Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47584 * 240.00425 * 3 2 1 5 5 H 1.48497 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47222 * 120.00324 * 3 2 1 7 7 C 1.38817 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99816 * 197.35605 * 7 2 1 9 9 N 1.36936 * 119.99703 * 17.34735 * 7 2 1 10 10 C 1.46931 * 120.62728 * 207.68603 * 9 7 2 11 11 C 1.53194 * 108.77251 * 233.60968 * 10 9 7 12 12 C 1.53037 * 109.31396 * 305.36770 * 11 10 9 13 13 H 1.08998 * 109.44958 * 301.35039 * 12 11 10 14 14 N 1.46507 * 109.45972 * 181.38735 * 12 11 10 15 15 C 1.34776 * 120.00021 * 84.92976 * 14 12 11 16 16 O 1.21281 * 120.00176 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99583 * 179.97438 * 15 14 12 18 18 C 1.53008 * 109.46479 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46542 * 180.02562 * 18 17 15 20 20 N 1.46502 * 109.46817 * 179.97438 * 19 18 17 21 21 C 1.34781 * 120.00005 * 180.02562 * 20 19 18 22 22 O 1.21281 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.50700 * 120.00154 * 179.97438 * 21 20 19 24 24 C 1.52993 * 117.49979 * 248.61892 * 23 21 20 25 25 C 1.52996 * 117.49936 * 179.97438 * 23 21 20 26 26 C 1.53044 * 109.54018 * 61.36586 * 12 11 10 27 27 H 1.08999 * 109.49722 * 178.68379 * 26 12 11 28 28 O 1.42899 * 109.49520 * 58.58845 * 26 12 11 29 29 C 1.46922 * 120.63147 * 27.68907 * 9 7 2 30 30 H 0.97003 * 119.99445 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.58289 * 113.82892 * 10 9 7 32 32 H 1.08998 * 109.58649 * 353.39726 * 10 9 7 33 33 H 1.08998 * 109.49883 * 185.41683 * 11 10 9 34 34 H 1.09003 * 109.49573 * 65.31831 * 11 10 9 35 35 H 0.97002 * 119.99797 * 264.92769 * 14 12 11 36 36 H 1.08999 * 109.47048 * 299.99720 * 17 15 14 37 37 H 1.08996 * 109.47372 * 60.00486 * 17 15 14 38 38 H 1.08999 * 109.47049 * 299.99471 * 18 17 15 39 39 H 1.08994 * 109.47224 * 60.00625 * 18 17 15 40 40 H 1.09005 * 109.47271 * 299.99413 * 19 18 17 41 41 H 1.08996 * 109.47488 * 60.00128 * 19 18 17 42 42 H 0.96999 * 120.00209 * 359.97438 * 20 19 18 43 43 H 1.09004 * 115.54616 * 34.32409 * 23 21 20 44 44 H 1.08998 * 117.49889 * 359.97438 * 24 23 21 45 45 H 1.09005 * 117.50146 * 145.01734 * 24 23 21 46 46 H 1.08995 * 117.49817 * 214.97638 * 25 23 21 47 47 H 1.08994 * 117.50122 * 0.02562 * 25 23 21 48 48 H 0.96705 * 113.99961 * 180.02562 * 28 26 12 49 49 H 1.09003 * 109.58756 * 6.60017 * 29 9 7 50 50 H 1.09005 * 109.58902 * 246.17755 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 1.8193 -3.6548 0.1791 11 6 2.0745 -4.6094 -0.9916 12 6 0.8188 -4.6888 -1.8628 13 1 -0.0201 -5.0357 -1.2596 14 7 1.0480 -5.6265 -2.9650 15 6 0.8478 -6.9463 -2.7796 16 8 0.4774 -7.3578 -1.7005 17 6 1.0830 -7.9106 -3.9135 18 6 0.7845 -9.3352 -3.4415 19 6 1.0239 -10.3143 -4.5926 20 7 0.7387 -11.6784 -4.1406 21 6 0.8821 -12.7140 -4.9912 22 8 1.2467 -12.5166 -6.1309 23 6 0.5892 -14.1172 -4.5261 24 6 1.7717 -15.0790 -4.3945 25 6 0.7703 -15.2494 -5.5391 26 6 0.5008 -3.3034 -2.4299 27 1 -0.3800 -3.3653 -3.0690 28 8 1.6133 -2.8339 -3.1941 29 6 0.2278 -2.3340 -1.2755 30 1 -0.4849 0.8401 0.0004 31 1 1.0469 -4.0693 0.8269 32 1 2.7400 -3.5177 0.7462 33 1 2.3137 -5.6009 -0.6071 34 1 2.9083 -4.2390 -1.5880 35 1 1.3439 -5.2973 -3.8282 36 1 0.4265 -7.6591 -4.7464 37 1 2.1218 -7.8449 -4.2369 38 1 1.4407 -9.5869 -2.6085 39 1 -0.2544 -9.4007 -3.1185 40 1 0.3679 -10.0628 -5.4260 41 1 2.0629 -10.2487 -4.9153 42 1 0.4474 -11.8363 -3.2290 43 1 -0.2211 -14.2134 -3.8035 44 1 2.7615 -14.6970 -4.6446 45 1 1.7397 -15.8083 -3.5849 46 1 0.0797 -16.0907 -5.4824 47 1 1.1017 -14.9795 -6.5418 48 1 1.4814 -1.9589 -3.5841 49 1 0.0984 -1.3254 -1.6682 50 1 -0.6744 -2.6408 -0.7463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -87.533799 kcal Electronic energy + Delta-G solvation = -29075.575915 eV Core-core repulsion = 24910.703474 eV Total energy + Delta-G solvation = -4164.872441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.30884 -39.83734 -38.05858 -36.85895 -35.69781 -34.81688 -34.31021 -32.98980 -32.03364 -29.59090 -29.10879 -27.64114 -25.22488 -24.23366 -22.88682 -22.53486 -22.14619 -21.60542 -20.47219 -20.00221 -19.33246 -17.82739 -17.43820 -16.96680 -16.34195 -16.14036 -16.01857 -15.56808 -15.45159 -15.03371 -14.93201 -14.51982 -14.07549 -13.94775 -13.81361 -13.57628 -13.27079 -12.96476 -12.87006 -12.52652 -12.45990 -12.07919 -12.01717 -12.00606 -11.77882 -11.28286 -11.20454 -11.15654 -11.08774 -10.97009 -10.81151 -10.61733 -10.49496 -10.23389 -10.20708 -10.08162 -9.81544 -9.59588 -9.43803 -9.20252 -8.71345 -8.51325 -6.70934 -5.83889 -3.24349 2.12950 2.70787 2.76059 3.34546 3.38169 3.41590 3.42443 3.43337 4.23642 4.33935 4.42178 4.45957 4.51546 4.67313 4.69959 4.71855 4.81216 5.10447 5.13725 5.19432 5.27307 5.27838 5.34331 5.39526 5.42360 5.44930 5.47894 5.55622 5.66905 5.79804 5.89429 5.92950 6.01730 6.07769 6.19457 6.26827 6.43881 6.53594 6.76850 6.84034 6.96008 7.12333 7.14380 7.40203 7.72192 7.76225 7.86358 8.21189 8.39227 8.40429 9.15533 9.78709 10.35508 11.24902 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.001592 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.638444 B =17580.956323 C =17767.034238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.000 4.000 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.719 5.719 15 C 0.508 3.492 16 O -0.547 6.547 17 C -0.138 4.138 18 C -0.115 4.115 19 C 0.118 3.882 20 N -0.725 5.725 21 C 0.541 3.459 22 O -0.542 6.542 23 C -0.197 4.197 24 C -0.153 4.153 25 C -0.148 4.148 26 C 0.073 3.927 27 H 0.043 0.957 28 O -0.560 6.560 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.375 0.625 49 H 0.096 0.904 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -23.847 -10.461 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.374 4.374 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.058 3.942 13 H 0.107 0.893 14 N -0.369 5.369 15 C 0.294 3.706 16 O -0.425 6.425 17 C -0.179 4.179 18 C -0.153 4.153 19 C -0.006 4.006 20 N -0.377 5.377 21 C 0.328 3.672 22 O -0.420 6.420 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.185 4.185 26 C 0.012 3.988 27 H 0.061 0.939 28 O -0.365 6.365 29 C 0.018 3.982 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.222 0.778 49 H 0.114 0.886 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.095 -24.382 -10.294 26.467 hybrid contribution 0.050 1.661 -0.048 1.662 sum 0.146 -22.721 -10.342 24.965 Atomic orbital electron populations 1.70013 1.05215 1.25619 1.54381 1.25011 0.95281 0.98373 1.01170 0.86349 0.78869 0.83254 0.78189 1.21058 1.21727 1.20917 1.19147 0.92715 0.84782 1.40741 0.91708 1.43862 1.35412 1.01573 1.49596 1.20898 0.97859 0.86446 0.92717 1.22293 0.97590 0.99240 0.98459 1.21000 0.99201 0.86545 0.87457 0.89286 1.46242 1.68320 1.06343 1.15986 1.20559 0.77298 0.83193 0.89537 1.90698 1.46734 1.77963 1.27093 1.21548 1.04283 0.94054 0.97981 1.21505 1.03872 0.92362 0.97588 1.21414 1.01601 0.80304 0.97264 1.45926 1.69528 1.06742 1.15470 1.19685 0.76738 0.85715 0.85088 1.90704 1.46671 1.85568 1.19032 1.22210 1.03817 0.89665 1.06125 1.22955 0.94238 1.00329 1.01483 1.22962 1.01982 0.97729 0.95870 1.22837 0.87630 0.94076 0.94303 0.93945 1.86343 1.41938 1.38195 1.70059 1.21441 0.89654 0.98501 0.88603 0.93592 0.96279 0.92463 0.92967 0.91250 0.76387 0.88719 0.88647 0.90333 0.90356 0.91270 0.91297 0.76178 0.85762 0.88212 0.87675 0.87858 0.87387 0.77806 0.88618 0.95489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.41 11.19 55.49 0.62 -24.79 16 2 C 0.00 -0.01 4.91 -17.43 -0.09 -0.10 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.54 9.58 -15.06 -0.14 -6.68 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.58 -14.16 2.94 -172.31 -0.51 -14.67 16 10 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 11 C -0.14 -2.52 5.51 -26.61 -0.15 -2.67 16 12 C 0.16 2.79 2.20 -67.88 -0.15 2.64 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 14 N -0.72 -9.92 5.05 -53.76 -0.27 -10.19 16 15 C 0.51 6.80 7.79 -10.99 -0.09 6.71 16 16 O -0.55 -9.37 15.64 5.56 0.09 -9.28 16 17 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 18 C -0.12 -0.95 4.62 -26.73 -0.12 -1.08 16 19 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 20 N -0.73 -5.51 5.56 -60.29 -0.33 -5.85 16 21 C 0.54 5.11 7.61 -10.98 -0.08 5.03 16 22 O -0.54 -7.25 16.26 5.56 0.09 -7.16 16 23 C -0.20 -1.27 6.19 -91.78 -0.57 -1.83 16 24 C -0.15 -0.83 10.24 -26.72 -0.27 -1.11 16 25 C -0.15 -0.90 10.05 -26.71 -0.27 -1.17 16 26 C 0.07 1.29 3.38 -26.61 -0.09 1.20 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 O -0.56 -9.62 12.09 -35.23 -0.43 -10.05 16 29 C 0.15 3.25 4.95 -3.71 -0.02 3.23 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 35 H 0.40 4.78 8.26 -40.82 -0.34 4.45 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 2.16 8.47 -40.82 -0.35 1.81 16 43 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.11 0.83 7.67 -51.93 -0.40 0.44 16 48 H 0.38 5.61 9.08 45.56 0.41 6.03 16 49 H 0.10 2.35 6.04 -51.93 -0.31 2.04 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -33.82 407.28 -9.52 -43.34 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.64 Total: 9.49 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.24 Total: 6.86 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.49 Total: -55.49 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.25 Total: -26.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.82 -9.52 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.198 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds