Wall clock time and date at job start Sat Apr 11 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00402 * 2 1 4 4 H 1.48506 * 109.47397 * 270.00047 * 3 2 1 5 5 H 1.48497 * 109.47016 * 30.00141 * 3 2 1 6 6 H 1.48496 * 109.47229 * 149.99926 * 3 2 1 7 7 C 1.38810 * 119.99248 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99862 * 162.88790 * 7 2 1 9 9 N 1.36935 * 120.00425 * 343.15714 * 7 2 1 10 10 C 1.46924 * 120.63266 * 152.18100 * 9 7 2 11 11 C 1.53188 * 108.77660 * 126.36881 * 10 9 7 12 12 C 1.53044 * 109.31144 * 54.63990 * 11 10 9 13 13 H 1.09001 * 109.45936 * 58.65336 * 12 11 10 14 14 N 1.46492 * 109.46004 * 178.62729 * 12 11 10 15 15 C 1.34780 * 120.00185 * 274.99866 * 14 12 11 16 16 O 1.21286 * 119.99453 * 359.97438 * 15 14 12 17 17 C 1.50700 * 120.00168 * 180.02562 * 15 14 12 18 18 C 1.53004 * 109.47006 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47155 * 179.97438 * 18 17 15 20 20 N 1.46495 * 109.47120 * 180.02562 * 19 18 17 21 21 C 1.34780 * 119.99825 * 180.02562 * 20 19 18 22 22 O 1.21273 * 120.00010 * 359.97438 * 21 20 19 23 23 C 1.50705 * 119.99688 * 180.02562 * 21 20 19 24 24 C 1.52999 * 117.49585 * 248.74209 * 23 21 20 25 25 C 1.53004 * 117.49470 * 180.08581 * 23 21 20 26 26 C 1.53037 * 109.53246 * 298.63211 * 12 11 10 27 27 H 1.09007 * 109.49826 * 181.31426 * 26 12 11 28 28 O 1.42892 * 109.50316 * 301.37974 * 26 12 11 29 29 C 1.46927 * 120.63011 * 331.90457 * 9 7 2 30 30 H 0.97005 * 119.99823 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58515 * 246.16345 * 10 9 7 32 32 H 1.09012 * 109.58643 * 6.58097 * 10 9 7 33 33 H 1.09003 * 109.49774 * 174.58628 * 11 10 9 34 34 H 1.08993 * 109.49902 * 294.68700 * 11 10 9 35 35 H 0.96999 * 120.00125 * 95.00163 * 14 12 11 36 36 H 1.08999 * 109.46753 * 299.99510 * 17 15 14 37 37 H 1.08991 * 109.47255 * 59.99630 * 17 15 14 38 38 H 1.09000 * 109.46928 * 300.00252 * 18 17 15 39 39 H 1.09007 * 109.47137 * 59.99510 * 18 17 15 40 40 H 1.08999 * 109.47057 * 300.00042 * 19 18 17 41 41 H 1.08998 * 109.46540 * 59.99835 * 19 18 17 42 42 H 0.96998 * 120.00139 * 0.02562 * 20 19 18 43 43 H 1.08997 * 115.55124 * 34.41399 * 23 21 20 44 44 H 1.09002 * 117.49663 * 0.02562 * 24 23 21 45 45 H 1.08994 * 117.49960 * 145.01889 * 24 23 21 46 46 H 1.08999 * 117.49104 * 214.97625 * 25 23 21 47 47 H 1.08996 * 117.50048 * 359.96833 * 25 23 21 48 48 H 0.96696 * 114.00700 * 180.02562 * 28 26 12 49 49 H 1.08997 * 109.58334 * 353.41526 * 29 9 7 50 50 H 1.09008 * 109.58397 * 113.84187 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6525 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0543 -1.2229 -0.2758 9 7 1.3694 -2.3628 0.3425 10 6 1.8186 -3.6535 -0.1969 11 6 2.0670 -4.6156 0.9690 12 6 0.8066 -4.6999 1.8330 13 1 -0.0294 -5.0426 1.2233 14 7 1.0295 -5.6443 2.9305 15 6 0.8285 -6.9628 2.7364 16 8 0.4626 -7.3673 1.6532 17 6 1.0573 -7.9342 3.8656 18 6 0.7592 -9.3555 3.3840 19 6 0.9920 -10.3418 4.5302 20 7 0.7072 -11.7027 4.0688 21 6 0.8444 -12.7434 4.9142 22 8 1.2040 -12.5532 6.0567 23 6 0.5519 -14.1435 4.4394 24 6 -0.6786 -14.8436 5.0196 25 6 0.7244 -15.2817 5.4472 26 6 0.4863 -3.3179 2.4070 27 1 -0.3980 -3.3833 3.0410 28 8 1.5946 -2.8541 3.1807 29 6 0.2234 -2.3417 1.2618 30 1 -0.4850 0.8401 -0.0004 31 1 1.0495 -4.0635 -0.8515 32 1 2.7425 -3.5134 -0.7583 33 1 2.3079 -5.6048 0.5795 34 1 2.8977 -4.2494 1.5722 35 1 1.3218 -5.3207 3.7970 36 1 2.0947 -7.8716 4.1941 37 1 0.3973 -7.6868 4.6970 38 1 -0.2783 -9.4177 3.0556 39 1 1.4189 -9.6031 2.5523 40 1 2.0297 -10.2794 4.8581 41 1 0.3326 -10.0942 5.3620 42 1 0.4199 -11.8549 3.1549 43 1 0.8046 -14.3496 3.3993 44 1 -1.2767 -14.2913 5.7444 45 1 -1.2353 -15.5105 4.3614 46 1 1.0902 -16.2367 5.0700 47 1 1.0499 -15.0179 6.4535 48 1 1.4608 -1.9819 3.5761 49 1 0.0952 -1.3363 1.6627 50 1 -0.6784 -2.6426 0.7285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:34 Heat of formation + Delta-G solvation = -87.538121 kcal Electronic energy + Delta-G solvation = -29073.497718 eV Core-core repulsion = 24908.625089 eV Total energy + Delta-G solvation = -4164.872629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30968 -39.84086 -38.07324 -36.85767 -35.69924 -34.81776 -34.31305 -32.99025 -32.03382 -29.59010 -29.12955 -27.64347 -25.22606 -24.23303 -22.89089 -22.53621 -22.14544 -21.61169 -20.47266 -20.00360 -19.33093 -17.82735 -17.44283 -16.96990 -16.32903 -16.14177 -16.03731 -15.57143 -15.44355 -15.04619 -14.88848 -14.57855 -14.03950 -13.94665 -13.82525 -13.57633 -13.27447 -12.95655 -12.89103 -12.54565 -12.43172 -12.08888 -12.01810 -12.00686 -11.77919 -11.28480 -11.20176 -11.15868 -11.08782 -10.97067 -10.80596 -10.62017 -10.49660 -10.23357 -10.20451 -10.07560 -9.81555 -9.59631 -9.43829 -9.20820 -8.71415 -8.51874 -6.70340 -5.84006 -3.24536 2.12951 2.70815 2.75953 3.33458 3.37729 3.41663 3.42305 3.44730 4.23568 4.33885 4.41939 4.45856 4.51539 4.66709 4.70806 4.71705 4.80755 5.10429 5.13543 5.19307 5.27304 5.27942 5.34522 5.39513 5.42316 5.44532 5.47710 5.55528 5.66781 5.79755 5.89399 5.92790 6.02832 6.07779 6.19708 6.26759 6.43871 6.53519 6.76708 6.84064 6.96025 7.12318 7.14427 7.40203 7.72153 7.76281 7.86346 8.21101 8.39170 8.40484 9.15585 9.78745 10.35534 11.24956 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042575 B = 0.001587 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.500749 B =17641.758780 C =17793.157541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.719 5.719 15 C 0.508 3.492 16 O -0.547 6.547 17 C -0.138 4.138 18 C -0.115 4.115 19 C 0.118 3.882 20 N -0.725 5.725 21 C 0.541 3.459 22 O -0.542 6.542 23 C -0.197 4.197 24 C -0.153 4.153 25 C -0.148 4.148 26 C 0.073 3.927 27 H 0.043 0.957 28 O -0.560 6.560 29 C 0.145 3.855 30 H 0.253 0.747 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.375 0.625 49 H 0.096 0.904 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 -23.821 10.611 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.369 5.369 15 C 0.294 3.706 16 O -0.425 6.425 17 C -0.179 4.179 18 C -0.153 4.153 19 C -0.006 4.006 20 N -0.377 5.377 21 C 0.328 3.672 22 O -0.420 6.420 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.185 4.185 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.366 6.366 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.222 0.778 49 H 0.114 0.886 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.883 -24.358 10.449 26.519 hybrid contribution 0.147 1.654 0.009 1.660 sum -0.736 -22.704 10.457 25.008 Atomic orbital electron populations 1.70020 1.05223 1.25492 1.54503 1.25014 0.95282 0.98369 1.01188 0.86293 0.79145 0.83561 0.77771 1.21435 1.21636 1.20495 1.19174 0.92595 0.84666 1.40864 0.91703 1.43851 1.35200 1.01681 1.49714 1.20898 0.97862 0.86446 0.92710 1.22294 0.97547 0.99238 0.98514 1.20999 0.99210 0.86427 0.87572 0.89273 1.46237 1.68461 1.06328 1.15858 1.20563 0.77261 0.83222 0.89544 1.90699 1.46812 1.78266 1.26712 1.21545 1.04302 0.94012 0.98000 1.21505 1.03891 0.92334 0.97602 1.21411 1.01622 0.80358 0.97192 1.45925 1.69568 1.06714 1.15459 1.19683 0.76692 0.85661 0.85186 1.90702 1.46609 1.85721 1.18935 1.22214 1.07190 0.91620 1.00794 1.22958 0.90686 1.02292 1.03076 1.22969 0.98970 0.96763 0.99834 1.22762 0.87710 0.94161 0.94166 0.93928 1.86340 1.42238 1.38605 1.69393 1.21350 0.89687 0.98396 0.88768 0.93656 0.96269 0.92468 0.92964 0.91247 0.76385 0.88640 0.88726 0.90354 0.90335 0.91258 0.91312 0.76177 0.85757 0.88224 0.87682 0.87855 0.87383 0.77806 0.88642 0.95534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.43 11.18 55.49 0.62 -24.80 16 2 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 3 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.52 9.58 -15.06 -0.14 -6.66 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 9 N -0.58 -14.17 2.94 -172.57 -0.51 -14.68 16 10 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 11 C -0.14 -2.52 5.51 -26.61 -0.15 -2.67 16 12 C 0.16 2.79 2.20 -67.89 -0.15 2.64 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 14 N -0.72 -9.91 5.05 -53.77 -0.27 -10.18 16 15 C 0.51 6.79 7.79 -10.98 -0.09 6.71 16 16 O -0.55 -9.37 15.64 5.55 0.09 -9.28 16 17 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 18 C -0.12 -0.95 4.62 -26.73 -0.12 -1.08 16 19 C 0.12 0.94 5.67 -4.04 -0.02 0.91 16 20 N -0.73 -5.51 5.56 -60.30 -0.33 -5.84 16 21 C 0.54 5.11 7.61 -10.98 -0.08 5.03 16 22 O -0.54 -7.24 16.26 5.56 0.09 -7.15 16 23 C -0.20 -1.27 6.19 -91.77 -0.57 -1.83 16 24 C -0.15 -0.83 10.24 -26.69 -0.27 -1.10 16 25 C -0.15 -0.90 10.05 -26.69 -0.27 -1.17 16 26 C 0.07 1.29 3.37 -26.83 -0.09 1.20 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 O -0.56 -9.61 12.08 -35.23 -0.43 -10.04 16 29 C 0.15 3.25 4.91 -3.93 -0.02 3.23 16 30 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.21 7.93 -51.92 -0.41 0.80 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 35 H 0.40 4.78 8.25 -40.82 -0.34 4.44 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.40 2.16 8.47 -40.82 -0.35 1.81 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.11 0.83 7.67 -51.93 -0.40 0.44 16 48 H 0.38 5.59 9.08 45.56 0.41 6.00 16 49 H 0.10 2.34 6.05 -51.93 -0.31 2.03 16 50 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -33.89 407.25 -9.52 -43.41 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.64 Total: 9.41 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.24 Total: 6.88 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.49 Total: -55.50 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.25 Total: -26.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.89 -9.52 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.129 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds