Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 115.55307 * 2 1 4 4 C 1.50703 * 109.46956 * 279.63675 * 3 2 1 5 5 O 1.21280 * 119.99963 * 5.55023 * 4 3 2 6 6 N 1.34775 * 119.99872 * 185.53690 * 4 3 2 7 7 C 1.46500 * 119.99876 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.52038 * 35.13216 * 7 6 4 9 9 C 1.53114 * 109.52610 * 275.00239 * 7 6 4 10 10 C 1.53035 * 109.27957 * 182.44207 * 9 7 6 11 11 N 1.46843 * 109.52439 * 59.17801 * 10 9 7 12 12 C 1.46908 * 110.99852 * 174.16155 * 11 10 9 13 13 C 1.50693 * 109.47308 * 66.04753 * 12 11 10 14 14 O 1.21297 * 119.99708 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99911 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99998 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99613 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99629 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46820 * 90.00477 * 20 18 16 22 22 H 1.48501 * 109.47134 * 209.99850 * 20 18 16 23 23 H 1.48494 * 109.47343 * 330.00201 * 20 18 16 24 24 C 1.46846 * 111.20213 * 298.25833 * 11 10 9 25 25 C 1.53039 * 109.52058 * 61.73958 * 24 11 10 26 26 H 1.08995 * 109.50228 * 180.87920 * 25 24 11 27 27 O 1.42904 * 109.50149 * 60.76489 * 25 24 11 28 28 C 1.53006 * 117.51811 * 145.70401 * 2 1 3 29 29 C 1.52994 * 60.00213 * 107.47878 * 28 2 1 30 30 H 1.09005 * 109.47255 * 64.99561 * 1 2 3 31 31 H 1.08993 * 109.47362 * 184.99998 * 1 2 3 32 32 H 1.09003 * 109.46969 * 305.00533 * 1 2 3 33 33 H 1.09004 * 109.47247 * 159.64245 * 3 2 1 34 34 H 1.08991 * 109.47089 * 39.64122 * 3 2 1 35 35 H 0.97001 * 119.99959 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.49930 * 62.50172 * 9 7 6 37 37 H 1.09003 * 109.50296 * 302.38387 * 9 7 6 38 38 H 1.09007 * 109.45943 * 299.16366 * 10 9 7 39 39 H 1.08997 * 109.46091 * 179.19815 * 10 9 7 40 40 H 1.09003 * 109.46612 * 186.05237 * 12 11 10 41 41 H 1.09002 * 109.46614 * 306.04347 * 12 11 10 42 42 H 0.97000 * 119.99789 * 0.02562 * 15 13 12 43 43 H 0.96998 * 120.00151 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.46420 * 181.75261 * 24 11 10 45 45 H 1.08997 * 109.45732 * 301.72829 * 24 11 10 46 46 H 0.96700 * 113.99948 * 60.19659 * 27 25 24 47 47 H 1.08998 * 117.49942 * 214.97166 * 28 2 1 48 48 H 1.08996 * 117.49529 * 359.97438 * 28 2 1 49 49 H 1.09004 * 117.50060 * 252.51351 * 29 28 2 50 50 H 1.09005 * 117.49927 * 107.48825 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1920 1.9361 -1.4008 5 8 1.6247 1.3389 -2.2910 6 7 2.8240 3.0970 -1.6643 7 6 2.8256 3.6375 -3.0259 8 1 1.8742 3.4127 -3.5081 9 6 3.9672 3.0048 -3.8264 10 6 4.0016 3.6177 -5.2282 11 7 4.1984 5.0692 -5.1245 12 6 4.3749 5.6727 -6.4522 13 6 3.0963 5.5396 -7.2385 14 8 2.1329 4.9950 -6.7420 15 7 3.0232 6.0256 -8.4935 16 6 1.8598 5.9049 -9.2087 17 1 1.0017 5.4208 -8.7663 18 6 1.7847 6.4054 -10.5027 19 7 0.6694 6.2902 -11.1880 20 14 3.2687 7.2434 -11.2676 21 1 4.0988 6.2336 -11.9722 22 1 2.8116 8.2717 -12.2366 23 1 4.0753 7.8910 -10.2022 24 6 3.0902 5.7050 -4.4006 25 6 3.0285 5.1544 -2.9740 26 1 2.1963 5.6149 -2.4418 27 8 4.2512 5.4492 -2.2956 28 6 2.2369 -1.1210 0.7646 29 6 2.2364 -1.1208 -0.7653 30 1 -0.3634 0.4344 -0.9314 31 1 -0.3634 -1.0237 0.0896 32 1 -0.3633 0.5895 0.8418 33 1 3.2159 1.2926 0.3575 34 1 1.6327 2.0494 0.6556 35 1 3.2779 3.5745 -0.9523 36 1 3.8054 1.9296 -3.9032 37 1 4.9146 3.1958 -3.3223 38 1 3.0591 3.4144 -5.7367 39 1 4.8224 3.1796 -5.7960 40 1 4.6251 6.7278 -6.3412 41 1 5.1806 5.1617 -6.9793 42 1 3.7938 6.4607 -8.8906 43 1 0.6167 6.6399 -12.0912 44 1 3.2490 6.7828 -4.3672 45 1 2.1521 5.4918 -4.9130 46 1 4.4443 6.3941 -2.2257 47 1 3.1720 -0.8751 1.2677 48 1 1.6119 -1.8585 1.2681 49 1 1.6111 -1.8583 -1.2686 50 1 3.1713 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099927910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -87.224503 kcal Electronic energy + Delta-G solvation = -30490.902301 eV Core-core repulsion = 26326.043272 eV Total energy + Delta-G solvation = -4164.859029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38800 -39.51923 -38.22390 -37.37916 -35.56297 -34.57455 -33.88173 -31.86895 -31.54989 -29.87499 -29.56005 -28.31270 -26.94361 -24.47793 -23.08202 -22.64143 -22.47658 -20.64397 -20.03977 -19.50214 -19.07223 -18.38734 -17.07137 -16.79068 -16.43170 -16.03558 -15.81507 -15.25105 -15.15153 -14.97745 -14.57889 -14.46094 -14.22670 -13.97649 -13.83620 -13.40909 -13.13535 -12.95205 -12.85917 -12.65770 -12.49571 -12.41161 -12.24590 -11.97492 -11.68808 -11.53275 -11.42237 -11.39667 -11.21887 -11.07916 -10.81271 -10.63888 -10.45687 -10.39948 -10.06567 -10.04637 -9.88980 -9.57356 -9.50884 -9.32384 -8.94578 -8.24617 -7.50638 -6.38720 -3.90135 2.67723 2.97443 3.02277 3.05158 3.10814 3.60566 3.68871 4.03791 4.08957 4.38396 4.40400 4.55409 4.61836 4.69157 4.79015 4.82472 4.95726 5.02723 5.13205 5.21916 5.24798 5.33683 5.42480 5.44541 5.57127 5.65804 5.66008 5.71648 5.76270 5.78783 5.81203 5.86765 5.87444 5.88068 5.98503 6.11163 6.12558 6.14738 6.24878 6.43663 6.51953 6.66785 7.22531 7.31920 7.49073 7.56144 7.68636 8.07692 8.28872 8.49891 8.86826 9.34440 9.72370 10.73992 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002336 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.938501 B =11985.698560 C =12765.216790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.104 4.104 4 C 0.508 3.492 5 O -0.528 6.528 6 N -0.723 5.723 7 C 0.157 3.843 8 H 0.098 0.902 9 C -0.114 4.114 10 C 0.044 3.956 11 N -0.502 5.502 12 C 0.038 3.962 13 C 0.413 3.587 14 O -0.576 6.576 15 N -0.582 5.582 16 C -0.308 4.308 17 H 0.119 0.881 18 C 0.042 3.958 19 N -0.877 5.877 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.003 3.997 25 C 0.107 3.893 26 H 0.059 0.941 27 O -0.557 6.557 28 C -0.180 4.180 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.402 0.598 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.371 0.629 43 H 0.274 0.726 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.376 0.624 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.400 -5.067 23.107 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.294 3.706 5 O -0.404 6.404 6 N -0.375 5.375 7 C 0.053 3.947 8 H 0.116 0.884 9 C -0.153 4.153 10 C -0.084 4.084 11 N -0.225 5.225 12 C -0.094 4.094 13 C 0.199 3.801 14 O -0.462 6.462 15 N -0.220 5.220 16 C -0.437 4.437 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.517 5.517 20 Si 0.707 3.293 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.126 4.126 25 C 0.047 3.953 26 H 0.076 0.924 27 O -0.362 6.362 28 C -0.217 4.217 29 C -0.193 4.193 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.236 0.764 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.204 0.796 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.223 0.777 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.662 -6.405 22.895 24.978 hybrid contribution 0.599 1.569 -1.121 2.019 sum 8.261 -4.836 21.773 23.785 Atomic orbital electron populations 1.21302 0.91719 1.01686 1.02321 1.21030 0.95043 0.89376 1.05643 1.21215 1.02351 0.96077 0.94774 1.20644 0.78334 0.80737 0.90866 1.90731 1.43632 1.58531 1.47507 1.46052 1.55875 1.24152 1.11431 1.21035 1.00466 0.90723 0.82510 0.88402 1.21804 0.98773 0.99265 0.95469 1.22197 1.02470 0.87520 0.96247 1.62428 1.41575 1.03947 1.14517 1.22111 0.96333 1.01237 0.89724 1.21096 0.90956 0.84803 0.83238 1.90434 1.39100 1.47596 1.69025 1.42416 1.13862 1.52163 1.13575 1.19456 0.91602 1.36659 0.95995 0.86320 1.25091 0.97140 0.97657 0.96261 1.69627 1.25421 1.45110 1.11498 0.86658 0.82565 0.80123 0.79981 1.19528 1.20110 1.19411 1.23087 0.97514 0.98206 0.93791 1.22078 0.86490 0.94493 0.92193 0.92355 1.86417 1.41354 1.29562 1.78873 1.23177 1.02127 1.01207 0.95169 1.22879 1.02295 1.00853 0.93264 0.91241 0.92626 0.92629 0.89126 0.88541 0.76355 0.91662 0.90815 0.91266 0.91368 0.89244 0.89168 0.79587 0.91509 0.91152 0.88676 0.77706 0.88984 0.88817 0.88781 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.66 37.15 0.36 -0.71 16 2 C -0.11 -1.04 1.59 -154.51 -0.25 -1.29 16 3 C -0.10 -0.89 5.64 -27.88 -0.16 -1.05 16 4 C 0.51 6.20 7.65 -10.98 -0.08 6.11 16 5 O -0.53 -8.63 14.62 5.56 0.08 -8.55 16 6 N -0.72 -8.11 5.05 -53.69 -0.27 -8.38 16 7 C 0.16 2.16 2.30 -67.81 -0.16 2.00 16 8 H 0.10 1.64 7.58 -51.93 -0.39 1.25 16 9 C -0.11 -1.65 5.51 -26.65 -0.15 -1.80 16 10 C 0.04 0.72 5.09 -3.84 -0.02 0.70 16 11 N -0.50 -7.73 4.74 -236.11 -1.12 -8.85 16 12 C 0.04 0.61 5.86 -4.97 -0.03 0.58 16 13 C 0.41 8.88 7.20 -10.99 -0.08 8.81 16 14 O -0.58 -14.30 11.20 5.54 0.06 -14.23 16 15 N -0.58 -13.46 5.09 -10.97 -0.06 -13.51 16 16 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 17 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 20 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 24 C 0.00 0.04 4.64 -3.83 -0.02 0.02 16 25 C 0.11 1.31 3.42 -26.65 -0.09 1.22 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 O -0.56 -5.86 12.06 -35.23 -0.42 -6.28 16 28 C -0.18 -1.40 9.87 -26.73 -0.26 -1.67 16 29 C -0.16 -1.57 9.19 -26.73 -0.25 -1.81 16 30 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 31 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.62 7.95 -51.93 -0.41 0.21 16 34 H 0.10 0.66 8.13 -51.93 -0.42 0.24 16 35 H 0.40 3.61 8.12 -40.82 -0.33 3.28 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 38 H 0.07 1.38 6.00 -51.92 -0.31 1.07 16 39 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 42 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 45 H 0.10 1.80 5.36 -51.93 -0.28 1.52 16 46 H 0.38 2.71 9.08 45.56 0.41 3.13 16 47 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -33.27 394.96 -8.53 -41.80 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -7.38 Total: 18.85 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.43 Total: 3.45 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.67 Total: -55.36 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.28 Total: -29.07 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.27 -8.53 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.426 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds