Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47113 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00004 * 3 2 1 6 6 H 1.48501 * 109.46739 * 149.99998 * 3 2 1 7 7 C 1.38812 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47090 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00336 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99768 * 179.97438 * 19 18 17 22 22 C 1.47151 * 120.98082 * 359.71894 * 21 19 18 23 23 C 1.53711 * 108.15899 * 129.43296 * 22 21 19 24 24 O 1.42957 * 109.15129 * 52.53416 * 23 22 21 25 25 C 1.42960 * 114.16991 * 297.28952 * 24 23 22 26 26 C 1.47153 * 120.97885 * 179.97438 * 21 19 18 27 27 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 28 28 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 30 30 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 31 31 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 32 32 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 33 33 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 34 34 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 35 35 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 36 36 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 37 37 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 38 38 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 39 39 H 1.09005 * 109.46587 * 299.99693 * 18 17 15 40 40 H 1.08995 * 109.46937 * 59.99982 * 18 17 15 41 41 H 1.08996 * 109.68013 * 249.20832 * 22 21 19 42 42 H 1.08995 * 109.68139 * 9.76317 * 22 21 19 43 43 H 1.09002 * 109.65760 * 292.57157 * 23 22 21 44 44 H 1.08998 * 109.48712 * 172.40305 * 23 22 21 45 45 H 1.08994 * 109.51369 * 302.65424 * 25 24 23 46 46 H 1.09000 * 109.55716 * 182.52389 * 25 24 23 47 47 H 1.08996 * 109.68355 * 350.24144 * 26 21 19 48 48 H 1.09006 * 109.68027 * 110.79027 * 26 21 19 49 49 H 1.08999 * 113.61567 * 334.48111 * 27 10 9 50 50 H 1.08998 * 113.61196 * 105.38466 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 4.7541 -2.8117 -1.3553 12 6 5.9717 -3.3183 -0.5591 13 6 7.3147 -2.9532 -1.1946 14 7 7.6946 -3.9864 -2.1613 15 6 8.8493 -3.8754 -2.8474 16 8 9.5737 -2.9199 -2.6649 17 6 9.2398 -4.9379 -3.8421 18 6 10.5829 -4.5728 -4.4775 19 6 10.9736 -5.6357 -5.4718 20 8 10.2490 -6.5908 -5.6547 21 7 12.1279 -5.5242 -6.1587 22 6 13.0197 -4.3708 -5.9592 23 6 14.4395 -4.9016 -5.7039 24 8 14.7973 -5.8064 -6.7512 25 6 13.9717 -6.9711 -6.8260 26 6 12.5308 -6.5495 -7.1343 27 6 5.5392 -2.3583 0.5617 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3622 0.0004 30 1 3.5373 -3.2915 0.4295 31 1 4.2305 -3.5962 -1.9015 32 1 4.9674 -1.9368 -1.9695 33 1 5.9067 -4.3704 -0.2820 34 1 7.2267 -1.9937 -1.7041 35 1 8.0770 -2.8837 -0.4185 36 1 7.1154 -4.7507 -2.3069 37 1 9.3272 -5.8977 -3.3330 38 1 8.4777 -5.0065 -4.6185 39 1 10.4949 -3.6130 -4.9868 40 1 11.3451 -4.5039 -3.7015 41 1 13.0140 -3.7438 -6.8507 42 1 12.6832 -3.7910 -5.0998 43 1 14.4697 -5.4223 -4.7468 44 1 15.1417 -4.0681 -5.6870 45 1 14.0002 -7.4994 -5.8730 46 1 14.3364 -7.6268 -7.6167 47 1 11.8705 -7.4129 -7.0534 48 1 12.4766 -6.1384 -8.1424 49 1 5.9668 -1.3598 0.4705 50 1 5.6490 -2.7772 1.5620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100947520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -111.790520 kcal Electronic energy + Delta-G solvation = -28535.278818 eV Core-core repulsion = 24369.354526 eV Total energy + Delta-G solvation = -4165.924292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52127 -40.81335 -39.85843 -39.29642 -36.12547 -35.86029 -34.99230 -34.07807 -32.75736 -32.31411 -29.54657 -28.70932 -26.51797 -26.45635 -25.38882 -24.80771 -23.00459 -22.33517 -21.49905 -20.66604 -20.11687 -19.37055 -18.82065 -17.67835 -17.44121 -17.27947 -17.20066 -16.66044 -16.57146 -16.43184 -16.12612 -16.01968 -15.93316 -15.61851 -15.03996 -14.90482 -14.71635 -14.38208 -14.20153 -13.96531 -13.69832 -13.57979 -13.25261 -13.14508 -13.10314 -13.02062 -12.68862 -12.65974 -12.38378 -12.20949 -12.15327 -11.91860 -11.77961 -11.71226 -11.57402 -11.26739 -11.13496 -10.91988 -10.90230 -10.80037 -10.03666 -9.67510 -9.26532 -8.02935 -5.35328 1.37256 1.40100 1.47411 1.47734 1.63989 1.72264 2.27973 2.47812 2.84628 3.27560 3.36749 3.60159 3.69389 3.71234 3.77837 3.81530 3.98684 4.05132 4.05473 4.08115 4.10897 4.20529 4.25595 4.29106 4.39445 4.45651 4.57204 4.60539 4.64450 4.73719 4.78487 4.81755 4.83624 4.90115 4.91687 4.95874 4.98259 5.05132 5.22907 5.32117 5.34788 5.47407 5.67111 5.78220 6.08306 6.19743 6.22942 6.57018 6.99493 7.08134 7.25263 7.86537 8.04173 9.18600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.001517 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.627027 B =18448.154387 C =18650.888379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.233 4.233 8 H 0.058 0.942 9 N -0.744 5.744 10 C 0.144 3.856 11 C -0.155 4.155 12 C -0.097 4.097 13 C 0.137 3.863 14 N -0.717 5.717 15 C 0.513 3.487 16 O -0.583 6.583 17 C -0.118 4.118 18 C -0.118 4.118 19 C 0.518 3.482 20 O -0.575 6.575 21 N -0.619 5.619 22 C 0.067 3.933 23 C 0.044 3.956 24 O -0.397 6.397 25 C 0.051 3.949 26 C 0.073 3.927 27 C -0.135 4.135 28 H 0.257 0.743 29 H 0.365 0.635 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.415 0.585 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.055 0.945 46 H 0.124 0.876 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.059 -14.430 -12.110 38.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.176 1.176 7 C -0.364 4.364 8 H 0.076 0.924 9 N -0.386 5.386 10 C 0.035 3.965 11 C -0.196 4.196 12 C -0.116 4.116 13 C 0.013 3.987 14 N -0.369 5.369 15 C 0.300 3.700 16 O -0.463 6.463 17 C -0.159 4.159 18 C -0.158 4.158 19 C 0.307 3.693 20 O -0.455 6.455 21 N -0.354 5.354 22 C -0.055 4.055 23 C -0.033 4.033 24 O -0.315 6.315 25 C -0.026 4.026 26 C -0.049 4.049 27 C -0.174 4.174 28 H 0.066 0.934 29 H 0.198 0.802 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.252 0.748 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.110 0.890 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 34.107 -14.298 -12.172 38.934 hybrid contribution -0.852 0.845 0.025 1.201 sum 33.254 -13.452 -12.147 37.873 Atomic orbital electron populations 1.69884 1.07124 1.26591 1.59887 1.25507 0.96104 1.01221 1.02850 0.85424 0.78701 0.79788 0.77964 1.20720 1.22310 1.17585 1.19138 0.82908 0.93455 1.40897 0.92351 1.42789 1.02402 1.04062 1.89303 1.21952 0.90962 0.87901 0.95699 1.23785 0.97008 1.00405 0.98353 1.22518 0.91962 1.00732 0.96436 1.21244 0.95598 0.90675 0.91145 1.45973 1.22505 1.26642 1.41757 1.20964 0.80655 0.87032 0.81333 1.90687 1.53019 1.34807 1.67834 1.21334 0.98277 0.98144 0.98097 1.21361 0.98368 0.97954 0.98082 1.20990 0.80118 0.86983 0.81163 1.90693 1.52256 1.34828 1.67759 1.48280 1.21285 1.24515 1.41279 1.22792 0.90215 0.87805 1.04711 1.23231 0.95461 0.94313 0.90316 1.87962 1.55837 1.33490 1.54232 1.23034 0.88780 0.87688 1.03082 1.22355 0.97145 0.92860 0.92582 1.23333 0.95544 0.99735 0.98772 0.93429 0.80169 0.90610 0.91788 0.91660 0.86380 0.93009 0.91318 0.74819 0.87055 0.87660 0.87507 0.87022 0.89437 0.86838 0.92250 0.85437 0.92710 0.85776 0.89033 0.90094 0.90427 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.95 45.70 27.74 68.60 1.90 47.60 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -10.83 6.52 99.48 0.65 -10.18 16 7 C -0.23 -13.21 10.45 84.03 0.88 -12.33 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.74 -34.09 5.21 -320.44 -1.67 -35.76 16 10 C 0.14 5.04 4.47 45.52 0.20 5.24 16 11 C -0.16 -4.48 7.45 31.21 0.23 -4.24 16 12 C -0.10 -2.05 3.76 -10.18 -0.04 -2.09 16 13 C 0.14 2.85 5.51 86.38 0.48 3.33 16 14 N -0.72 -12.43 5.56 -463.06 -2.57 -15.01 16 15 C 0.51 9.94 7.83 87.66 0.69 10.62 16 16 O -0.58 -15.41 15.98 -3.04 -0.05 -15.46 16 17 C -0.12 -1.69 4.99 29.85 0.15 -1.55 16 18 C -0.12 -1.55 3.36 29.85 0.10 -1.45 16 19 C 0.52 8.46 7.71 87.66 0.68 9.13 16 20 O -0.58 -13.34 15.45 -3.03 -0.05 -13.38 16 21 N -0.62 -7.83 3.01 -816.62 -2.46 -10.29 16 22 C 0.07 0.50 6.57 86.49 0.57 1.07 16 23 C 0.04 0.31 7.00 72.22 0.51 0.81 16 24 O -0.40 -4.57 10.74 -148.98 -1.60 -6.17 16 25 C 0.05 0.46 6.98 72.07 0.50 0.97 16 26 C 0.07 0.84 6.63 86.34 0.57 1.41 16 27 C -0.13 -3.52 7.39 31.12 0.23 -3.29 16 28 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 29 H 0.36 16.15 5.77 -92.71 -0.53 15.62 16 30 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 2.07 7.90 -2.39 -0.02 2.05 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.29 7.85 -2.39 -0.02 1.27 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.42 5.17 8.47 -92.71 -0.79 4.38 16 37 H 0.11 1.39 8.10 -2.38 -0.02 1.37 16 38 H 0.11 1.48 8.10 -2.38 -0.02 1.47 16 39 H 0.11 1.35 7.96 -2.38 -0.02 1.34 16 40 H 0.11 1.26 7.63 -2.39 -0.02 1.24 16 41 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.11 0.57 6.05 -2.39 -0.01 0.55 16 43 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 1.27 7.08 -2.39 -0.02 1.25 16 48 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 50 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.02 402.88 -0.42 -79.44 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.43 Total: 27.81 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 6.21 Total: 4.23 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.40 Total: -124.07 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.70 Total: -35.01 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -79.02 -0.42 -79.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100947520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.354 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds