Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 120.00049 * 2 1 4 4 H 1.48493 * 109.47089 * 239.99932 * 3 2 1 5 5 H 1.48501 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46923 * 119.99557 * 3 2 1 7 7 C 1.38953 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00142 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99974 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00060 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47361 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00375 * 179.97438 * 13 12 10 15 15 C 1.53779 * 113.61896 * 205.00041 * 14 13 12 16 16 C 1.53781 * 87.08323 * 220.02400 * 15 14 13 17 17 C 1.53000 * 113.61607 * 139.97862 * 16 15 14 18 18 N 1.46500 * 109.47125 * 174.99698 * 17 16 15 19 19 C 1.34779 * 119.99891 * 179.97438 * 18 17 16 20 20 O 1.21276 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99695 * 179.97438 * 19 18 17 22 22 C 1.53004 * 109.46720 * 180.02562 * 21 19 18 23 23 H 1.09002 * 110.45859 * 54.30315 * 22 21 19 24 24 C 1.54508 * 110.51118 * 176.90664 * 22 21 19 25 25 C 1.54483 * 104.06393 * 118.77944 * 24 22 21 26 26 O 1.44424 * 104.80039 * 23.98041 * 25 24 22 27 27 C 1.44427 * 105.27650 * 319.48511 * 26 25 24 28 28 C 1.53775 * 87.08178 * 25.43129 * 16 15 14 29 29 H 0.97001 * 119.99767 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00063 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47185 * 60.00006 * 12 10 9 32 32 H 1.08999 * 109.47372 * 299.99803 * 12 10 9 33 33 H 1.00908 * 110.99594 * 56.04572 * 13 12 10 34 34 H 1.08992 * 112.90778 * 336.25830 * 14 13 12 35 35 H 1.08996 * 113.61452 * 105.47185 * 15 14 13 36 36 H 1.09000 * 113.68758 * 334.58183 * 15 14 13 37 37 H 1.08999 * 113.61436 * 270.79825 * 16 15 14 38 38 H 1.09006 * 109.46918 * 55.00032 * 17 16 15 39 39 H 1.09003 * 109.47320 * 295.00205 * 17 16 15 40 40 H 0.97000 * 120.00334 * 0.02562 * 18 17 16 41 41 H 1.08996 * 109.46946 * 60.00572 * 21 19 18 42 42 H 1.08996 * 109.47478 * 299.99796 * 21 19 18 43 43 H 1.08999 * 110.51389 * 237.42673 * 24 22 21 44 44 H 1.09004 * 110.51267 * 0.14056 * 24 22 21 45 45 H 1.08995 * 110.36874 * 142.81279 * 25 24 22 46 46 H 1.08998 * 110.37268 * 265.03810 * 25 24 22 47 47 H 1.08999 * 110.37600 * 281.68204 * 27 26 25 48 48 H 1.09000 * 110.37247 * 159.34210 * 27 26 25 49 49 H 1.09003 * 113.61612 * 89.11523 * 28 16 15 50 50 H 1.08996 * 113.61720 * 220.01762 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5580 0.0010 12 6 1.2438 -4.8630 0.0011 13 7 2.1983 -5.9796 0.0004 14 6 1.4980 -7.2709 0.0015 15 6 2.3275 -8.4210 0.5964 16 6 1.7619 -9.3055 -0.5273 17 6 2.7904 -10.2661 -1.1277 18 7 2.1313 -11.1422 -2.0994 19 6 2.8461 -12.0754 -2.7588 20 8 4.0348 -12.1901 -2.5474 21 6 2.1679 -12.9770 -3.7579 22 6 3.1965 -13.9375 -4.3584 23 1 3.7190 -14.4782 -3.5692 24 6 2.5123 -14.9252 -5.3298 25 6 3.1852 -14.6399 -6.6908 26 8 4.4648 -14.0603 -6.3555 27 6 4.2017 -13.1722 -5.2474 28 6 1.5754 -8.0148 -1.3422 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.6168 -4.9209 -0.8886 32 1 0.6175 -4.9206 0.8914 33 1 2.8338 -5.9125 0.7813 34 1 0.4884 -7.2056 0.4069 35 1 2.0049 -8.7219 1.5931 36 1 3.4042 -8.2649 0.5291 37 1 0.8251 -9.7976 -0.2660 38 1 3.2303 -10.8699 -0.3338 39 1 3.5736 -9.6948 -1.6261 40 1 1.1806 -11.0503 -2.2688 41 1 1.7273 -12.3735 -4.5515 42 1 1.3854 -13.5487 -3.2591 43 1 2.6966 -15.9542 -5.0209 44 1 1.4417 -14.7277 -5.3842 45 1 3.3225 -15.5666 -7.2479 46 1 2.5875 -13.9354 -7.2693 47 1 3.7610 -12.2411 -5.6036 48 1 5.1200 -12.9716 -4.6956 49 1 2.4463 -7.7463 -1.9403 50 1 0.6458 -7.9877 -1.9105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100214543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -108.627830 kcal Electronic energy + Delta-G solvation = -28146.234553 eV Core-core repulsion = 23980.447406 eV Total energy + Delta-G solvation = -4165.787147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.56726 -39.66352 -38.95389 -38.04759 -35.16295 -34.05884 -33.94077 -33.20506 -31.20835 -30.36019 -28.77707 -27.08907 -26.10063 -25.68499 -24.02631 -23.30995 -21.70148 -21.27390 -20.47183 -19.70796 -19.09147 -17.87998 -17.67211 -16.72375 -16.54791 -16.17735 -16.06803 -15.89286 -15.45044 -15.23956 -15.17499 -14.54010 -14.45474 -14.23305 -14.04808 -13.75221 -13.58301 -13.39326 -13.13394 -12.72152 -12.50064 -12.39180 -12.29099 -12.07079 -11.68858 -11.63429 -11.54597 -11.51537 -11.32494 -11.07190 -11.04274 -10.97326 -10.76034 -10.44521 -10.38723 -10.21275 -10.15219 -10.06838 -9.50333 -9.35158 -8.44905 -8.07781 -7.96195 -6.42062 -3.82896 2.31766 2.81433 3.20110 3.25649 3.30277 3.61079 3.90734 4.03252 4.09479 4.24837 4.28446 4.36347 4.39155 4.46495 4.57559 4.62287 4.71509 4.72827 4.87049 4.90313 5.00924 5.03674 5.16087 5.19572 5.22842 5.26583 5.27585 5.34795 5.47513 5.48049 5.58733 5.62605 5.65754 5.74948 5.78301 5.79977 5.90313 5.93590 6.05985 6.17069 6.22591 6.36403 6.42712 7.15292 7.28160 7.54726 7.66099 7.89780 8.05969 8.61043 9.17547 9.53970 10.05607 10.75589 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.001429 C = 0.001386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.712623 B =19588.028989 C =20194.769824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.059 3.941 15 C -0.132 4.132 16 C -0.125 4.125 17 C 0.131 3.869 18 N -0.728 5.728 19 C 0.508 3.492 20 O -0.538 6.538 21 C -0.134 4.134 22 C -0.106 4.106 23 H 0.092 0.908 24 C -0.153 4.153 25 C 0.042 3.958 26 O -0.377 6.377 27 C 0.054 3.946 28 C -0.121 4.121 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.351 0.649 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 -29.671 -6.464 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.288 5.288 14 C -0.051 4.051 15 C -0.170 4.170 16 C -0.145 4.145 17 C 0.007 3.993 18 N -0.380 5.380 19 C 0.294 3.706 20 O -0.415 6.415 21 C -0.174 4.174 22 C -0.125 4.125 23 H 0.111 0.889 24 C -0.191 4.191 25 C -0.035 4.035 26 O -0.296 6.296 27 C -0.023 4.023 28 C -0.159 4.159 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.171 0.829 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.111 0.889 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.212 -29.581 -7.075 30.495 hybrid contribution -1.475 1.026 0.989 2.051 sum -3.687 -28.555 -6.086 29.428 Atomic orbital electron populations 1.69607 1.05934 1.28244 1.50588 1.25258 0.95632 0.99708 0.97289 0.85913 0.78759 0.80433 0.79090 1.19882 1.20977 1.19914 1.19666 0.93367 0.82276 1.47697 0.87974 1.41863 1.09174 1.04611 1.64395 1.19837 0.88404 0.84756 0.84465 1.90523 1.13777 1.87074 1.55383 1.21728 0.94436 0.91084 1.01015 1.60238 1.18276 0.99466 1.50868 1.22977 0.96601 0.88538 0.97021 1.23194 1.01254 0.95218 0.97356 1.22648 0.98808 0.94712 0.98301 1.21398 0.95187 0.91451 0.91226 1.46051 1.12765 1.36139 1.43064 1.20670 0.87489 0.80809 0.81590 1.90722 1.15275 1.70081 1.65374 1.21783 0.99327 0.97752 0.98541 1.22296 0.95771 0.95828 0.98625 0.88940 1.23041 1.00572 1.00239 0.95215 1.23407 0.85230 0.98555 0.96275 1.89155 1.28539 1.60688 1.51232 1.23517 1.00215 0.92230 0.86331 1.23196 1.02642 0.93337 0.96722 0.91840 0.77484 0.89718 0.93926 0.82897 0.91124 0.91300 0.88797 0.88856 0.91501 0.90887 0.76564 0.88563 0.88436 0.90373 0.90234 0.89188 0.92296 0.92524 0.88058 0.88867 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 12 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 13 N -0.66 -10.27 6.18 -107.14 -0.66 -10.93 16 14 C 0.06 0.67 4.14 -66.90 -0.28 0.39 16 15 C -0.13 -1.21 7.21 -25.92 -0.19 -1.39 16 16 C -0.13 -0.95 3.75 -89.81 -0.34 -1.29 16 17 C 0.13 1.10 5.51 -4.04 -0.02 1.08 16 18 N -0.73 -5.00 5.56 -60.29 -0.33 -5.33 16 19 C 0.51 4.28 7.63 -10.98 -0.08 4.20 16 20 O -0.54 -6.74 14.92 5.56 0.08 -6.66 16 21 C -0.13 -0.68 4.92 -27.88 -0.14 -0.82 16 22 C -0.11 -0.71 2.71 -89.05 -0.24 -0.96 16 23 H 0.09 0.74 7.96 -51.93 -0.41 0.33 16 24 C -0.15 -0.75 6.74 -25.16 -0.17 -0.92 16 25 C 0.04 0.26 7.63 37.94 0.29 0.55 16 26 O -0.38 -3.79 11.65 -35.23 -0.41 -4.20 16 27 C 0.05 0.48 6.30 37.94 0.24 0.72 16 28 C -0.12 -1.19 7.43 -25.92 -0.19 -1.38 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 30 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.35 5.70 8.24 -39.29 -0.32 5.38 16 34 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 40 H 0.40 1.67 8.47 -40.82 -0.35 1.32 16 41 H 0.10 0.35 8.02 -51.93 -0.42 -0.06 16 42 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.24 7.73 -51.93 -0.40 -0.16 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 48 H 0.10 1.06 7.71 -51.93 -0.40 0.66 16 49 H 0.09 1.11 7.90 -51.93 -0.41 0.70 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 408.70 15.07 6.16 6.16 Total: -1.00 -34.26 408.70 -9.32 -43.59 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.41 Total: 11.99 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.48 Total: 3.28 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.33 Total: -54.39 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.24 Total: -26.68 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.26 -9.32 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100214543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.040 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds