Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 115.55307 * 2 1 4 4 C 1.50703 * 109.46956 * 279.63675 * 3 2 1 5 5 O 1.21280 * 119.99963 * 5.55023 * 4 3 2 6 6 N 1.34775 * 119.99872 * 185.53690 * 4 3 2 7 7 C 1.46500 * 119.99876 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.52038 * 35.13216 * 7 6 4 9 9 C 1.53114 * 109.52610 * 275.00239 * 7 6 4 10 10 C 1.53035 * 109.27957 * 182.44207 * 9 7 6 11 11 N 1.46843 * 109.52439 * 59.17801 * 10 9 7 12 12 C 1.46908 * 110.99852 * 174.16155 * 11 10 9 13 13 C 1.50693 * 109.47308 * 66.04753 * 12 11 10 14 14 O 1.21297 * 119.99708 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00101 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99911 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99998 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99613 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99629 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00237 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.46820 * 90.00477 * 20 18 16 22 22 H 1.48501 * 109.47134 * 209.99850 * 20 18 16 23 23 H 1.48494 * 109.47343 * 330.00201 * 20 18 16 24 24 C 1.46846 * 111.20213 * 298.25833 * 11 10 9 25 25 C 1.53039 * 109.52058 * 61.73958 * 24 11 10 26 26 H 1.08995 * 109.50228 * 180.87920 * 25 24 11 27 27 O 1.42904 * 109.50149 * 60.76489 * 25 24 11 28 28 C 1.53006 * 117.51811 * 145.70401 * 2 1 3 29 29 C 1.52994 * 60.00213 * 107.47878 * 28 2 1 30 30 H 1.09005 * 109.47255 * 64.99561 * 1 2 3 31 31 H 1.08993 * 109.47362 * 184.99998 * 1 2 3 32 32 H 1.09003 * 109.46969 * 305.00533 * 1 2 3 33 33 H 1.09004 * 109.47247 * 159.64245 * 3 2 1 34 34 H 1.08991 * 109.47089 * 39.64122 * 3 2 1 35 35 H 0.97001 * 119.99959 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.49930 * 62.50172 * 9 7 6 37 37 H 1.09003 * 109.50296 * 302.38387 * 9 7 6 38 38 H 1.09007 * 109.45943 * 299.16366 * 10 9 7 39 39 H 1.08997 * 109.46091 * 179.19815 * 10 9 7 40 40 H 1.09003 * 109.46612 * 186.05237 * 12 11 10 41 41 H 1.09002 * 109.46614 * 306.04347 * 12 11 10 42 42 H 0.97000 * 119.99789 * 0.02562 * 15 13 12 43 43 H 0.96998 * 120.00151 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.46420 * 181.75261 * 24 11 10 45 45 H 1.08997 * 109.45732 * 301.72829 * 24 11 10 46 46 H 0.96700 * 113.99948 * 60.19659 * 27 25 24 47 47 H 1.08998 * 117.49942 * 214.97166 * 28 2 1 48 48 H 1.08996 * 117.49529 * 359.97438 * 28 2 1 49 49 H 1.09004 * 117.50060 * 252.51351 * 29 28 2 50 50 H 1.09005 * 117.49927 * 107.48825 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1920 1.9361 -1.4008 5 8 1.6247 1.3389 -2.2910 6 7 2.8240 3.0970 -1.6643 7 6 2.8256 3.6375 -3.0259 8 1 1.8742 3.4127 -3.5081 9 6 3.9672 3.0048 -3.8264 10 6 4.0016 3.6177 -5.2282 11 7 4.1984 5.0692 -5.1245 12 6 4.3749 5.6727 -6.4522 13 6 3.0963 5.5396 -7.2385 14 8 2.1329 4.9950 -6.7420 15 7 3.0232 6.0256 -8.4935 16 6 1.8598 5.9049 -9.2087 17 1 1.0017 5.4208 -8.7663 18 6 1.7847 6.4054 -10.5027 19 7 0.6694 6.2902 -11.1880 20 14 3.2687 7.2434 -11.2676 21 1 4.0988 6.2336 -11.9722 22 1 2.8116 8.2717 -12.2366 23 1 4.0753 7.8910 -10.2022 24 6 3.0902 5.7050 -4.4006 25 6 3.0285 5.1544 -2.9740 26 1 2.1963 5.6149 -2.4418 27 8 4.2512 5.4492 -2.2956 28 6 2.2369 -1.1210 0.7646 29 6 2.2364 -1.1208 -0.7653 30 1 -0.3634 0.4344 -0.9314 31 1 -0.3634 -1.0237 0.0896 32 1 -0.3633 0.5895 0.8418 33 1 3.2159 1.2926 0.3575 34 1 1.6327 2.0494 0.6556 35 1 3.2779 3.5745 -0.9523 36 1 3.8054 1.9296 -3.9032 37 1 4.9146 3.1958 -3.3223 38 1 3.0591 3.4144 -5.7367 39 1 4.8224 3.1796 -5.7960 40 1 4.6251 6.7278 -6.3412 41 1 5.1806 5.1617 -6.9793 42 1 3.7938 6.4607 -8.8906 43 1 0.6167 6.6399 -12.0912 44 1 3.2490 6.7828 -4.3672 45 1 2.1521 5.4918 -4.9130 46 1 4.4443 6.3941 -2.2257 47 1 3.1720 -0.8751 1.2677 48 1 1.6119 -1.8585 1.2681 49 1 1.6111 -1.8583 -1.2686 50 1 3.1713 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099927910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -116.112809 kcal Electronic energy + Delta-G solvation = -30492.154992 eV Core-core repulsion = 26326.043272 eV Total energy + Delta-G solvation = -4166.111720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53832 -40.79335 -39.51118 -38.32411 -36.82783 -35.86979 -35.52241 -33.82536 -32.78512 -30.94584 -30.50141 -29.20528 -28.31012 -26.19704 -24.31097 -23.81392 -23.27565 -21.65607 -21.36749 -21.18984 -20.25671 -19.83340 -18.22658 -17.82128 -17.57699 -17.50394 -16.83016 -16.68233 -16.35669 -16.14817 -15.84288 -15.70187 -15.57009 -15.13672 -15.01586 -14.80709 -14.58690 -14.31357 -14.03295 -13.87331 -13.71896 -13.57676 -13.25325 -13.10102 -12.91843 -12.65643 -12.49395 -12.43042 -12.40083 -12.34492 -12.16784 -12.09133 -11.99566 -11.59273 -11.44446 -11.23229 -11.04014 -10.87954 -10.79872 -10.42221 -10.24766 -10.00797 -9.03608 -8.45154 -6.05906 1.27880 1.33189 1.42494 1.72225 1.88945 2.13366 2.20185 2.86671 2.94140 2.97015 3.11740 3.35815 3.68369 3.70557 3.82765 3.87100 3.93117 4.06391 4.09830 4.15624 4.20929 4.24440 4.40389 4.49559 4.55982 4.59898 4.62579 4.69399 4.70832 4.81037 4.85903 4.90836 4.95357 4.96370 4.99881 5.06482 5.10337 5.16161 5.27492 5.33590 5.38282 5.49573 5.52719 5.87066 5.97559 6.01332 6.54274 6.66379 6.84937 6.98320 7.35601 7.37353 7.92349 8.72497 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002336 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.938501 B =11985.698560 C =12765.216790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.096 4.096 4 C 0.503 3.497 5 O -0.579 6.579 6 N -0.709 5.709 7 C 0.158 3.842 8 H 0.055 0.945 9 C -0.101 4.101 10 C 0.046 3.954 11 N -0.484 5.484 12 C 0.045 3.955 13 C 0.415 3.585 14 O -0.614 6.614 15 N -0.587 5.587 16 C -0.328 4.328 17 H 0.052 0.948 18 C -0.017 4.017 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.227 1.227 24 C 0.001 3.999 25 C 0.126 3.874 26 H 0.074 0.926 27 O -0.552 6.552 28 C -0.149 4.149 29 C -0.181 4.181 30 H 0.037 0.963 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.418 0.582 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.079 0.921 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.396 0.604 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 -3.229 25.875 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.135 4.135 4 C 0.291 3.709 5 O -0.458 6.458 6 N -0.362 5.362 7 C 0.052 3.948 8 H 0.073 0.927 9 C -0.140 4.140 10 C -0.083 4.083 11 N -0.206 5.206 12 C -0.087 4.087 13 C 0.203 3.797 14 O -0.500 6.500 15 N -0.228 5.228 16 C -0.458 4.458 17 H 0.070 0.930 18 C -0.216 4.216 19 N -0.575 5.575 20 Si 0.786 3.214 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.150 1.150 24 C -0.128 4.128 25 C 0.065 3.935 26 H 0.092 0.908 27 O -0.360 6.360 28 C -0.186 4.186 29 C -0.218 4.218 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.040 0.960 39 H 0.098 0.902 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.246 0.754 47 H 0.130 0.870 48 H 0.123 0.877 49 H 0.099 0.901 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.954 -4.541 25.736 28.738 hybrid contribution -0.833 0.901 -1.879 2.244 sum 11.121 -3.640 23.857 26.573 Atomic orbital electron populations 1.21279 0.92221 1.02065 1.01352 1.21173 0.94949 0.90127 1.06258 1.21269 1.04306 0.95717 0.92222 1.21427 0.77151 0.80317 0.92035 1.90724 1.45717 1.59916 1.49435 1.45895 1.55641 1.23969 1.10683 1.20768 0.98111 0.92325 0.83603 0.92700 1.21655 0.99556 0.98145 0.94621 1.22135 1.00394 0.88639 0.97121 1.62543 1.41031 1.03145 1.13911 1.22347 0.93333 1.03993 0.88979 1.22434 0.92427 0.82176 0.82710 1.90478 1.41407 1.48325 1.69805 1.42251 1.12983 1.53590 1.13998 1.18989 0.91858 1.37726 0.97200 0.93021 1.26186 1.01331 0.97953 0.96126 1.69816 1.28730 1.46740 1.12224 0.85345 0.77687 0.78827 0.79535 1.18329 1.20061 1.15047 1.23109 0.95051 0.99704 0.94936 1.21727 0.88006 0.92874 0.90869 0.90801 1.86383 1.40006 1.31606 1.78014 1.23243 1.02537 0.99684 0.93131 1.22843 1.01960 1.01729 0.95305 0.94432 0.92158 0.90776 0.86429 0.86015 0.74472 0.93323 0.89349 0.96002 0.90226 0.85517 0.86332 0.77443 0.91155 0.88838 0.93383 0.75401 0.86976 0.87702 0.90067 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.66 71.98 0.69 -1.41 16 2 C -0.12 -2.22 1.59 -52.18 -0.08 -2.30 16 3 C -0.10 -1.44 5.64 29.85 0.17 -1.27 16 4 C 0.50 12.22 7.65 87.66 0.67 12.89 16 5 O -0.58 -20.20 14.62 -3.03 -0.04 -20.25 16 6 N -0.71 -15.21 5.05 -442.15 -2.23 -17.44 16 7 C 0.16 4.39 2.30 45.07 0.10 4.49 16 8 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 9 C -0.10 -2.93 5.51 30.64 0.17 -2.76 16 10 C 0.05 1.51 5.09 86.33 0.44 1.95 16 11 N -0.48 -14.05 4.74 -900.93 -4.27 -18.32 16 12 C 0.05 1.33 5.86 85.55 0.50 1.83 16 13 C 0.41 18.03 7.20 87.66 0.63 18.66 16 14 O -0.61 -32.49 11.20 -3.08 -0.03 -32.52 16 15 N -0.59 -27.19 5.09 -306.99 -1.56 -28.75 16 16 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 17 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 18 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 19 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 20 Si 0.97 38.64 27.74 68.60 1.90 40.54 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 24 C 0.00 0.02 4.64 86.33 0.40 0.42 16 25 C 0.13 2.86 3.42 30.65 0.10 2.97 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 O -0.55 -9.45 12.06 -148.98 -1.80 -11.25 16 28 C -0.15 -1.98 9.87 30.59 0.30 -1.68 16 29 C -0.18 -3.68 9.19 30.59 0.28 -3.39 16 30 H 0.04 0.93 7.60 -2.38 -0.02 0.92 16 31 H 0.06 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.17 7.95 -2.39 -0.02 1.15 16 34 H 0.12 1.26 8.13 -2.39 -0.02 1.24 16 35 H 0.42 6.33 8.12 -92.71 -0.75 5.58 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 2.33 7.80 -2.39 -0.02 2.31 16 38 H 0.02 0.93 6.00 -2.38 -0.01 0.92 16 39 H 0.08 2.39 8.06 -2.39 -0.02 2.37 16 40 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.12 2.93 8.06 -2.39 -0.02 2.91 16 42 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 43 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 45 H 0.05 1.91 5.36 -2.39 -0.01 1.90 16 46 H 0.40 3.77 9.08 -74.06 -0.67 3.10 16 47 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -83.12 394.96 -3.07 -86.19 By element: Atomic # 1 Polarization: 47.75 SS G_CDS: -1.04 Total: 46.70 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.71 Total: 11.56 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.76 Total: -120.97 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -1.88 Total: -64.02 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -83.12 -3.07 -86.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.924 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds