Wall clock time and date at job start Sat Apr 11 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99671 * 2 1 4 4 H 1.48504 * 109.47123 * 239.99453 * 3 2 1 5 5 H 1.48501 * 109.47572 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47137 * 120.00042 * 3 2 1 7 7 C 1.38945 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99893 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00052 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47339 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00127 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47289 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47357 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47201 * 180.02562 * 16 15 14 18 18 C 1.34780 * 120.00085 * 180.02562 * 17 16 15 19 19 O 1.21282 * 119.99754 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.99911 * 180.02562 * 18 17 16 21 21 H 1.08996 * 115.55661 * 60.05439 * 20 18 17 22 22 C 1.53059 * 117.53223 * 205.80308 * 20 18 17 23 23 C 1.52699 * 59.93335 * 107.45396 * 22 20 18 24 24 C 1.53251 * 117.88280 * 107.78546 * 23 22 20 25 25 C 1.53336 * 108.48191 * 196.26756 * 24 23 22 26 26 O 1.42872 * 109.31735 * 306.01172 * 25 24 23 27 27 C 1.42867 * 114.51508 * 64.37026 * 26 25 24 28 28 C 1.53245 * 117.88627 * 252.21313 * 23 22 20 29 29 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00549 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46963 * 59.99327 * 12 10 9 32 32 H 1.08997 * 109.47097 * 299.99857 * 12 10 9 33 33 H 1.00908 * 110.99720 * 56.04411 * 13 12 10 34 34 H 1.09000 * 109.46681 * 60.00745 * 14 13 12 35 35 H 1.08996 * 109.47691 * 300.00466 * 14 13 12 36 36 H 1.09004 * 109.46688 * 60.00048 * 15 14 13 37 37 H 1.08996 * 109.47241 * 300.00872 * 15 14 13 38 38 H 1.09002 * 109.46745 * 60.00260 * 16 15 14 39 39 H 1.08996 * 109.47579 * 300.00570 * 16 15 14 40 40 H 0.97003 * 119.99878 * 0.02562 * 17 16 15 41 41 H 1.08998 * 117.51090 * 359.97438 * 22 20 18 42 42 H 1.09001 * 117.50767 * 214.92154 * 22 20 18 43 43 H 1.09006 * 109.63746 * 315.96521 * 24 23 22 44 44 H 1.09000 * 109.63520 * 76.57149 * 24 23 22 45 45 H 1.08996 * 109.49742 * 186.05148 * 25 24 23 46 46 H 1.09004 * 109.49404 * 65.95999 * 25 24 23 47 47 H 1.08997 * 109.49470 * 175.67229 * 27 26 25 48 48 H 1.09003 * 109.49458 * 55.58061 * 27 26 25 49 49 H 1.09003 * 109.63722 * 283.43466 * 28 23 22 50 50 H 1.09002 * 109.63278 * 44.03268 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 1.4981 -7.2708 0.0018 15 6 2.5230 -8.4068 0.0019 16 6 1.7937 -9.7517 0.0014 17 7 2.7751 -10.8394 0.0021 18 6 2.3599 -12.1217 0.0013 19 8 1.1738 -12.3750 -0.0006 20 6 3.3694 -13.2405 0.0026 21 1 4.0475 -13.2610 0.8557 22 6 2.9371 -14.5843 -0.5891 23 6 3.9201 -13.6953 -1.3474 24 6 5.3859 -14.1383 -1.4097 25 6 6.2382 -12.9390 -1.8414 26 8 5.7186 -12.4040 -3.0600 27 6 4.4025 -11.8583 -2.9543 28 6 3.4156 -12.9784 -2.6043 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6181 -4.9208 -0.8897 32 1 0.6162 -4.9205 0.8903 33 1 2.8327 -5.9123 0.7836 34 1 0.8737 -7.3455 -0.8885 35 1 0.8728 -7.3450 0.8914 36 1 3.1478 -8.3322 0.8920 37 1 3.1480 -8.3324 -0.8879 38 1 1.1692 -9.8260 -0.8889 39 1 1.1684 -9.8264 0.8910 40 1 3.7237 -10.6368 0.0032 41 1 1.9220 -14.6595 -0.9791 42 1 3.3308 -15.4887 -0.1252 43 1 5.7072 -14.4809 -0.4261 44 1 5.4943 -14.9446 -2.1351 45 1 7.2680 -13.2611 -1.9953 46 1 6.2081 -12.1734 -1.0660 47 1 4.1184 -11.4070 -3.9049 48 1 4.3849 -11.1001 -2.1714 49 1 3.3567 -13.6863 -3.4311 50 1 2.4309 -12.5522 -2.4125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177581314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:36 Heat of formation + Delta-G solvation = -106.974382 kcal Electronic energy + Delta-G solvation = -28711.078519 eV Core-core repulsion = 24545.363071 eV Total energy + Delta-G solvation = -4165.715448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.02047 -39.22814 -38.33444 -37.06195 -36.38606 -34.90144 -33.85475 -31.79149 -31.52979 -31.14193 -30.59285 -27.41456 -25.52376 -24.29793 -24.18274 -23.32235 -22.74217 -21.77303 -20.72188 -19.41014 -19.16177 -17.89861 -17.45889 -16.79271 -16.51981 -16.48667 -16.18248 -15.81141 -15.52657 -15.34744 -14.95573 -14.68051 -14.49413 -14.24147 -13.93747 -13.84173 -13.59853 -13.50136 -13.40144 -12.93734 -12.86262 -12.49574 -12.09974 -11.92663 -11.85841 -11.84403 -11.58334 -11.47751 -11.45362 -11.23317 -11.09332 -10.96526 -10.87353 -10.56604 -10.44872 -10.22267 -10.14452 -9.72297 -9.50993 -9.39445 -8.49015 -8.09727 -7.97096 -6.42379 -3.83407 2.18316 2.71534 3.16908 3.19595 3.25407 3.29755 3.43476 3.89565 3.97191 4.07184 4.12103 4.25073 4.27658 4.30092 4.50355 4.55374 4.70960 4.76738 4.93189 4.95175 4.95667 5.01703 5.07925 5.15268 5.17609 5.22301 5.24838 5.28934 5.36985 5.38714 5.45819 5.52745 5.55373 5.59220 5.65335 5.69443 5.77118 5.92648 5.95898 5.99251 6.11184 6.25404 6.77874 7.12997 7.16581 7.54229 7.61490 7.87546 8.05107 8.60289 9.16813 9.53238 10.04625 10.75215 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.001567 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.985338 B =17864.256729 C =18696.146456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.669 5.669 14 C 0.063 3.937 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.724 5.724 18 C 0.544 3.456 19 O -0.538 6.538 20 C -0.185 4.185 21 H 0.128 0.872 22 C -0.135 4.135 23 C -0.105 4.105 24 C -0.118 4.118 25 C 0.061 3.939 26 O -0.380 6.380 27 C 0.064 3.936 28 C -0.123 4.123 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.349 0.651 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.081 0.919 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -30.015 -1.157 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.302 5.302 14 C -0.068 4.068 15 C -0.167 4.167 16 C -0.004 4.004 17 N -0.376 5.376 18 C 0.330 3.670 19 O -0.414 6.414 20 C -0.205 4.205 21 H 0.146 0.854 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.155 4.155 25 C -0.015 4.015 26 O -0.299 6.299 27 C -0.013 4.013 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.168 0.832 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.115 0.885 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.393 -29.981 -2.007 30.721 hybrid contribution -0.376 0.961 1.365 1.711 sum 6.018 -29.020 -0.642 29.644 Atomic orbital electron populations 1.69606 1.05937 1.28285 1.50451 1.25269 0.95646 0.99743 0.97278 0.85907 0.78751 0.80417 0.79070 1.19873 1.20969 1.19926 1.19657 0.93357 0.82248 1.47766 0.87961 1.41858 1.09215 1.04601 1.64286 1.19806 0.88383 0.84728 0.84541 1.90518 1.13765 1.87078 1.55500 1.21671 0.94332 0.90919 1.01291 1.60062 1.18950 0.99891 1.51258 1.21824 0.95308 0.88808 1.00827 1.21744 0.98983 0.92326 1.03673 1.21353 0.91336 0.85085 1.02625 1.46007 1.10593 1.05575 1.75426 1.19597 0.88798 0.83084 0.75502 1.90723 1.17467 1.83948 1.49299 1.22436 1.02398 0.96449 0.99265 0.85382 1.23032 1.00340 0.92496 1.01320 1.21522 0.95408 1.02424 0.91199 1.21875 0.91834 0.99178 1.02661 1.22615 0.97423 0.94398 0.87112 1.87905 1.30941 1.78359 1.32693 1.22612 0.82059 0.94193 1.02423 1.21884 0.99388 0.98556 0.96192 0.91805 0.77434 0.89538 0.93819 0.83204 0.90769 0.95245 0.91253 0.90112 0.91167 0.91379 0.76479 0.87503 0.87714 0.90410 0.90014 0.88584 0.92999 0.88461 0.92952 0.89997 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 11 O -0.58 -15.84 15.78 5.54 0.09 -15.75 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.43 6.13 -115.06 -0.70 -11.14 16 14 C 0.06 0.71 5.68 -3.82 -0.02 0.69 16 15 C -0.13 -1.15 5.59 -26.73 -0.15 -1.30 16 16 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 17 N -0.72 -5.59 5.43 -60.30 -0.33 -5.92 16 18 C 0.54 5.16 5.84 -10.99 -0.06 5.09 16 19 O -0.54 -7.28 16.57 5.56 0.09 -7.19 16 20 C -0.18 -1.24 5.87 -91.88 -0.54 -1.78 16 21 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.13 -0.87 9.52 -26.85 -0.26 -1.13 16 23 C -0.11 -0.64 2.03 -154.55 -0.31 -0.95 16 24 C -0.12 -0.56 5.92 -26.43 -0.16 -0.72 16 25 C 0.06 0.34 6.85 37.33 0.26 0.60 16 26 O -0.38 -3.17 10.69 -35.23 -0.38 -3.55 16 27 C 0.06 0.46 6.84 37.33 0.26 0.72 16 28 C -0.12 -0.86 5.58 -26.43 -0.15 -1.01 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.40 2.30 8.18 -40.82 -0.33 1.97 16 41 H 0.11 0.85 7.91 -51.93 -0.41 0.44 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.35 7.72 -51.93 -0.40 -0.05 16 49 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.64 6.83 -51.93 -0.35 0.29 16 LS Contribution 411.01 15.07 6.19 6.19 Total: -1.00 -33.97 411.01 -9.33 -43.31 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -8.43 Total: 11.85 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.52 Total: 4.32 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.37 Total: -55.20 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.20 Total: -26.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.97 -9.33 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177581314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.666 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds