Wall clock time and date at job start Sat Apr 11 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00271 * 2 1 4 4 H 1.48502 * 109.47029 * 270.00033 * 3 2 1 5 5 H 1.48507 * 109.47201 * 29.99531 * 3 2 1 6 6 H 1.48499 * 109.47739 * 149.99889 * 3 2 1 7 7 C 1.38809 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00784 * 163.07853 * 7 2 1 9 9 N 1.36945 * 119.99703 * 343.08709 * 7 2 1 10 10 C 1.46927 * 120.62862 * 331.82406 * 9 7 2 11 11 C 1.53188 * 108.77560 * 233.59157 * 10 9 7 12 12 C 1.53049 * 109.31320 * 305.36516 * 11 10 9 13 13 H 1.09000 * 109.46022 * 301.36375 * 12 11 10 14 14 N 1.46498 * 109.46081 * 181.38636 * 12 11 10 15 15 C 1.34777 * 119.99947 * 85.00071 * 14 12 11 16 16 O 1.21280 * 119.99782 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00123 * 179.97438 * 15 14 12 18 18 C 1.52995 * 109.47067 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.46843 * 180.02562 * 18 17 15 20 20 N 1.46503 * 109.46783 * 180.02562 * 19 18 17 21 21 C 1.34780 * 120.00026 * 179.97438 * 20 19 18 22 22 O 1.21286 * 119.99515 * 0.02562 * 21 20 19 23 23 C 1.50697 * 120.00158 * 179.72022 * 21 20 19 24 24 C 1.53003 * 117.49900 * 248.89742 * 23 21 20 25 25 C 1.53000 * 117.49610 * 180.27563 * 23 21 20 26 26 C 1.53043 * 109.53583 * 61.36477 * 12 11 10 27 27 H 1.09001 * 109.49714 * 58.58604 * 26 12 11 28 28 O 1.42901 * 109.49585 * 178.68445 * 26 12 11 29 29 C 1.46924 * 120.63191 * 151.81088 * 9 7 2 30 30 H 0.96995 * 119.99778 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58173 * 113.80432 * 10 9 7 32 32 H 1.09003 * 109.58476 * 353.37664 * 10 9 7 33 33 H 1.09001 * 109.49573 * 185.41961 * 11 10 9 34 34 H 1.08994 * 109.50121 * 65.31855 * 11 10 9 35 35 H 0.96999 * 120.00211 * 265.00292 * 14 12 11 36 36 H 1.09002 * 109.46978 * 60.00186 * 17 15 14 37 37 H 1.08991 * 109.47157 * 300.00481 * 17 15 14 38 38 H 1.09002 * 109.47018 * 60.00274 * 18 17 15 39 39 H 1.08999 * 109.47566 * 299.99961 * 18 17 15 40 40 H 1.08996 * 109.47016 * 60.00473 * 19 18 17 41 41 H 1.09000 * 109.47071 * 299.99705 * 19 18 17 42 42 H 0.96997 * 120.00526 * 359.97438 * 20 19 18 43 43 H 1.08998 * 115.54895 * 34.61061 * 23 21 20 44 44 H 1.08994 * 117.49777 * 0.02562 * 24 23 21 45 45 H 1.09004 * 117.49442 * 145.02499 * 24 23 21 46 46 H 1.09004 * 117.49706 * 214.97706 * 25 23 21 47 47 H 1.09001 * 117.50552 * 0.02562 * 25 23 21 48 48 H 0.96701 * 113.99883 * 180.02562 * 28 26 12 49 49 H 1.08997 * 109.58277 * 246.19957 * 29 9 7 50 50 H 1.09010 * 109.58641 * 6.47289 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2261 -2.3400 1.2679 11 6 0.4975 -3.3192 2.4143 12 6 0.8119 -4.7009 1.8359 13 1 -0.0282 -5.0409 1.2304 14 7 1.0395 -5.6478 2.9304 15 6 -0.0052 -6.2709 3.5106 16 8 -1.1338 -6.0472 3.1271 17 6 0.2289 -7.2454 4.6360 18 6 -1.1125 -7.8061 5.1125 19 6 -0.8747 -8.7950 6.2555 20 7 -2.1592 -9.3324 6.7113 21 6 -2.1958 -10.2288 7.7172 22 8 -1.1655 -10.5901 8.2452 23 6 -3.5175 -10.7768 8.1902 24 6 -3.9966 -10.3620 9.5829 25 6 -3.4929 -11.7861 9.3398 26 6 2.0673 -4.6174 0.9645 27 1 2.9023 -4.2537 1.5634 28 8 2.3776 -5.9139 0.4498 29 6 1.8137 -3.6528 -0.1982 30 1 -0.4849 0.8400 -0.0004 31 1 -0.6770 -2.6404 0.7368 32 1 0.0994 -1.3342 1.6687 33 1 -0.3831 -3.3842 3.0534 34 1 1.3473 -2.9678 2.9994 35 1 1.9422 -5.8264 3.2374 36 1 0.7227 -6.7341 5.4625 37 1 0.8601 -8.0614 4.2846 38 1 -1.6067 -8.3172 4.2862 39 1 -1.7433 -6.9897 5.4642 40 1 -0.3808 -8.2835 7.0816 41 1 -0.2438 -9.6115 5.9042 42 1 -2.9832 -9.0431 6.2893 43 1 -4.2738 -10.9128 7.4172 44 1 -3.3560 -9.6924 10.1566 45 1 -5.0684 -10.2248 9.7262 46 1 -4.2334 -12.5859 9.3234 47 1 -2.5209 -12.0535 9.7543 48 1 3.1640 -5.9359 -0.1125 49 1 1.0400 -4.0603 -0.8489 50 1 2.7330 -3.5130 -0.7669 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099863015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:39 Heat of formation + Delta-G solvation = -89.208693 kcal Electronic energy + Delta-G solvation = -28978.836777 eV Core-core repulsion = 24813.891706 eV Total energy + Delta-G solvation = -4164.945070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.28459 -39.80910 -38.06809 -36.83640 -35.67498 -35.42909 -34.30953 -32.94978 -31.91541 -30.08429 -28.70276 -27.59273 -25.24830 -24.23032 -22.86634 -22.52789 -22.17728 -21.61261 -20.47142 -20.04067 -19.41092 -17.80354 -17.38182 -16.91480 -16.55798 -16.30499 -16.10091 -15.80397 -15.53890 -14.99080 -14.83414 -14.53916 -14.04501 -13.94720 -13.89153 -13.47378 -13.23878 -12.94478 -12.90068 -12.59020 -12.37261 -12.27056 -12.00679 -11.97381 -11.74511 -11.59574 -11.16939 -11.12968 -11.06902 -10.94850 -10.89174 -10.69935 -10.35392 -10.30562 -10.20727 -9.97883 -9.83623 -9.73528 -9.42240 -9.41249 -8.76412 -8.47760 -6.79372 -5.87787 -3.32297 2.15140 2.73317 2.82558 3.31759 3.38843 3.39568 3.41269 3.44410 4.25911 4.33939 4.36042 4.44283 4.47719 4.57576 4.70316 4.73733 4.75103 5.13894 5.15740 5.22017 5.27554 5.29435 5.30394 5.39998 5.41965 5.46467 5.49848 5.53371 5.68680 5.74948 5.83462 5.93140 5.94690 6.08909 6.10847 6.29974 6.45601 6.50531 6.63659 6.74393 6.85324 7.14897 7.25928 7.57339 7.70104 7.73119 7.88620 7.88789 8.35034 8.43765 9.10398 9.72741 10.28722 11.20849 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.001686 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.542858 B =16599.508830 C =17299.651159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.146 4.146 12 C 0.162 3.838 13 H 0.087 0.913 14 N -0.717 5.717 15 C 0.511 3.489 16 O -0.544 6.544 17 C -0.137 4.137 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.725 5.725 21 C 0.541 3.459 22 O -0.543 6.543 23 C -0.197 4.197 24 C -0.152 4.152 25 C -0.148 4.148 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.571 6.571 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.396 0.604 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.404 0.596 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.374 0.626 49 H 0.028 0.972 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -19.532 14.398 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.186 4.186 12 C 0.058 3.942 13 H 0.105 0.895 14 N -0.366 5.366 15 C 0.296 3.704 16 O -0.422 6.422 17 C -0.178 4.178 18 C -0.154 4.154 19 C -0.005 4.005 20 N -0.376 5.376 21 C 0.328 3.672 22 O -0.420 6.420 23 C -0.218 4.218 24 C -0.190 4.190 25 C -0.185 4.185 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.376 6.376 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.238 0.762 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.220 0.780 49 H 0.046 0.954 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.852 -19.625 14.811 24.886 hybrid contribution 0.980 1.182 -0.587 1.644 sum -2.872 -18.442 14.224 23.467 Atomic orbital electron populations 1.70030 1.05319 1.25778 1.53118 1.25078 0.95293 0.98546 1.00425 0.86286 0.79136 0.83467 0.77783 1.21286 1.21458 1.20434 1.19147 0.92539 0.84611 1.42713 0.91575 1.44033 1.35911 1.01158 1.50064 1.20828 0.88720 0.98263 0.87693 1.22596 1.00947 0.94385 1.00707 1.20992 0.97465 0.89186 0.86522 0.89526 1.46109 1.09258 1.44463 1.36789 1.20495 0.85116 0.81202 0.83544 1.90708 1.22736 1.64573 1.64151 1.21536 0.99238 0.99156 0.97848 1.21507 0.97310 0.98881 0.97679 1.21412 0.85284 0.96916 0.96936 1.45929 1.10357 1.44480 1.36872 1.19682 0.89885 0.78432 0.79215 1.90702 1.35124 1.59605 1.56607 1.22210 0.97671 1.07721 0.94224 1.22950 1.02000 0.98857 0.95187 1.22958 1.03908 0.92576 0.99105 1.22771 0.96035 0.83147 0.96146 0.92623 1.86476 1.50656 1.30520 1.69930 1.21527 0.98807 0.87444 0.92949 0.93413 0.95824 0.88914 0.91986 0.92387 0.77049 0.88741 0.88705 0.90342 0.90296 0.91308 0.91293 0.76157 0.85756 0.88214 0.87675 0.87864 0.87395 0.77988 0.95368 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.20 55.49 0.62 -25.01 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 3 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.21 2.99 -172.32 -0.52 -14.72 16 10 C 0.17 4.04 5.30 -3.71 -0.02 4.03 16 11 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 12 C 0.16 2.85 2.12 -67.88 -0.14 2.70 16 13 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 14 N -0.72 -10.05 4.92 -53.76 -0.26 -10.31 16 15 C 0.51 7.17 7.79 -10.99 -0.09 7.08 16 16 O -0.54 -9.88 15.64 5.56 0.09 -9.79 16 17 C -0.14 -1.25 5.70 -27.89 -0.16 -1.41 16 18 C -0.12 -1.02 4.62 -26.73 -0.12 -1.14 16 19 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 20 N -0.73 -5.78 5.56 -60.29 -0.33 -6.11 16 21 C 0.54 5.27 7.61 -10.99 -0.08 5.19 16 22 O -0.54 -7.38 16.26 5.55 0.09 -7.29 16 23 C -0.20 -1.32 6.19 -91.77 -0.57 -1.89 16 24 C -0.15 -0.87 10.23 -26.73 -0.27 -1.15 16 25 C -0.15 -0.94 10.04 -26.73 -0.27 -1.21 16 26 C 0.08 1.33 3.14 -26.61 -0.08 1.24 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.29 13.16 -35.23 -0.46 -8.75 16 29 C 0.12 2.41 6.14 -3.72 -0.02 2.39 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.49 8.60 -40.82 -0.35 4.14 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.40 2.34 8.47 -40.82 -0.35 1.99 16 43 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.11 0.85 7.67 -51.93 -0.40 0.46 16 48 H 0.37 3.86 9.08 45.56 0.41 4.27 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 1.13 7.93 -51.92 -0.41 0.72 16 LS Contribution 408.99 15.07 6.16 6.16 Total: -1.00 -34.65 408.99 -9.57 -44.21 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.69 Total: 8.71 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -2.23 Total: 6.86 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.49 Total: -56.16 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.29 Total: -25.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.65 -9.57 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099863015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.994 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds