Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 115.55055 * 2 1 4 4 C 1.50693 * 109.46835 * 279.24158 * 3 2 1 5 5 O 1.21283 * 120.00085 * 5.48134 * 4 3 2 6 6 N 1.34783 * 119.99630 * 185.47505 * 4 3 2 7 7 C 1.46501 * 119.99533 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.52676 * 324.87889 * 7 6 4 9 9 C 1.53122 * 109.52075 * 85.00386 * 7 6 4 10 10 C 1.53032 * 109.27911 * 62.24708 * 9 7 6 11 11 N 1.46846 * 109.52348 * 59.17840 * 10 9 7 12 12 C 1.46905 * 111.00357 * 174.15711 * 11 10 9 13 13 C 1.50697 * 109.47159 * 293.95725 * 12 11 10 14 14 O 1.21296 * 119.99996 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00004 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00067 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99688 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00303 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47118 * 90.00488 * 20 18 16 22 22 H 1.48502 * 109.47029 * 210.00374 * 20 18 16 23 23 H 1.48492 * 109.47125 * 330.00095 * 20 18 16 24 24 C 1.46845 * 111.19926 * 298.25990 * 11 10 9 25 25 C 1.53036 * 109.52660 * 61.74100 * 24 11 10 26 26 H 1.09001 * 109.50328 * 60.76117 * 25 24 11 27 27 O 1.42898 * 109.50497 * 180.88483 * 25 24 11 28 28 C 1.52999 * 117.49845 * 214.32114 * 2 1 3 29 29 C 1.52998 * 60.03343 * 252.48207 * 28 2 1 30 30 H 1.09000 * 109.47513 * 200.51771 * 1 2 3 31 31 H 1.09001 * 109.47135 * 320.51880 * 1 2 3 32 32 H 1.08997 * 109.46858 * 80.51610 * 1 2 3 33 33 H 1.09004 * 109.47075 * 39.24515 * 3 2 1 34 34 H 1.09001 * 109.46557 * 159.24228 * 3 2 1 35 35 H 0.96992 * 120.00002 * 0.02562 * 6 4 3 36 36 H 1.09007 * 109.50161 * 182.18852 * 9 7 6 37 37 H 1.08995 * 109.50351 * 302.30695 * 9 7 6 38 38 H 1.09000 * 109.46418 * 179.19223 * 10 9 7 39 39 H 1.09001 * 109.46652 * 299.16247 * 10 9 7 40 40 H 1.09002 * 109.46395 * 53.95298 * 12 11 10 41 41 H 1.08998 * 109.47468 * 173.95037 * 12 11 10 42 42 H 0.97001 * 119.99785 * 0.02562 * 15 13 12 43 43 H 0.97004 * 120.00370 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.46289 * 181.76225 * 24 11 10 45 45 H 1.08997 * 109.46057 * 301.72269 * 24 11 10 46 46 H 0.96699 * 113.99732 * 299.80191 * 27 25 24 47 47 H 1.08998 * 117.49539 * 359.97438 * 28 2 1 48 48 H 1.09007 * 117.49297 * 144.97733 * 28 2 1 49 49 H 1.08997 * 117.49867 * 107.50363 * 29 28 2 50 50 H 1.09005 * 117.49389 * 252.52387 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2007 1.9319 -1.4023 5 8 1.6400 1.3314 -2.2945 6 7 2.8333 3.0927 -1.6650 7 6 2.8433 3.6292 -3.0283 8 1 2.8919 2.8075 -3.7428 9 6 1.5673 4.4410 -3.2680 10 6 1.5340 5.6271 -2.3016 11 7 2.7183 6.4683 -2.5162 12 6 2.6509 7.6898 -1.7028 13 6 1.5092 8.5493 -2.1808 14 8 0.8197 8.1809 -3.1083 15 7 1.2541 9.7274 -1.5778 16 6 0.2158 10.5097 -2.0131 17 1 -0.3981 10.1817 -2.8388 18 6 -0.0468 11.7244 -1.3918 19 7 0.7005 12.1238 -0.3873 20 14 -1.4621 12.7899 -1.9844 21 1 -2.6978 12.4278 -1.2447 22 1 -1.1409 14.2194 -1.7417 23 1 -1.6726 12.5698 -3.4377 24 6 3.9547 5.7236 -2.2459 25 6 4.0603 4.5403 -3.2107 26 1 4.0889 4.9084 -4.2363 27 8 5.2533 3.8040 -2.9338 28 6 2.2365 -1.1208 -0.7652 29 6 2.2375 -1.1215 0.7648 30 1 -0.3634 -0.9625 0.3602 31 1 -0.3633 0.7932 0.6534 32 1 -0.3633 0.1693 -1.0136 33 1 1.6286 2.0515 0.6502 34 1 3.2136 1.2936 0.3642 35 1 3.2819 3.5728 -0.9516 36 1 1.5567 4.8075 -4.2946 37 1 0.6962 3.8083 -3.0978 38 1 0.6337 6.2153 -2.4794 39 1 1.5307 5.2595 -1.2754 40 1 2.4916 7.4222 -0.6582 41 1 3.5859 8.2418 -1.7979 42 1 1.8058 10.0222 -0.8364 43 1 0.5175 12.9720 0.0462 44 1 4.8125 6.3819 -2.3832 45 1 3.9401 5.3556 -1.2201 46 1 6.0653 4.3202 -3.0298 47 1 1.6112 -1.8584 -1.2682 48 1 3.1712 -0.8746 -1.2690 49 1 1.6130 -1.8595 1.2681 50 1 3.1729 -0.8754 1.2675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099927911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -93.351103 kcal Electronic energy + Delta-G solvation = -30381.700077 eV Core-core repulsion = 26216.575378 eV Total energy + Delta-G solvation = -4165.124699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56718 -39.30525 -38.16088 -37.40946 -36.06604 -34.54636 -33.84384 -31.81784 -31.21445 -29.86279 -29.50314 -28.26599 -27.14125 -24.69263 -23.15521 -22.73135 -22.59795 -21.48226 -19.33685 -19.23370 -19.09664 -17.93925 -17.36108 -17.27274 -16.26039 -15.96772 -15.84874 -15.50296 -15.07638 -14.92989 -14.67287 -14.46042 -14.08041 -14.02341 -13.90256 -13.71509 -13.31740 -13.02093 -12.93701 -12.68001 -12.51361 -12.43292 -12.16514 -12.12513 -11.70861 -11.57834 -11.42420 -11.40164 -11.27153 -11.13113 -10.79882 -10.50033 -10.47670 -10.41357 -10.26663 -10.16179 -10.08055 -9.59030 -9.51197 -9.06338 -8.48740 -8.02878 -7.93176 -6.45256 -3.86092 2.65351 3.01791 3.15329 3.24457 3.30147 3.63154 3.72316 3.85619 4.06295 4.21883 4.38753 4.52962 4.62887 4.66931 4.74703 4.78136 4.92777 4.99924 5.06800 5.21202 5.23548 5.24786 5.33741 5.36925 5.43057 5.45780 5.58502 5.64609 5.65074 5.71526 5.75577 5.77979 5.78687 5.83291 5.92161 5.95972 5.97702 6.12788 6.20678 6.27311 6.44924 6.50420 7.15547 7.21831 7.45472 7.46497 7.52086 8.02564 8.23089 8.57660 9.14597 9.50262 10.01749 10.72395 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002343 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.232944 B =11946.501448 C =12872.752662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.106 4.106 4 C 0.515 3.485 5 O -0.533 6.533 6 N -0.718 5.718 7 C 0.156 3.844 8 H 0.092 0.908 9 C -0.121 4.121 10 C 0.053 3.947 11 N -0.510 5.510 12 C 0.047 3.953 13 C 0.443 3.557 14 O -0.576 6.576 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.024 3.976 25 C 0.101 3.899 26 H 0.081 0.919 27 O -0.563 6.563 28 C -0.156 4.156 29 C -0.180 4.180 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.023 0.977 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.379 0.621 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -20.014 3.526 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.301 3.699 5 O -0.409 6.409 6 N -0.370 5.370 7 C 0.051 3.949 8 H 0.110 0.890 9 C -0.160 4.160 10 C -0.074 4.074 11 N -0.236 5.236 12 C -0.084 4.084 13 C 0.228 3.772 14 O -0.460 6.460 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.105 4.105 25 C 0.041 3.959 26 H 0.099 0.901 27 O -0.368 6.368 28 C -0.193 4.193 29 C -0.217 4.217 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.232 0.768 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.052 0.948 46 H 0.226 0.774 47 H 0.111 0.889 48 H 0.108 0.892 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.605 -20.865 1.968 22.295 hybrid contribution 0.452 1.463 1.455 2.113 sum 8.057 -19.402 3.423 21.285 Atomic orbital electron populations 1.21317 0.91643 1.01405 1.02642 1.21033 0.95040 0.89307 1.05562 1.21250 1.02408 0.96134 0.94793 1.20555 0.78157 0.80286 0.90903 1.90687 1.43890 1.58943 1.47399 1.45995 1.56076 1.23940 1.10972 1.20997 0.93440 0.95976 0.84476 0.89004 1.21924 0.96631 0.95958 1.01517 1.22261 0.95298 0.93806 0.96049 1.61458 1.01075 1.05192 1.55859 1.21841 0.99989 0.91623 0.94921 1.19696 0.87518 0.83577 0.86412 1.90496 1.51843 1.72835 1.30834 1.41868 1.29707 1.16918 1.31523 1.19692 1.07727 0.99346 1.16026 0.87885 1.25260 0.98904 0.97673 0.96098 1.69608 1.39417 1.22745 1.22558 0.85862 0.80564 0.78603 0.79304 1.20414 1.20922 1.19383 1.22793 0.94431 0.95691 0.97558 1.22061 0.84594 0.90276 0.98920 0.90144 1.86541 1.15882 1.41237 1.93102 1.22859 1.02238 1.00879 0.93319 1.23227 1.02193 1.01132 0.95099 0.92681 0.92446 0.91348 0.88438 0.89159 0.76840 0.89682 0.90472 0.87510 0.95898 0.93477 0.89335 0.77524 0.91861 0.90304 0.94794 0.77411 0.88860 0.89163 0.88779 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.69 37.16 0.36 -0.71 16 2 C -0.11 -1.03 1.59 -154.47 -0.25 -1.27 16 3 C -0.11 -0.95 5.64 -27.88 -0.16 -1.11 16 4 C 0.51 6.14 7.65 -10.99 -0.08 6.05 16 5 O -0.53 -8.10 14.82 5.55 0.08 -8.02 16 6 N -0.72 -7.89 4.17 -53.69 -0.22 -8.11 16 7 C 0.16 1.90 2.51 -67.80 -0.17 1.73 16 8 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 9 C -0.12 -1.68 5.76 -26.65 -0.15 -1.83 16 10 C 0.05 0.83 4.96 -3.84 -0.02 0.81 16 11 N -0.51 -7.74 4.39 -236.12 -1.04 -8.78 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 C 0.44 10.01 7.46 -10.98 -0.08 9.93 16 14 O -0.58 -14.93 13.92 5.54 0.08 -14.85 16 15 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 16 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 20 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.02 0.27 4.93 -3.84 -0.02 0.25 16 25 C 0.10 1.08 3.36 -26.65 -0.09 0.99 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 O -0.56 -5.32 13.14 -35.23 -0.46 -5.78 16 28 C -0.16 -1.50 9.16 -26.73 -0.24 -1.74 16 29 C -0.18 -1.40 9.83 -26.69 -0.26 -1.66 16 30 H 0.05 0.45 7.95 -51.93 -0.41 0.04 16 31 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 35 H 0.40 3.77 7.01 -40.82 -0.29 3.49 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 2.08 5.80 -51.93 -0.30 1.78 16 39 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 40 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 41 H 0.09 1.32 7.98 -51.93 -0.41 0.90 16 42 H 0.39 9.20 7.90 -40.82 -0.32 8.87 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 45 H 0.03 0.35 6.64 -51.93 -0.34 0.01 16 46 H 0.38 2.04 9.08 45.56 0.41 2.46 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 49 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 50 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -32.57 400.85 -8.74 -41.31 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -7.42 Total: 15.33 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.44 Total: 4.40 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.59 Total: -54.18 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.30 Total: -28.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.57 -8.74 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.041 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds