Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47113 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00004 * 3 2 1 6 6 H 1.48501 * 109.46739 * 149.99998 * 3 2 1 7 7 C 1.38812 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47090 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00336 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99768 * 179.97438 * 19 18 17 22 22 C 1.47151 * 120.98082 * 359.71894 * 21 19 18 23 23 C 1.53711 * 108.15899 * 129.43296 * 22 21 19 24 24 O 1.42957 * 109.15129 * 52.53416 * 23 22 21 25 25 C 1.42960 * 114.16991 * 297.28952 * 24 23 22 26 26 C 1.47153 * 120.97885 * 179.97438 * 21 19 18 27 27 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 28 28 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 30 30 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 31 31 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 32 32 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 33 33 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 34 34 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 35 35 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 36 36 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 37 37 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 38 38 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 39 39 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 40 40 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 41 41 H 1.08996 * 109.68013 * 249.20832 * 22 21 19 42 42 H 1.08995 * 109.68139 * 9.76317 * 22 21 19 43 43 H 1.09002 * 109.65760 * 292.57157 * 23 22 21 44 44 H 1.08998 * 109.48712 * 172.40305 * 23 22 21 45 45 H 1.08994 * 109.51369 * 302.65424 * 25 24 23 46 46 H 1.09000 * 109.55716 * 182.52389 * 25 24 23 47 47 H 1.08996 * 109.68355 * 350.24144 * 26 21 19 48 48 H 1.09006 * 109.68027 * 110.79027 * 26 21 19 49 49 H 1.08999 * 113.61567 * 334.48111 * 27 10 9 50 50 H 1.08998 * 113.61196 * 105.38466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 4.7541 -2.8117 -1.3553 12 6 5.9717 -3.3183 -0.5591 13 6 7.3147 -2.9532 -1.1946 14 7 7.6946 -3.9864 -2.1613 15 6 8.8493 -3.8754 -2.8474 16 8 9.5737 -2.9199 -2.6649 17 6 9.2398 -4.9379 -3.8421 18 6 10.5829 -4.5728 -4.4775 19 6 10.9736 -5.6357 -5.4718 20 8 10.2490 -6.5908 -5.6547 21 7 12.1279 -5.5242 -6.1587 22 6 13.0197 -4.3708 -5.9592 23 6 14.4395 -4.9016 -5.7039 24 8 14.7973 -5.8064 -6.7512 25 6 13.9717 -6.9711 -6.8260 26 6 12.5308 -6.5495 -7.1343 27 6 5.5392 -2.3583 0.5617 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 0.0004 30 1 3.5373 -3.2915 0.4295 31 1 4.2305 -3.5962 -1.9015 32 1 4.9674 -1.9368 -1.9695 33 1 5.9067 -4.3704 -0.2820 34 1 7.2267 -1.9937 -1.7041 35 1 8.0770 -2.8837 -0.4185 36 1 7.1154 -4.7507 -2.3069 37 1 9.3272 -5.8977 -3.3330 38 1 8.4777 -5.0065 -4.6185 39 1 10.4949 -3.6130 -4.9868 40 1 11.3451 -4.5039 -3.7015 41 1 13.0140 -3.7438 -6.8507 42 1 12.6832 -3.7910 -5.0998 43 1 14.4697 -5.4223 -4.7468 44 1 15.1417 -4.0681 -5.6870 45 1 14.0002 -7.4994 -5.8730 46 1 14.3364 -7.6268 -7.6167 47 1 11.8705 -7.4129 -7.0534 48 1 12.4766 -6.1384 -8.1424 49 1 5.9668 -1.3598 0.4705 50 1 5.6490 -2.7772 1.5620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100947520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -85.016751 kcal Electronic energy + Delta-G solvation = -28534.117820 eV Core-core repulsion = 24369.354526 eV Total energy + Delta-G solvation = -4164.763294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92463 -39.93674 -38.87467 -38.51392 -35.31185 -34.84885 -33.48264 -33.28629 -31.90435 -30.77428 -28.82890 -27.83051 -25.68921 -25.22313 -24.48022 -23.55780 -22.44395 -21.01341 -20.57287 -19.58407 -19.31050 -18.18087 -17.44653 -17.08549 -16.76604 -16.64098 -16.32102 -16.05452 -15.77274 -15.63897 -15.37672 -14.92623 -14.70964 -14.31336 -14.26081 -13.97035 -13.55612 -13.41425 -13.12038 -12.86733 -12.71420 -12.62872 -12.25680 -12.13629 -12.02443 -12.00664 -11.67513 -11.61345 -11.52863 -11.34623 -10.92134 -10.79981 -10.51279 -10.41651 -10.26140 -10.16383 -9.96018 -9.81491 -9.56350 -9.16087 -9.13139 -8.91024 -7.28887 -5.80132 -3.15753 2.11845 2.25607 2.47449 3.05888 3.19509 3.35908 3.39013 3.43940 3.95652 4.08860 4.29365 4.41828 4.46178 4.53521 4.56500 4.60636 4.67240 4.69713 4.84002 4.85523 4.90310 4.98857 5.08215 5.10190 5.15958 5.21682 5.30041 5.37060 5.39140 5.40485 5.49916 5.62847 5.69895 5.77085 5.80739 5.82496 6.14790 6.15306 6.20501 6.34787 6.45547 6.48295 6.65820 6.74700 6.95702 7.35293 7.61697 7.96346 8.05570 8.39638 9.17530 9.90269 10.09973 11.38054 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.001517 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.627027 B =18448.154387 C =18650.888379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.160 4.160 12 C -0.127 4.127 13 C 0.131 3.869 14 N -0.724 5.724 15 C 0.511 3.489 16 O -0.549 6.549 17 C -0.126 4.126 18 C -0.123 4.123 19 C 0.519 3.481 20 O -0.538 6.538 21 N -0.620 5.620 22 C 0.069 3.931 23 C 0.046 3.954 24 O -0.380 6.380 25 C 0.048 3.952 26 C 0.075 3.925 27 C -0.145 4.145 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.056 -14.232 -12.041 36.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.201 4.201 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.375 5.375 15 C 0.297 3.703 16 O -0.427 6.427 17 C -0.167 4.167 18 C -0.163 4.163 19 C 0.308 3.692 20 O -0.415 6.415 21 N -0.355 5.355 22 C -0.054 4.054 23 C -0.031 4.031 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.047 4.047 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.127 0.873 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 31.025 -14.051 -12.094 36.142 hybrid contribution 0.064 0.899 0.026 0.902 sum 31.089 -13.152 -12.068 35.849 Atomic orbital electron populations 1.69703 1.05130 1.25879 1.57293 1.24694 0.95252 0.97262 1.01862 0.86554 0.79234 0.84959 0.77821 1.21053 1.21681 1.20285 1.19140 0.80706 0.94773 1.43264 0.89137 1.42761 1.04084 1.02017 1.88862 1.21510 0.89487 0.90002 0.93011 1.23957 0.95728 1.00542 0.99901 1.22693 0.93245 0.99887 0.98825 1.21435 0.95925 0.90930 0.90902 1.46052 1.22428 1.26668 1.42333 1.20590 0.81081 0.87157 0.81441 1.90699 1.51947 1.33327 1.66708 1.21381 0.97872 0.98727 0.98691 1.21393 0.98417 0.98361 0.98151 1.20805 0.80022 0.87309 0.81074 1.90712 1.50967 1.33347 1.66425 1.48156 1.21572 1.23908 1.41887 1.22619 0.90496 0.88435 1.03852 1.23081 0.95272 0.94002 0.90768 1.87983 1.55383 1.32935 1.53486 1.22996 0.89646 0.87804 1.02519 1.22299 0.96662 0.93276 0.92471 1.23445 0.98939 0.98879 0.97178 0.93027 0.80460 0.89895 0.92234 0.90452 0.89052 0.91314 0.91725 0.76311 0.88104 0.87967 0.87855 0.88006 0.90039 0.88052 0.92366 0.87311 0.92528 0.87454 0.87914 0.90546 0.90341 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 7 C -0.25 -6.95 10.45 -15.06 -0.16 -7.11 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -17.13 5.21 -52.64 -0.27 -17.41 16 10 C 0.17 3.11 4.47 -67.12 -0.30 2.81 16 11 C -0.16 -2.46 7.45 -25.77 -0.19 -2.65 16 12 C -0.13 -1.54 3.76 -89.67 -0.34 -1.87 16 13 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 14 N -0.72 -7.24 5.56 -60.29 -0.33 -7.58 16 15 C 0.51 5.50 7.83 -10.99 -0.09 5.41 16 16 O -0.55 -7.74 15.98 5.56 0.09 -7.65 16 17 C -0.13 -1.03 4.99 -27.88 -0.14 -1.16 16 18 C -0.12 -0.92 3.36 -27.88 -0.09 -1.01 16 19 C 0.52 4.52 7.71 -10.98 -0.08 4.43 16 20 O -0.54 -6.37 15.45 5.56 0.09 -6.29 16 21 N -0.62 -4.28 3.01 -172.05 -0.52 -4.80 16 22 C 0.07 0.32 6.57 -3.32 -0.02 0.30 16 23 C 0.05 0.21 7.00 37.53 0.26 0.47 16 24 O -0.38 -2.48 10.74 -35.23 -0.38 -2.86 16 25 C 0.05 0.24 6.98 37.29 0.26 0.50 16 26 C 0.08 0.46 6.63 -3.55 -0.02 0.44 16 27 C -0.14 -2.09 7.39 -25.92 -0.19 -2.28 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.36 8.31 5.77 -40.82 -0.24 8.08 16 30 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 37 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.10 0.74 7.96 -51.93 -0.41 0.33 16 40 H 0.10 0.68 7.63 -51.93 -0.40 0.28 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.36 6.05 -51.93 -0.31 0.05 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.10 0.71 7.08 -51.93 -0.37 0.35 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -35.90 402.88 -8.81 -44.72 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.39 Total: 7.01 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.22 Total: -0.15 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.35 Total: -58.16 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.20 Total: -16.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.90 -8.81 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100947520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.299 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds