Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00210 * 2 1 4 4 H 1.48494 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46826 * 300.00012 * 3 2 1 6 6 H 1.48500 * 109.46662 * 59.99776 * 3 2 1 7 7 C 1.38953 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00209 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99630 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00197 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99745 * 179.97438 * 10 9 7 13 13 N 1.46895 * 109.47054 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99939 * 179.97438 * 13 12 10 15 15 C 1.53780 * 113.61250 * 155.00130 * 14 13 12 16 16 C 1.53782 * 87.07872 * 89.20456 * 15 14 13 17 17 C 1.52997 * 113.61653 * 139.98291 * 16 15 14 18 18 N 1.46499 * 109.47555 * 174.99994 * 17 16 15 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 16 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 H 1.09002 * 109.47885 * 304.74624 * 21 19 18 23 23 C 1.53091 * 109.48064 * 64.77953 * 21 19 18 24 24 C 1.53178 * 109.15926 * 177.59333 * 23 21 19 25 25 C 1.53178 * 109.03650 * 303.01644 * 24 23 21 26 26 C 1.53089 * 109.16250 * 56.98172 * 25 24 23 27 27 O 1.42900 * 109.47779 * 184.72232 * 21 19 18 28 28 C 1.53774 * 113.69333 * 252.54057 * 14 13 12 29 29 H 0.96996 * 119.99517 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00152 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46845 * 59.99866 * 12 10 9 32 32 H 1.09000 * 109.46891 * 300.00242 * 12 10 9 33 33 H 1.00898 * 111.00216 * 303.95476 * 13 12 10 34 34 H 1.09003 * 112.84461 * 23.80894 * 14 13 12 35 35 H 1.08997 * 113.61710 * 334.65730 * 15 14 13 36 36 H 1.08997 * 113.69095 * 203.76044 * 15 14 13 37 37 H 1.09000 * 113.61230 * 270.79826 * 16 15 14 38 38 H 1.08998 * 109.47382 * 54.99555 * 17 16 15 39 39 H 1.09002 * 109.47216 * 294.99992 * 17 16 15 40 40 H 0.97000 * 119.99484 * 359.97438 * 18 17 16 41 41 H 1.09002 * 109.52202 * 297.49821 * 23 21 19 42 42 H 1.08997 * 109.52439 * 57.68551 * 23 21 19 43 43 H 1.09006 * 109.53804 * 183.14951 * 24 23 21 44 44 H 1.08998 * 109.61722 * 62.93002 * 24 23 21 45 45 H 1.08999 * 109.51969 * 297.07983 * 25 24 23 46 46 H 1.09003 * 109.51953 * 176.89135 * 25 24 23 47 47 H 1.08996 * 109.48047 * 182.40791 * 26 25 24 48 48 H 1.09007 * 109.48824 * 62.38041 * 26 25 24 49 49 H 1.08998 * 113.61544 * 156.32397 * 28 14 13 50 50 H 1.09004 * 113.61702 * 25.41528 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0022 13 7 2.1983 -5.9795 -0.0027 14 6 1.4980 -7.2709 -0.0026 15 6 2.3268 -8.4211 -0.5986 16 6 2.8716 -8.6586 0.8198 17 6 3.0109 -10.1382 1.1831 18 7 3.6450 -10.2607 2.4980 19 6 3.8712 -11.4799 3.0262 20 8 3.5494 -12.4756 2.4130 21 6 4.5179 -11.6057 4.3816 22 1 5.4668 -11.0693 4.3828 23 6 3.5928 -11.0097 5.4459 24 6 4.2297 -11.1953 6.8265 25 6 4.4968 -12.6859 7.0572 26 6 5.3869 -13.2172 5.9306 27 8 4.7499 -12.9854 4.6726 28 6 1.5753 -8.0157 1.3405 29 1 -0.4849 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0016 31 1 0.6174 -4.9205 -0.8924 32 1 0.6167 -4.9209 0.8875 33 1 2.8332 -5.9122 -0.7840 34 1 0.4883 -7.2047 -0.4078 35 1 3.0854 -8.0907 -1.3081 36 1 1.7228 -9.2453 -0.9779 37 1 3.7681 -8.0812 1.0454 38 1 3.6252 -10.6397 0.4353 39 1 2.0239 -10.5999 1.2113 40 1 3.9027 -9.4643 2.9882 41 1 3.4500 -9.9469 5.2505 42 1 2.6295 -11.5188 5.4177 43 1 3.5510 -10.8233 7.5941 44 1 5.1695 -10.6450 6.8730 45 1 3.5517 -13.2288 7.0615 46 1 5.0005 -12.8218 8.0143 47 1 5.5451 -14.2870 6.0663 48 1 6.3472 -12.7020 5.9522 49 1 0.7646 -8.7285 1.4918 50 1 1.7273 -7.3581 2.1964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100247864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -107.774415 kcal Electronic energy + Delta-G solvation = -28682.033285 eV Core-core repulsion = 24516.283145 eV Total energy + Delta-G solvation = -4165.750140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.62206 -39.61734 -38.60628 -38.01963 -35.10984 -34.17076 -33.95645 -33.13835 -31.88603 -31.21890 -28.43303 -26.52300 -25.85046 -25.44723 -24.35065 -23.89937 -22.20295 -21.09150 -20.61111 -19.31233 -19.04947 -17.93620 -17.78258 -17.04995 -16.19836 -16.09883 -15.93428 -15.50610 -15.36057 -15.06343 -15.00495 -14.74641 -14.62901 -14.39474 -14.06792 -13.84232 -13.53492 -13.41650 -13.11400 -13.06521 -12.51014 -12.48300 -12.25566 -11.95355 -11.72791 -11.67966 -11.54775 -11.53636 -11.51517 -11.09970 -10.94746 -10.90662 -10.59985 -10.36506 -10.28576 -10.23774 -10.00598 -9.79352 -9.54473 -9.28320 -8.46581 -8.09768 -7.98358 -6.44186 -3.85050 2.35874 2.54723 3.14383 3.25109 3.32226 3.64205 3.88226 4.02719 4.19057 4.25046 4.29967 4.33702 4.46888 4.47902 4.54094 4.62125 4.69070 4.72644 4.77432 4.95483 5.07940 5.17443 5.19263 5.21711 5.23745 5.30033 5.43288 5.43956 5.52369 5.53421 5.56305 5.59352 5.65635 5.71624 5.78060 5.82924 5.92231 6.04783 6.10581 6.18563 6.27818 6.35303 6.67346 7.23803 7.24298 7.53077 7.63392 7.97528 8.04111 8.58643 9.15511 9.51919 10.03086 10.73579 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.001668 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.902598 B =16785.133527 C =17873.878226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.052 3.948 13 N -0.650 5.650 14 C 0.061 3.939 15 C -0.135 4.135 16 C -0.115 4.115 17 C 0.130 3.870 18 N -0.723 5.723 19 C 0.518 3.482 20 O -0.522 6.522 21 C 0.074 3.926 22 H 0.084 0.916 23 C -0.146 4.146 24 C -0.122 4.122 25 C -0.159 4.159 26 C 0.059 3.941 27 O -0.355 6.355 28 C -0.128 4.128 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.352 0.648 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.522 -23.257 10.334 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.284 5.284 14 C -0.050 4.050 15 C -0.173 4.173 16 C -0.133 4.133 17 C 0.007 3.993 18 N -0.377 5.377 19 C 0.303 3.697 20 O -0.397 6.397 21 C 0.013 3.987 22 H 0.101 0.899 23 C -0.184 4.184 24 C -0.159 4.159 25 C -0.197 4.197 26 C -0.018 4.018 27 O -0.273 6.273 28 C -0.166 4.166 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.172 0.828 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.117 0.883 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.009 -23.962 10.417 26.604 hybrid contribution -0.424 1.506 -0.400 1.615 sum 4.585 -22.456 10.017 25.013 Atomic orbital electron populations 1.69620 1.05944 1.28068 1.50631 1.25270 0.95639 0.99742 0.97319 0.85799 0.79703 0.81120 0.77713 1.19221 1.20758 1.20744 1.19756 0.93401 0.82228 1.47515 0.87862 1.41874 1.09215 1.04625 1.64316 1.19817 0.88379 0.84733 0.84474 1.90518 1.13765 1.87084 1.55467 1.21720 0.94333 0.90825 1.01196 1.59933 1.18345 0.99059 1.51019 1.22541 0.96394 0.89057 0.96964 1.23193 0.99693 0.98456 0.95976 1.22722 0.99620 0.93690 0.97294 1.21467 0.97886 0.96561 0.83383 1.45918 1.62929 1.07784 1.21069 1.20150 0.79194 0.83556 0.86818 1.90726 1.50314 1.36753 1.61921 1.21892 0.98814 0.85317 0.92677 0.89854 1.22149 0.99742 1.01905 0.94613 1.21593 1.01403 0.96357 0.96581 1.22227 1.01531 0.96658 0.99282 1.22672 0.94545 1.01722 0.82832 1.88062 1.80427 1.22020 1.36800 1.23114 0.96475 0.98718 0.98275 0.91913 0.77458 0.93802 0.89629 0.82770 0.92376 0.90790 0.89480 0.87792 0.91465 0.91369 0.76259 0.89965 0.90325 0.90798 0.91370 0.90811 0.90579 0.88339 0.92932 0.90224 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 10 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 11 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 12 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 13 N -0.65 -9.80 6.08 -107.13 -0.65 -10.46 16 14 C 0.06 0.69 4.22 -66.90 -0.28 0.41 16 15 C -0.13 -1.26 7.32 -25.92 -0.19 -1.45 16 16 C -0.11 -1.05 3.67 -89.81 -0.33 -1.38 16 17 C 0.13 1.20 5.51 -4.04 -0.02 1.18 16 18 N -0.72 -6.31 5.51 -60.29 -0.33 -6.64 16 19 C 0.52 5.77 7.18 -10.98 -0.08 5.69 16 20 O -0.52 -8.17 16.51 -14.30 -0.24 -8.41 16 21 C 0.07 0.64 3.05 -27.83 -0.09 0.56 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.15 -0.97 5.37 -26.59 -0.14 -1.11 16 24 C -0.12 -0.65 6.03 -26.55 -0.16 -0.81 16 25 C -0.16 -0.87 6.14 -26.59 -0.16 -1.04 16 26 C 0.06 0.39 6.84 37.20 0.25 0.65 16 27 O -0.36 -3.77 9.94 -55.09 -0.55 -4.32 16 28 C -0.13 -1.27 7.43 -25.92 -0.19 -1.46 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 31 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.35 5.52 8.09 -39.29 -0.32 5.21 16 34 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 36 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 40 H 0.40 2.65 8.31 -40.82 -0.34 2.31 16 41 H 0.08 0.43 7.98 -51.93 -0.41 0.02 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -34.21 407.99 -10.09 -44.31 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -8.46 Total: 12.48 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.75 Total: 4.25 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.32 Total: -54.82 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.70 Total: -28.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.21 -10.09 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100247864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.468 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds