Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 115.55055 * 2 1 4 4 C 1.50693 * 109.46835 * 279.24158 * 3 2 1 5 5 O 1.21283 * 120.00085 * 5.48134 * 4 3 2 6 6 N 1.34783 * 119.99630 * 185.47505 * 4 3 2 7 7 C 1.46501 * 119.99533 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.52676 * 324.87889 * 7 6 4 9 9 C 1.53122 * 109.52075 * 85.00386 * 7 6 4 10 10 C 1.53032 * 109.27911 * 62.24708 * 9 7 6 11 11 N 1.46846 * 109.52348 * 59.17840 * 10 9 7 12 12 C 1.46905 * 111.00357 * 174.15711 * 11 10 9 13 13 C 1.50697 * 109.47159 * 293.95725 * 12 11 10 14 14 O 1.21296 * 119.99996 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00004 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99943 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00067 * 0.02562 * 16 15 13 18 18 C 1.38944 * 119.99688 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00303 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47118 * 90.00488 * 20 18 16 22 22 H 1.48502 * 109.47029 * 210.00374 * 20 18 16 23 23 H 1.48492 * 109.47125 * 330.00095 * 20 18 16 24 24 C 1.46845 * 111.19926 * 298.25990 * 11 10 9 25 25 C 1.53036 * 109.52660 * 61.74100 * 24 11 10 26 26 H 1.09001 * 109.50328 * 60.76117 * 25 24 11 27 27 O 1.42898 * 109.50497 * 180.88483 * 25 24 11 28 28 C 1.52999 * 117.49845 * 214.32114 * 2 1 3 29 29 C 1.52998 * 60.03343 * 252.48207 * 28 2 1 30 30 H 1.09000 * 109.47513 * 200.51771 * 1 2 3 31 31 H 1.09001 * 109.47135 * 320.51880 * 1 2 3 32 32 H 1.08997 * 109.46858 * 80.51610 * 1 2 3 33 33 H 1.09004 * 109.47075 * 39.24515 * 3 2 1 34 34 H 1.09001 * 109.46557 * 159.24228 * 3 2 1 35 35 H 0.96992 * 120.00002 * 0.02562 * 6 4 3 36 36 H 1.09007 * 109.50161 * 182.18852 * 9 7 6 37 37 H 1.08995 * 109.50351 * 302.30695 * 9 7 6 38 38 H 1.09000 * 109.46418 * 179.19223 * 10 9 7 39 39 H 1.09001 * 109.46652 * 299.16247 * 10 9 7 40 40 H 1.09002 * 109.46395 * 53.95298 * 12 11 10 41 41 H 1.08998 * 109.47468 * 173.95037 * 12 11 10 42 42 H 0.97001 * 119.99785 * 0.02562 * 15 13 12 43 43 H 0.97004 * 120.00370 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.46289 * 181.76225 * 24 11 10 45 45 H 1.08997 * 109.46057 * 301.72269 * 24 11 10 46 46 H 0.96699 * 113.99732 * 299.80191 * 27 25 24 47 47 H 1.08998 * 117.49539 * 359.97438 * 28 2 1 48 48 H 1.09007 * 117.49297 * 144.97733 * 28 2 1 49 49 H 1.08997 * 117.49867 * 107.50363 * 29 28 2 50 50 H 1.09005 * 117.49389 * 252.52387 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2007 1.9319 -1.4023 5 8 1.6400 1.3314 -2.2945 6 7 2.8333 3.0927 -1.6650 7 6 2.8433 3.6292 -3.0283 8 1 2.8919 2.8075 -3.7428 9 6 1.5673 4.4410 -3.2680 10 6 1.5340 5.6271 -2.3016 11 7 2.7183 6.4683 -2.5162 12 6 2.6509 7.6898 -1.7028 13 6 1.5092 8.5493 -2.1808 14 8 0.8197 8.1809 -3.1083 15 7 1.2541 9.7274 -1.5778 16 6 0.2158 10.5097 -2.0131 17 1 -0.3981 10.1817 -2.8388 18 6 -0.0468 11.7244 -1.3918 19 7 0.7005 12.1238 -0.3873 20 14 -1.4621 12.7899 -1.9844 21 1 -2.6978 12.4278 -1.2447 22 1 -1.1409 14.2194 -1.7417 23 1 -1.6726 12.5698 -3.4377 24 6 3.9547 5.7236 -2.2459 25 6 4.0603 4.5403 -3.2107 26 1 4.0889 4.9084 -4.2363 27 8 5.2533 3.8040 -2.9338 28 6 2.2365 -1.1208 -0.7652 29 6 2.2375 -1.1215 0.7648 30 1 -0.3634 -0.9625 0.3602 31 1 -0.3633 0.7932 0.6534 32 1 -0.3633 0.1693 -1.0136 33 1 1.6286 2.0515 0.6502 34 1 3.2136 1.2936 0.3642 35 1 3.2819 3.5728 -0.9516 36 1 1.5567 4.8075 -4.2946 37 1 0.6962 3.8083 -3.0978 38 1 0.6337 6.2153 -2.4794 39 1 1.5307 5.2595 -1.2754 40 1 2.4916 7.4222 -0.6582 41 1 3.5859 8.2418 -1.7979 42 1 1.8058 10.0222 -0.8364 43 1 0.5175 12.9720 0.0462 44 1 4.8125 6.3819 -2.3832 45 1 3.9401 5.3556 -1.2201 46 1 6.0653 4.3202 -3.0298 47 1 1.6112 -1.8584 -1.2682 48 1 3.1712 -0.8746 -1.2690 49 1 1.6130 -1.8595 1.2681 50 1 3.1729 -0.8754 1.2675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099927911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -119.349428 kcal Electronic energy + Delta-G solvation = -30382.827449 eV Core-core repulsion = 26216.575378 eV Total energy + Delta-G solvation = -4166.252071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56183 -40.45953 -39.59745 -38.27343 -37.10394 -35.93571 -35.44766 -33.31313 -32.76218 -30.80735 -30.38567 -29.16237 -28.40567 -26.44237 -24.23006 -23.92221 -23.29661 -22.38592 -21.02958 -20.24531 -19.92966 -19.85798 -18.25047 -18.17652 -17.76979 -16.98160 -16.69442 -16.66763 -16.49075 -16.26444 -15.82301 -15.69318 -15.44936 -15.34073 -15.00671 -14.86589 -14.45439 -14.13299 -13.90678 -13.83132 -13.58717 -13.47611 -13.35279 -13.26557 -12.94220 -12.88094 -12.58001 -12.46388 -12.41066 -12.34048 -12.17398 -12.12282 -12.05433 -11.46003 -11.42376 -11.23017 -11.06673 -10.87325 -10.41849 -10.27621 -10.02606 -9.95323 -9.21816 -8.45670 -5.93525 1.37707 1.41842 1.53921 1.74134 2.07793 2.15804 2.28180 2.63143 2.95297 3.17334 3.21579 3.38515 3.68866 3.71625 3.79015 3.86229 3.92992 4.06126 4.10033 4.15469 4.21435 4.26241 4.35556 4.39047 4.51830 4.56557 4.59232 4.64256 4.70354 4.76289 4.80679 4.81144 4.93948 4.96368 4.99080 5.05333 5.07550 5.16643 5.19064 5.28183 5.37782 5.42333 5.53554 5.86134 6.05645 6.16631 6.60028 6.62638 6.86811 7.15126 7.34140 7.59036 8.15278 8.71631 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015813 B = 0.002343 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.232944 B =11946.501448 C =12872.752662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 C -0.101 4.101 4 C 0.509 3.491 5 O -0.572 6.572 6 N -0.709 5.709 7 C 0.160 3.840 8 H 0.075 0.925 9 C -0.112 4.112 10 C 0.063 3.937 11 N -0.527 5.527 12 C 0.060 3.940 13 C 0.440 3.560 14 O -0.614 6.614 15 N -0.575 5.575 16 C -0.329 4.329 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.989 3.011 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.028 3.972 25 C 0.114 3.886 26 H 0.077 0.923 27 O -0.566 6.566 28 C -0.173 4.173 29 C -0.155 4.155 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.399 0.601 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -20.281 5.426 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.140 4.140 4 C 0.297 3.703 5 O -0.451 6.451 6 N -0.362 5.362 7 C 0.055 3.945 8 H 0.093 0.907 9 C -0.151 4.151 10 C -0.065 4.065 11 N -0.253 5.253 12 C -0.071 4.071 13 C 0.228 3.772 14 O -0.500 6.500 15 N -0.213 5.213 16 C -0.459 4.459 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.561 5.561 20 Si 0.813 3.187 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.100 4.100 25 C 0.054 3.946 26 H 0.095 0.905 27 O -0.374 6.374 28 C -0.210 4.210 29 C -0.191 4.191 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.250 0.750 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.123 0.877 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.614 -21.123 3.901 23.534 hybrid contribution -0.128 1.464 0.814 1.680 sum 9.486 -19.660 4.715 22.332 Atomic orbital electron populations 1.21291 0.92159 1.02282 1.01157 1.21144 0.94901 0.89913 1.06512 1.21296 1.04031 0.95929 0.92769 1.21178 0.77234 0.80052 0.91834 1.90676 1.45511 1.60042 1.48890 1.45918 1.55777 1.23764 1.10695 1.20796 0.93371 0.95384 0.84961 0.90685 1.21770 0.97432 0.95428 1.00489 1.22016 0.94038 0.93464 0.96977 1.61355 1.02389 1.05277 1.56288 1.21718 0.98107 0.91434 0.95810 1.20825 0.88126 0.83126 0.85167 1.90483 1.53511 1.73543 1.32454 1.41929 1.29600 1.17622 1.32110 1.19610 1.09124 1.00782 1.16382 0.90483 1.25974 1.00982 0.98228 0.96049 1.69660 1.40303 1.23224 1.22934 0.84983 0.77877 0.77412 0.78417 1.19775 1.19566 1.19929 1.22876 0.92890 0.95750 0.98517 1.21777 0.84541 0.89533 0.98726 0.90524 1.86511 1.16322 1.41582 1.92988 1.22824 1.01878 1.01348 0.94925 1.23294 1.02513 0.99770 0.93561 0.91572 0.91802 0.94013 0.86904 0.86821 0.75566 0.90880 0.91807 0.92027 0.94625 0.91278 0.86594 0.76994 0.91366 0.87942 0.93029 0.75009 0.89609 0.90129 0.87701 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 9.69 71.98 0.70 -1.37 16 2 C -0.12 -2.17 1.59 -52.15 -0.08 -2.26 16 3 C -0.10 -1.59 5.64 29.85 0.17 -1.42 16 4 C 0.51 11.72 7.65 87.65 0.67 12.39 16 5 O -0.57 -17.79 14.82 -3.04 -0.05 -17.83 16 6 N -0.71 -14.47 4.17 -442.15 -1.84 -16.31 16 7 C 0.16 3.80 2.51 45.07 0.11 3.91 16 8 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 9 C -0.11 -3.19 5.76 30.65 0.18 -3.01 16 10 C 0.06 1.95 4.96 86.32 0.43 2.38 16 11 N -0.53 -15.15 4.39 -900.94 -3.96 -19.11 16 12 C 0.06 1.89 5.45 85.56 0.47 2.35 16 13 C 0.44 20.06 7.46 87.66 0.65 20.71 16 14 O -0.61 -32.92 13.92 -3.08 -0.04 -32.96 16 15 N -0.57 -28.59 5.29 -306.98 -1.62 -30.21 16 16 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 17 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 19 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 20 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C 0.03 0.52 4.93 86.33 0.43 0.95 16 25 C 0.11 2.18 3.36 30.65 0.10 2.29 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 O -0.57 -8.89 13.14 -148.98 -1.96 -10.85 16 28 C -0.17 -3.21 9.16 30.59 0.28 -2.93 16 29 C -0.15 -2.03 9.83 30.62 0.30 -1.73 16 30 H 0.07 1.03 7.95 -2.39 -0.02 1.01 16 31 H 0.06 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.04 0.98 7.87 -2.39 -0.02 0.96 16 33 H 0.11 1.46 8.06 -2.38 -0.02 1.44 16 34 H 0.11 1.27 7.94 -2.39 -0.02 1.25 16 35 H 0.41 6.52 7.01 -92.71 -0.65 5.87 16 36 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.50 5.80 -2.39 -0.01 2.49 16 39 H 0.04 0.99 7.69 -2.39 -0.02 0.98 16 40 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 41 H 0.12 3.05 7.98 -2.39 -0.02 3.03 16 42 H 0.40 18.59 7.90 -92.71 -0.73 17.85 16 43 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.10 1.53 8.01 -2.39 -0.02 1.51 16 45 H 0.05 0.84 6.64 -2.39 -0.02 0.82 16 46 H 0.40 2.74 9.08 -74.06 -0.67 2.07 16 47 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 49 H 0.10 1.17 8.08 -2.39 -0.02 1.15 16 50 H 0.11 1.09 8.08 -2.38 -0.02 1.07 16 Total: -1.00 -73.38 400.85 -2.56 -75.94 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -1.08 Total: 40.72 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.68 Total: 14.48 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -7.14 Total: -114.16 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: -2.05 Total: -61.65 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.38 -2.56 -75.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099927911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.413 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds