.5606 -4.5363 -0.1465 49 1 3.6867 -2.9400 -0.7878 50 1 5.0005 -1.7353 -0.7785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099863012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -112.881410 kcal Electronic energy + Delta-G solvation = -29079.367337 eV Core-core repulsion = 24913.395741 eV Total energy + Delta-G solvation = -4165.971596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19627 -40.92707 -39.59238 -37.43010 -37.11054 -36.46316 -35.73193 -34.08103 -33.67277 -31.89327 -30.72815 -28.61373 -26.80499 -25.05156 -24.29262 -23.70796 -23.31328 -22.69201 -21.54489 -21.30743 -20.74843 -19.01130 -18.44438 -18.10229 -18.05839 -17.64392 -17.07034 -16.96732 -16.62683 -16.26729 -16.18352 -15.75833 -15.56824 -15.23883 -15.07473 -14.79692 -14.69581 -14.51237 -14.03046 -13.92610 -13.72546 -13.54263 -13.23642 -13.20861 -13.12752 -12.93042 -12.67130 -12.49760 -12.45008 -12.17067 -11.90433 -11.88684 -11.65308 -11.55430 -11.46928 -11.45987 -11.15329 -11.01131 -10.87599 -10.63703 -10.13613 -10.03198 -8.99501 -8.20737 -5.56572 1.27110 1.39006 1.44945 1.46643 1.70125 2.00657 2.32523 2.37364 2.91626 2.92544 3.10978 3.35043 3.64467 3.72855 3.82154 3.86732 3.97042 3.98985 4.01470 4.03329 4.10015 4.21491 4.23467 4.30727 4.33284 4.54437 4.56941 4.65048 4.70408 4.73661 4.74515 4.82534 4.86174 4.90085 4.91833 5.02397 5.02584 5.11804 5.20736 5.22229 5.24849 5.42401 5.50454 5.82070 6.09330 6.50248 6.61727 6.78650 6.91362 7.19505 7.32069 7.54442 7.95198 8.98405 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.001774 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.632950 B =15784.176482 C =16470.651107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.025 4.025 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.308 1.308 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.120 3.880 11 C -0.126 4.126 12 C 0.167 3.833 13 H 0.064 0.936 14 N -0.707 5.707 15 C 0.508 3.492 16 O -0.588 6.588 17 C -0.128 4.128 18 C -0.105 4.105 19 C 0.123 3.877 20 N -0.718 5.718 21 C 0.534 3.466 22 O -0.589 6.589 23 C -0.202 4.202 24 C -0.143 4.143 25 C -0.154 4.154 26 C 0.100 3.900 27 H 0.071 0.929 28 O -0.568 6.568 29 C 0.118 3.882 30 H 0.263 0.737 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.415 0.585 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.415 0.585 43 H 0.150 0.850 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.397 0.603 49 H 0.076 0.924 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.733 -6.597 15.218 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.221 4.221 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.237 1.237 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.339 5.339 10 C -0.006 4.006 11 C -0.167 4.167 12 C 0.061 3.939 13 H 0.082 0.918 14 N -0.358 5.358 15 C 0.296 3.704 16 O -0.468 6.468 17 C -0.168 4.168 18 C -0.143 4.143 19 C -0.001 4.001 20 N -0.369 5.369 21 C 0.322 3.678 22 O -0.470 6.470 23 C -0.223 4.223 24 C -0.180 4.180 25 C -0.192 4.192 26 C 0.039 3.961 27 H 0.088 0.912 28 O -0.375 6.375 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.252 0.748 43 H 0.168 0.832 44 H 0.106 0.894 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.104 0.896 48 H 0.247 0.753 49 H 0.095 0.905 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 26.087 -6.181 15.646 31.040 hybrid contribution -0.906 0.760 -0.878 1.473 sum 25.181 -5.420 14.768 29.691 Atomic orbital electron populations 1.69923 1.07134 1.27255 1.55287 1.25857 0.95748 1.00527 0.99931 0.86110 0.78259 0.80939 0.78020 1.19786 1.19620 1.23659 1.18870 0.85494 0.93610 1.40035 0.91948 1.44400 1.06732 1.36224 1.46540 1.21496 0.96662 0.92276 0.90142 1.22288 0.97602 0.98752 0.98032 1.20606 0.93312 0.92631 0.87319 0.91819 1.45895 1.33128 1.21307 1.35446 1.21326 0.79433 0.86089 0.83533 1.90691 1.66267 1.22211 1.67670 1.21566 0.98621 1.00169 0.96486 1.21377 0.97047 0.98730 0.97158 1.21322 0.88768 0.94064 0.95923 1.45911 1.33311 1.21955 1.35697 1.20237 0.82489 0.86056 0.78970 1.90678 1.71855 1.23605 1.60841 1.22313 0.91778 1.01008 1.07224 1.23046 0.92481 1.03553 0.98957 1.23021 1.01136 1.02930 0.92091 1.22279 0.89310 0.90368 0.94132 0.91160 1.86444 1.36627 1.47513 1.66959 1.21768 0.92396 0.92010 0.94646 0.92822 0.95649 0.92224 0.90816 0.91274 0.74888 0.86208 0.86261 0.91111 0.91116 0.91491 0.91473 0.74804 0.83217 0.89403 0.85173 0.85667 0.89639 0.75311 0.90528 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 13.97 21.65 0.30 -57.85 16 2 C -0.02 -1.42 5.24 84.86 0.45 -0.98 16 3 Si 0.94 46.31 24.35 68.60 1.67 47.98 16 4 H -0.27 -12.68 6.39 99.48 0.64 -12.04 16 5 H -0.27 -13.20 6.93 99.48 0.69 -12.51 16 6 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 7 C -0.25 -13.61 10.03 84.03 0.84 -12.76 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.61 -27.60 2.74 -698.25 -1.91 -29.51 16 10 C 0.12 5.09 4.22 86.51 0.37 5.45 16 11 C -0.13 -4.32 5.67 30.82 0.17 -4.15 16 12 C 0.17 5.08 2.11 45.02 0.10 5.17 16 13 H 0.06 2.30 7.58 -2.38 -0.02 2.28 16 14 N -0.71 -16.34 4.92 -442.39 -2.18 -18.51 16 15 C 0.51 12.05 7.79 87.66 0.68 12.74 16 16 O -0.59 -19.27 15.64 -3.02 -0.05 -19.32 16 17 C -0.13 -1.75 5.70 29.85 0.17 -1.58 16 18 C -0.10 -1.50 4.62 30.59 0.14 -1.36 16 19 C 0.12 1.72 5.67 86.38 0.49 2.21 16 20 N -0.72 -9.83 5.56 -463.07 -2.57 -12.40 16 21 C 0.53 9.60 7.61 87.66 0.67 10.27 16 22 O -0.59 -15.71 16.26 -3.03 -0.05 -15.75 16 23 C -0.20 -2.26 6.19 -11.54 -0.07 -2.33 16 24 C -0.14 -1.29 10.24 30.62 0.31 -0.98 16 25 C -0.15 -1.70 10.05 30.62 0.31 -1.39 16 26 C 0.10 2.84 3.14 30.67 0.10 2.94 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 O -0.57 -13.32 13.16 -148.98 -1.96 -15.28 16 29 C 0.12 4.21 6.14 86.36 0.53 4.74 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.03 1.10 7.21 -2.39 -0.02 1.08 16 32 H 0.06 2.78 4.51 -2.39 -0.01 2.77 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.41 7.05 8.60 -92.71 -0.80 6.25 16 36 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.42 3.70 8.47 -92.70 -0.79 2.92 16 43 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 1.34 7.67 -2.39 -0.02 1.33 16 48 H 0.40 5.97 9.08 -74.06 -0.67 5.30 16 49 H 0.08 2.61 7.93 -2.39 -0.02 2.59 16 50 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -79.02 402.78 -2.87 -81.89 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -1.37 Total: 20.77 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.25 Total: 17.99 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -6.36 Total: -118.28 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -2.06 Total: -50.36 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.67 Total: 47.98 kcal Total: -79.02 -2.87 -81.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.992 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds