Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 112.85187 * 2 1 4 4 O 1.21283 * 119.99989 * 228.80588 * 3 2 1 5 5 N 1.34785 * 120.00274 * 48.79795 * 3 2 1 6 6 C 1.46491 * 120.00222 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.57716 * 35.15828 * 6 5 3 8 8 C 1.53124 * 109.52291 * 275.00012 * 6 5 3 9 9 C 1.53032 * 109.27817 * 182.44247 * 8 6 5 10 10 N 1.46847 * 109.52682 * 59.17958 * 9 8 6 11 11 C 1.46899 * 111.00044 * 174.15899 * 10 9 8 12 12 C 1.50703 * 109.47107 * 66.04660 * 11 10 9 13 13 O 1.21286 * 120.00016 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00108 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00333 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99712 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00268 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99577 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47217 * 90.00373 * 19 17 15 21 21 H 1.48500 * 109.47037 * 209.99672 * 19 17 15 22 22 H 1.48498 * 109.47434 * 330.00169 * 19 17 15 23 23 C 1.46842 * 111.19604 * 298.25798 * 10 9 8 24 24 C 1.53035 * 109.52655 * 61.73774 * 23 10 9 25 25 H 1.09000 * 109.50467 * 180.88050 * 24 23 10 26 26 O 1.42904 * 109.49919 * 60.76021 * 24 23 10 27 27 C 1.53788 * 113.68833 * 131.26476 * 2 1 3 28 28 C 1.53779 * 87.08008 * 89.13159 * 27 2 1 29 29 C 1.53777 * 113.61691 * 228.79798 * 2 1 3 30 30 H 1.09000 * 109.46701 * 69.67177 * 1 2 3 31 31 H 1.09002 * 109.47221 * 189.67118 * 1 2 3 32 32 H 1.08994 * 109.47396 * 309.66758 * 1 2 3 33 33 H 0.96998 * 119.99498 * 0.02562 * 5 3 2 34 34 H 1.08997 * 109.49990 * 62.49947 * 8 6 5 35 35 H 1.08997 * 109.53124 * 302.40245 * 8 6 5 36 36 H 1.09003 * 109.46697 * 299.15746 * 9 8 6 37 37 H 1.09005 * 109.45482 * 179.19115 * 9 8 6 38 38 H 1.09002 * 109.47043 * 186.04640 * 11 10 9 39 39 H 1.09001 * 109.47354 * 306.04701 * 11 10 9 40 40 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 41 41 H 0.96996 * 119.99832 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.46292 * 181.75922 * 23 10 9 43 43 H 1.09008 * 109.46217 * 301.72586 * 23 10 9 44 44 H 0.96701 * 113.99363 * 60.20219 * 26 24 23 45 45 H 1.09007 * 113.61181 * 203.67835 * 27 2 1 46 46 H 1.08998 * 113.61444 * 334.57446 * 27 2 1 47 47 H 1.09006 * 113.60835 * 270.88347 * 28 27 2 48 48 H 1.09000 * 113.69087 * 139.99479 * 28 27 2 49 49 H 1.09004 * 113.61196 * 25.35271 * 29 2 1 50 50 H 1.09005 * 113.61672 * 156.25411 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6788 -0.7904 5 7 1.6684 2.3084 0.8782 6 6 2.2369 3.6584 0.8778 7 1 2.4780 3.9529 -0.1436 8 6 3.5091 3.6782 1.7298 9 6 4.0645 5.1035 1.7755 10 7 3.0564 6.0049 2.3480 11 6 3.6036 7.3553 2.5355 12 6 3.9079 7.9651 1.1913 13 8 3.6908 7.3365 0.1771 14 7 4.4222 9.2086 1.1163 15 6 4.6985 9.7635 -0.1064 16 1 4.5045 9.2041 -1.0096 17 6 5.2283 11.0457 -0.1837 18 7 5.4649 11.7263 0.9153 19 14 5.6055 11.8016 -1.8498 20 1 4.4113 12.5335 -2.3431 21 1 6.7449 12.7449 -1.7189 22 1 5.9600 10.7274 -2.8119 23 6 1.8435 6.0387 1.5210 24 6 1.2218 4.6414 1.4676 25 1 0.3302 4.6634 0.8409 26 8 0.8675 4.2261 2.7883 27 6 2.1478 -0.9288 1.0586 28 6 2.0950 -2.0420 -0.0011 29 6 2.1460 -0.9281 -1.0601 30 1 -0.3633 0.3570 -0.9637 31 1 -0.3634 -1.0131 0.1726 32 1 -0.3634 0.6559 0.7910 33 1 0.9704 2.0762 1.5105 34 1 4.2516 3.0122 1.2905 35 1 3.2754 3.3461 2.7413 36 1 4.3115 5.4296 0.7652 37 1 4.9623 5.1236 2.3933 38 1 2.8738 7.9736 3.0582 39 1 4.5192 7.2978 3.1240 40 1 4.5962 9.7112 1.9276 41 1 5.8351 12.6212 0.8613 42 1 1.1283 6.7382 1.9537 43 1 2.1009 6.3604 0.5118 44 1 0.2262 4.8044 3.2235 45 1 3.1609 -0.6486 1.3474 46 1 1.4973 -1.1092 1.9143 47 1 1.1594 -2.6013 -0.0005 48 1 2.9738 -2.6869 -0.0030 49 1 1.4939 -1.1080 -1.9149 50 1 3.1586 -0.6478 -1.3505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099944830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -125.108001 kcal Electronic energy + Delta-G solvation = -30775.509420 eV Core-core repulsion = 26609.007639 eV Total energy + Delta-G solvation = -4166.501781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81286 -41.04869 -39.62998 -38.48215 -36.81534 -35.87947 -35.59546 -33.39279 -32.69264 -30.92185 -30.38673 -28.54827 -26.70804 -26.50370 -25.62575 -24.25517 -23.76714 -21.81848 -21.32359 -21.00929 -19.94549 -19.51774 -18.29537 -18.01937 -17.57306 -17.52080 -16.72733 -16.55943 -16.34407 -16.01161 -15.86789 -15.73296 -15.67788 -15.46029 -15.07125 -14.63961 -14.38300 -14.02592 -13.87087 -13.73835 -13.67991 -13.45894 -13.22820 -13.16587 -13.05114 -12.64995 -12.52449 -12.47840 -12.39586 -12.22835 -12.17393 -12.15312 -12.07219 -11.61110 -11.44144 -11.42414 -11.20721 -10.97623 -10.84020 -10.53803 -10.08013 -10.02149 -9.01729 -8.49433 -5.99359 1.32494 1.37382 1.49524 1.59469 1.98332 2.13410 2.25768 2.89287 3.16126 3.23901 3.33480 3.45448 3.55599 3.68660 3.78380 3.82035 3.88213 4.02416 4.05921 4.16019 4.37290 4.40135 4.47300 4.52450 4.58877 4.64895 4.68124 4.70349 4.75444 4.84543 4.87133 4.89064 4.93344 4.93906 5.04767 5.08275 5.11132 5.18563 5.28251 5.31374 5.38099 5.46483 5.54130 5.85803 6.01846 6.03848 6.55524 6.58668 6.96806 7.08567 7.27115 7.51904 8.07279 8.65612 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020054 B = 0.002367 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.886800 B =11828.071881 C =12545.764871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.517 3.483 4 O -0.592 6.592 5 N -0.701 5.701 6 C 0.156 3.844 7 H 0.057 0.943 8 C -0.101 4.101 9 C 0.048 3.952 10 N -0.485 5.485 11 C 0.049 3.951 12 C 0.405 3.595 13 O -0.623 6.623 14 N -0.569 5.569 15 C -0.333 4.333 16 H 0.075 0.925 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.989 3.011 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.277 1.277 23 C 0.003 3.997 24 C 0.126 3.874 25 H 0.076 0.924 26 O -0.553 6.553 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.127 4.127 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.417 0.583 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.396 0.604 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.221 -22.455 7.055 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.113 4.113 3 C 0.305 3.695 4 O -0.472 6.472 5 N -0.352 5.352 6 C 0.050 3.950 7 H 0.076 0.924 8 C -0.140 4.140 9 C -0.081 4.081 10 N -0.207 5.207 11 C -0.083 4.083 12 C 0.193 3.807 13 O -0.511 6.511 14 N -0.205 5.205 15 C -0.463 4.463 16 H 0.093 0.907 17 C -0.211 4.211 18 N -0.557 5.557 19 Si 0.813 3.187 20 H -0.195 1.195 21 H -0.194 1.194 22 H -0.202 1.202 23 C -0.126 4.126 24 C 0.066 3.934 25 H 0.094 0.906 26 O -0.361 6.361 27 C -0.155 4.155 28 C -0.163 4.163 29 C -0.165 4.165 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.255 0.745 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.246 0.754 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.401 -23.126 6.219 26.968 hybrid contribution 0.514 2.080 -1.203 2.457 sum -11.888 -21.045 5.016 24.686 Atomic orbital electron populations 1.21624 0.89012 1.04600 1.02791 1.22309 0.98651 0.88881 1.01432 1.21260 0.81528 0.87653 0.79072 1.90691 1.33695 1.81275 1.41573 1.45874 1.41409 1.10690 1.37266 1.20821 0.93566 0.82335 0.98232 0.92434 1.21657 0.96065 0.95284 1.00979 1.22107 0.94972 0.92582 0.98448 1.62529 1.05005 1.06165 1.47026 1.22186 1.02920 0.90543 0.92636 1.22241 0.82643 0.82595 0.93260 1.90418 1.59066 1.62354 1.39286 1.42130 1.55477 1.14248 1.08667 1.19609 1.41138 0.98991 0.86583 0.90684 1.26005 0.96403 0.96358 1.02368 1.69660 1.44278 1.13007 1.28767 0.84986 0.78364 0.77893 0.77451 1.19480 1.19419 1.20219 1.23092 0.92886 0.97898 0.98752 1.21738 0.95455 0.90835 0.85403 0.90596 1.86382 1.66779 1.55084 1.27862 1.22911 1.00852 0.94739 0.96979 1.22821 1.03775 0.95556 0.94145 1.22904 1.00867 0.95593 0.97091 0.92345 0.88807 0.90807 0.74498 0.93332 0.89445 0.95693 0.90636 0.86514 0.87438 0.76935 0.91229 0.89169 0.93021 0.75385 0.91472 0.88183 0.87418 0.90726 0.90358 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.98 71.98 0.65 -0.74 16 2 C -0.11 -1.93 1.26 -52.40 -0.07 -1.99 16 3 C 0.52 13.84 6.89 87.65 0.60 14.45 16 4 O -0.59 -22.20 15.57 -3.04 -0.05 -22.24 16 5 N -0.70 -16.40 4.94 -442.16 -2.18 -18.58 16 6 C 0.16 4.55 2.30 45.07 0.10 4.65 16 7 H 0.06 2.16 7.59 -2.39 -0.02 2.14 16 8 C -0.10 -3.09 5.51 30.65 0.17 -2.92 16 9 C 0.05 1.66 5.09 86.32 0.44 2.10 16 10 N -0.49 -15.28 4.74 -900.93 -4.27 -19.55 16 11 C 0.05 1.64 5.86 85.56 0.50 2.14 16 12 C 0.41 18.68 7.20 87.66 0.63 19.31 16 13 O -0.62 -33.02 11.20 -3.05 -0.03 -33.05 16 14 N -0.57 -28.82 5.29 -306.99 -1.62 -30.44 16 15 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 16 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 18 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 19 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C 0.00 0.08 4.63 86.33 0.40 0.48 16 24 C 0.13 3.03 3.42 30.64 0.10 3.13 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 O -0.55 -10.33 12.06 -148.98 -1.80 -12.12 16 27 C -0.12 -1.63 7.20 31.12 0.22 -1.41 16 28 C -0.13 -1.49 7.73 31.12 0.24 -1.25 16 29 C -0.13 -2.32 6.99 31.12 0.22 -2.10 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.62 7.34 -2.39 -0.02 0.60 16 32 H 0.07 0.67 7.04 -2.39 -0.02 0.66 16 33 H 0.42 7.31 7.02 -92.71 -0.65 6.66 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 2.47 7.80 -2.39 -0.02 2.45 16 36 H 0.02 1.10 6.00 -2.39 -0.01 1.08 16 37 H 0.08 2.46 8.06 -2.38 -0.02 2.44 16 38 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.11 3.26 8.06 -2.39 -0.02 3.24 16 40 H 0.40 19.10 7.90 -92.70 -0.73 18.37 16 41 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.09 2.37 8.12 -2.39 -0.02 2.35 16 43 H 0.05 2.09 5.36 -2.38 -0.01 2.08 16 44 H 0.40 4.39 9.08 -74.06 -0.67 3.71 16 45 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 46 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 47 H 0.11 0.78 7.64 -2.38 -0.02 0.76 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 1.27 8.10 -2.38 -0.02 1.26 16 50 H 0.06 1.57 7.43 -2.38 -0.02 1.55 16 Total: -1.00 -74.36 390.90 -3.22 -77.58 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -1.07 Total: 44.44 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 5.50 Total: 17.61 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -7.79 Total: -117.64 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -1.88 Total: -67.42 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -74.36 -3.22 -77.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099944830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.524 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds