Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48504 * 109.46862 * 270.00095 * 3 2 1 5 5 H 1.48500 * 109.46905 * 29.99665 * 3 2 1 6 6 H 1.48499 * 109.47390 * 149.99739 * 3 2 1 7 7 C 1.38952 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 C 1.53785 * 113.61347 * 254.13526 * 14 13 12 16 16 C 1.53949 * 87.01999 * 220.04921 * 15 14 13 17 17 C 1.53001 * 113.61474 * 270.80113 * 16 15 14 18 18 N 1.46490 * 109.47232 * 272.53273 * 17 16 15 19 19 C 1.34781 * 120.00240 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.50705 * 120.00082 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.46653 * 179.97438 * 21 19 18 23 23 H 1.08992 * 110.44063 * 303.90555 * 22 21 19 24 24 C 1.54810 * 110.48425 * 181.21821 * 22 21 19 25 25 C 1.54997 * 102.09350 * 220.44915 * 24 22 21 26 26 O 1.44376 * 103.49340 * 37.02172 * 25 24 22 27 27 C 1.43747 * 106.97539 * 319.94257 * 26 25 24 28 28 C 1.53780 * 113.61092 * 156.53119 * 14 13 12 29 29 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 31 31 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 32 32 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 33 33 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 34 34 H 1.08994 * 112.85005 * 25.33222 * 14 13 12 35 35 H 1.09000 * 113.61582 * 334.56945 * 15 14 13 36 36 H 1.09007 * 113.61203 * 105.47042 * 15 14 13 37 37 H 1.09003 * 113.66601 * 139.93101 * 16 15 14 38 38 H 1.09006 * 109.46973 * 32.53472 * 17 16 15 39 39 H 1.09003 * 109.47046 * 152.52996 * 17 16 15 40 40 H 0.96996 * 120.00242 * 359.97438 * 18 17 16 41 41 H 1.08995 * 109.46833 * 299.99833 * 21 19 18 42 42 H 1.08997 * 109.46717 * 59.99827 * 21 19 18 43 43 H 1.08998 * 110.90679 * 338.64340 * 24 22 21 44 44 H 1.09002 * 110.90777 * 102.24859 * 24 22 21 45 45 H 1.09008 * 110.61668 * 278.52303 * 25 24 22 46 46 H 1.09002 * 110.61826 * 155.52914 * 25 24 22 47 47 H 1.08994 * 109.87662 * 267.08558 * 27 26 25 48 48 H 1.08999 * 110.00531 * 146.00285 * 27 26 25 49 49 H 1.09004 * 113.61334 * 254.52449 * 28 14 13 50 50 H 1.08999 * 113.61516 * 25.43259 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5578 0.0022 12 6 1.2439 -4.8630 0.0032 13 7 2.1986 -5.9795 0.0037 14 6 1.4983 -7.2708 0.0049 15 6 1.5438 -7.9950 1.3608 16 6 1.7503 -9.2979 0.5673 17 6 0.4437 -9.9940 0.1810 18 7 0.0263 -10.8857 1.2657 19 6 -1.1052 -11.6084 1.1463 20 8 -1.7780 -11.5199 0.1411 21 6 -1.5349 -12.5254 2.2624 22 6 -2.8414 -13.2214 1.8760 23 1 -3.6072 -12.4852 1.6320 24 6 -3.3209 -14.1474 3.0202 25 6 -3.8279 -15.3887 2.2426 26 8 -2.8905 -15.5084 1.1511 27 6 -2.6130 -14.1762 0.6880 28 6 2.3407 -8.4288 -0.5557 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6176 -4.9213 -0.8868 32 1 0.6170 -4.9201 0.8931 33 1 2.8335 -5.9127 -0.7776 34 1 0.4984 -7.2105 -0.4245 35 1 2.4001 -7.7177 1.9755 36 1 0.6007 -7.9597 1.9065 37 1 2.4733 -9.9762 1.0204 38 1 -0.3295 -9.2453 0.0083 39 1 0.5966 -10.5749 -0.7285 40 1 0.5645 -10.9568 2.0695 41 1 -0.7616 -13.2737 2.4358 42 1 -1.6884 -11.9440 3.1715 43 1 -2.4938 -14.4122 3.6788 44 1 -4.1310 -13.6832 3.5827 45 1 -4.8366 -15.2197 1.8654 46 1 -3.7970 -16.2764 2.8743 47 1 -3.2877 -13.9197 -0.1286 48 1 -1.5791 -14.1066 0.3502 49 1 2.0402 -8.7435 -1.5551 50 1 3.4154 -8.2704 -0.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100214542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -107.894673 kcal Electronic energy + Delta-G solvation = -28279.176283 eV Core-core repulsion = 24113.420928 eV Total energy + Delta-G solvation = -4165.755355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63726 -39.75619 -38.95769 -38.05288 -35.11221 -34.05089 -33.92724 -33.19624 -31.20337 -30.45321 -28.62902 -27.08674 -26.03158 -25.66310 -24.08201 -23.16370 -22.39542 -21.39920 -20.44713 -19.38981 -18.87089 -17.87281 -17.37984 -17.09170 -16.77614 -16.35029 -16.03613 -15.71923 -15.35846 -15.26111 -15.12295 -14.76168 -14.38297 -14.17941 -13.99008 -13.79218 -13.42202 -13.31300 -13.14581 -12.82661 -12.69382 -12.42847 -12.21958 -12.10723 -11.76222 -11.64590 -11.57523 -11.52992 -11.38636 -11.17644 -11.05979 -10.99748 -10.60242 -10.39785 -10.36792 -10.21620 -10.15550 -9.99932 -9.50989 -9.38926 -8.44161 -8.07003 -7.95787 -6.41643 -3.82527 2.29422 2.78308 3.17756 3.26358 3.32409 3.55757 3.91218 3.96690 4.11241 4.16674 4.30133 4.35149 4.40292 4.45004 4.52075 4.60388 4.71466 4.73763 4.80801 4.90073 5.05363 5.08625 5.19128 5.20952 5.25218 5.26204 5.32874 5.35835 5.41529 5.45317 5.53824 5.59242 5.69072 5.72173 5.74895 5.82223 5.92858 5.94100 6.03909 6.18160 6.20912 6.33232 6.48734 7.12874 7.28597 7.55140 7.67373 7.86884 8.06471 8.61443 9.17896 9.54549 10.06013 10.76094 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024294 B = 0.001451 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.258061 B =19287.309347 C =20004.194666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.057 3.943 15 C -0.121 4.121 16 C -0.127 4.127 17 C 0.136 3.864 18 N -0.728 5.728 19 C 0.509 3.491 20 O -0.539 6.539 21 C -0.133 4.133 22 C -0.107 4.107 23 H 0.092 0.908 24 C -0.153 4.153 25 C 0.045 3.955 26 O -0.383 6.383 27 C 0.059 3.941 28 C -0.130 4.130 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.350 0.650 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -29.178 6.061 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.053 4.053 15 C -0.159 4.159 16 C -0.147 4.147 17 C 0.013 3.987 18 N -0.380 5.380 19 C 0.295 3.705 20 O -0.415 6.415 21 C -0.173 4.173 22 C -0.126 4.126 23 H 0.111 0.889 24 C -0.190 4.190 25 C -0.031 4.031 26 O -0.303 6.303 27 C -0.017 4.017 28 C -0.169 4.169 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.944 -29.094 5.903 30.277 hybrid contribution -0.413 1.195 -0.398 1.326 sum -6.357 -27.899 5.505 29.139 Atomic orbital electron populations 1.69614 1.05945 1.28150 1.50610 1.25264 0.95630 0.99722 0.97319 0.85855 0.79245 0.80796 0.78370 1.20425 1.20925 1.19401 1.19710 0.93380 0.82264 1.47603 0.87922 1.41871 1.09199 1.04625 1.64359 1.19840 0.88388 0.84752 0.84422 1.90518 1.13770 1.87095 1.55453 1.21729 0.94449 0.91072 1.01060 1.60240 1.18351 0.99514 1.50775 1.23088 0.96605 0.88584 0.97036 1.23163 1.02534 0.93429 0.96770 1.22467 0.96333 0.96533 0.99337 1.21202 0.95339 0.92504 0.89675 1.46024 1.25709 1.44753 1.21488 1.20693 0.80516 0.80600 0.88674 1.90730 1.53517 1.65980 1.31320 1.21768 0.98646 0.98904 0.98026 1.22313 0.97063 0.97965 0.95240 0.88921 1.23237 1.01895 0.96043 0.97859 1.23541 0.93135 0.98337 0.88101 1.88877 1.63453 1.26971 1.50957 1.23176 1.01809 0.80900 0.95857 1.23177 1.00893 0.95223 0.97579 0.91880 0.77469 0.93908 0.89731 0.82947 0.91234 0.88801 0.91800 0.89698 0.91087 0.91258 0.76411 0.88444 0.88330 0.90163 0.89888 0.92124 0.88970 0.91808 0.90035 0.91275 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 11 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 12 C 0.05 0.88 6.02 -4.97 -0.03 0.85 16 13 N -0.66 -10.37 6.18 -107.12 -0.66 -11.03 16 14 C 0.06 0.67 3.77 -66.90 -0.25 0.42 16 15 C -0.12 -1.21 7.43 -25.83 -0.19 -1.40 16 16 C -0.13 -1.00 3.94 -89.72 -0.35 -1.35 16 17 C 0.14 1.14 5.35 -4.05 -0.02 1.11 16 18 N -0.73 -5.05 5.56 -60.29 -0.33 -5.38 16 19 C 0.51 4.29 7.34 -10.98 -0.08 4.21 16 20 O -0.54 -6.67 15.08 5.56 0.08 -6.58 16 21 C -0.13 -0.71 4.94 -27.88 -0.14 -0.84 16 22 C -0.11 -0.70 2.67 -89.09 -0.24 -0.94 16 23 H 0.09 0.69 8.02 -51.93 -0.42 0.27 16 24 C -0.15 -0.72 6.71 -24.72 -0.17 -0.89 16 25 C 0.05 0.27 7.72 38.21 0.29 0.57 16 26 O -0.38 -3.59 11.52 -35.23 -0.41 -4.00 16 27 C 0.06 0.51 6.31 37.74 0.24 0.75 16 28 C -0.13 -1.22 7.26 -25.92 -0.19 -1.41 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 31 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.35 5.72 8.26 -39.29 -0.32 5.39 16 34 H 0.07 0.81 7.46 -51.93 -0.39 0.43 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.71 7.40 -51.93 -0.38 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 1.77 8.47 -40.82 -0.35 1.42 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.31 7.87 -51.93 -0.41 -0.09 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.73 7.25 -51.93 -0.38 0.36 16 49 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -34.11 407.76 -9.29 -43.39 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.39 Total: 12.20 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.45 Total: 3.39 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.33 Total: -54.80 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.23 Total: -26.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.11 -9.29 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100214542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.500 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds