Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 119.99671 * 2 1 4 4 H 1.48504 * 109.47123 * 239.99453 * 3 2 1 5 5 H 1.48501 * 109.47572 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47137 * 120.00042 * 3 2 1 7 7 C 1.38945 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99550 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99893 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00052 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47339 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00127 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47289 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.47357 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47201 * 180.02562 * 16 15 14 18 18 C 1.34780 * 120.00085 * 180.02562 * 17 16 15 19 19 O 1.21282 * 119.99754 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.99911 * 180.02562 * 18 17 16 21 21 H 1.08996 * 115.55661 * 60.05439 * 20 18 17 22 22 C 1.53059 * 117.53223 * 205.80308 * 20 18 17 23 23 C 1.52699 * 59.93335 * 107.45396 * 22 20 18 24 24 C 1.53251 * 117.88280 * 107.78546 * 23 22 20 25 25 C 1.53336 * 108.48191 * 196.26756 * 24 23 22 26 26 O 1.42872 * 109.31735 * 306.01172 * 25 24 23 27 27 C 1.42867 * 114.51508 * 64.37026 * 26 25 24 28 28 C 1.53245 * 117.88627 * 252.21313 * 23 22 20 29 29 H 0.97003 * 119.99912 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00549 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46963 * 59.99327 * 12 10 9 32 32 H 1.08997 * 109.47097 * 299.99857 * 12 10 9 33 33 H 1.00908 * 110.99720 * 56.04411 * 13 12 10 34 34 H 1.09000 * 109.46681 * 60.00745 * 14 13 12 35 35 H 1.08996 * 109.47691 * 300.00466 * 14 13 12 36 36 H 1.09004 * 109.46688 * 60.00048 * 15 14 13 37 37 H 1.08996 * 109.47241 * 300.00872 * 15 14 13 38 38 H 1.09002 * 109.46745 * 60.00260 * 16 15 14 39 39 H 1.08996 * 109.47579 * 300.00570 * 16 15 14 40 40 H 0.97003 * 119.99878 * 0.02562 * 17 16 15 41 41 H 1.08998 * 117.51090 * 359.97438 * 22 20 18 42 42 H 1.09001 * 117.50767 * 214.92154 * 22 20 18 43 43 H 1.09006 * 109.63746 * 315.96521 * 24 23 22 44 44 H 1.09000 * 109.63520 * 76.57149 * 24 23 22 45 45 H 1.08996 * 109.49742 * 186.05148 * 25 24 23 46 46 H 1.09004 * 109.49404 * 65.95999 * 25 24 23 47 47 H 1.08997 * 109.49470 * 175.67229 * 27 26 25 48 48 H 1.09003 * 109.49458 * 55.58061 * 27 26 25 49 49 H 1.09003 * 109.63722 * 283.43466 * 28 23 22 50 50 H 1.09002 * 109.63278 * 44.03268 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0017 14 6 1.4981 -7.2708 0.0018 15 6 2.5230 -8.4068 0.0019 16 6 1.7937 -9.7517 0.0014 17 7 2.7751 -10.8394 0.0021 18 6 2.3599 -12.1217 0.0013 19 8 1.1738 -12.3750 -0.0006 20 6 3.3694 -13.2405 0.0026 21 1 4.0475 -13.2610 0.8557 22 6 2.9371 -14.5843 -0.5891 23 6 3.9201 -13.6953 -1.3474 24 6 5.3859 -14.1383 -1.4097 25 6 6.2382 -12.9390 -1.8414 26 8 5.7186 -12.4040 -3.0600 27 6 4.4025 -11.8583 -2.9543 28 6 3.4156 -12.9784 -2.6043 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6181 -4.9208 -0.8897 32 1 0.6162 -4.9205 0.8903 33 1 2.8327 -5.9123 0.7836 34 1 0.8737 -7.3455 -0.8885 35 1 0.8728 -7.3450 0.8914 36 1 3.1478 -8.3322 0.8920 37 1 3.1480 -8.3324 -0.8879 38 1 1.1692 -9.8260 -0.8889 39 1 1.1684 -9.8264 0.8910 40 1 3.7237 -10.6368 0.0032 41 1 1.9220 -14.6595 -0.9791 42 1 3.3308 -15.4887 -0.1252 43 1 5.7072 -14.4809 -0.4261 44 1 5.4943 -14.9446 -2.1351 45 1 7.2680 -13.2611 -1.9953 46 1 6.2081 -12.1734 -1.0660 47 1 4.1184 -11.4070 -3.9049 48 1 4.3849 -11.1001 -2.1714 49 1 3.3567 -13.6863 -3.4311 50 1 2.4309 -12.5522 -2.4125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177581314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -133.179046 kcal Electronic energy + Delta-G solvation = -28712.214839 eV Core-core repulsion = 24545.363071 eV Total energy + Delta-G solvation = -4166.851768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63216 -40.17297 -39.85910 -37.83494 -37.25353 -36.11479 -35.63900 -33.29860 -32.46248 -32.17723 -31.12914 -28.73048 -26.84320 -25.51122 -24.72887 -24.08416 -23.49455 -22.60132 -21.40230 -21.04614 -19.96144 -19.83859 -18.13354 -17.85009 -17.37563 -17.14259 -17.04909 -16.96967 -16.57222 -16.31441 -15.98387 -15.91771 -15.69059 -15.42049 -15.11030 -14.78435 -14.67952 -14.34325 -14.23500 -14.01736 -13.55807 -13.44534 -13.36559 -13.19415 -13.02239 -12.86322 -12.74870 -12.44725 -12.43178 -12.31508 -12.12467 -12.09054 -11.87132 -11.72228 -11.50388 -11.38126 -11.14302 -10.82916 -10.36154 -10.27272 -10.10684 -10.02395 -9.34840 -8.46853 -5.95951 1.39989 1.42013 1.47570 1.53031 2.04194 2.05049 2.29507 2.63553 2.93602 2.95470 3.20327 3.46592 3.51752 3.62118 3.74114 3.81416 3.97394 3.99074 4.03527 4.13254 4.19988 4.24862 4.33132 4.47374 4.48124 4.50745 4.54783 4.57801 4.60742 4.68501 4.73567 4.76423 4.77655 4.84302 4.91533 5.01826 5.10187 5.13854 5.17434 5.20314 5.23567 5.40106 5.40373 5.87445 6.08730 6.29123 6.39622 6.48514 6.59379 7.11798 7.18382 7.55447 8.10447 8.70197 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.001567 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.985338 B =17864.256729 C =18696.146456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.063 3.937 15 C -0.115 4.115 16 C 0.127 3.873 17 N -0.713 5.713 18 C 0.541 3.459 19 O -0.584 6.584 20 C -0.184 4.184 21 H 0.154 0.846 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.111 4.111 25 C 0.053 3.947 26 O -0.402 6.402 27 C 0.064 3.936 28 C -0.121 4.121 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.345 0.655 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.056 0.944 49 H 0.079 0.921 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -30.833 -0.555 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.153 4.153 16 C 0.002 3.998 17 N -0.365 5.365 18 C 0.329 3.671 19 O -0.465 6.465 20 C -0.205 4.205 21 H 0.171 0.829 22 C -0.175 4.175 23 C -0.098 4.098 24 C -0.148 4.148 25 C -0.023 4.023 26 O -0.321 6.321 27 C -0.012 4.012 28 C -0.158 4.158 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.164 0.836 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.104 0.896 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.074 0.926 49 H 0.098 0.902 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.230 -30.810 -1.406 31.678 hybrid contribution -0.638 1.164 1.158 1.761 sum 6.593 -29.646 -0.248 30.371 Atomic orbital electron populations 1.69669 1.06846 1.29385 1.50182 1.26059 0.96565 1.02473 0.96219 0.84974 0.77744 0.76561 0.78968 1.19735 1.19511 1.19618 1.19646 0.92757 0.84041 1.50101 0.90230 1.41938 1.09355 1.04748 1.64985 1.20888 0.88276 0.86181 0.82241 1.90485 1.15815 1.87975 1.56711 1.21534 0.94055 0.88131 1.03118 1.60062 1.19177 1.00901 1.51395 1.21905 0.95833 0.87354 1.01566 1.21583 0.98318 0.91391 1.04010 1.21197 0.91361 0.85219 1.01980 1.45915 1.11116 1.05020 1.74421 1.20090 0.88665 0.83932 0.74429 1.90701 1.19546 1.84632 1.51573 1.22490 1.02103 0.95412 1.00481 0.82895 1.23083 0.99554 0.93350 1.01537 1.21533 0.96272 1.01828 0.90215 1.21872 0.90310 0.98745 1.03910 1.22841 0.98115 0.94906 0.86455 1.87876 1.31139 1.78680 1.34394 1.22600 0.81933 0.94209 1.02487 1.21820 0.98522 0.98622 0.96878 0.91286 0.76965 0.87865 0.91544 0.83604 0.90349 0.94095 0.90409 0.90266 0.91969 0.91973 0.75066 0.89593 0.85500 0.88172 0.90011 0.87348 0.92154 0.88705 0.92604 0.90195 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 2 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 3 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 10 C 0.44 20.68 7.82 87.66 0.69 21.36 16 11 O -0.62 -34.33 15.78 -3.08 -0.05 -34.38 16 12 C 0.06 2.15 6.17 85.56 0.53 2.68 16 13 N -0.68 -20.39 6.13 -517.95 -3.17 -23.57 16 14 C 0.06 1.31 5.68 86.30 0.49 1.80 16 15 C -0.11 -1.87 5.59 30.59 0.17 -1.70 16 16 C 0.13 2.08 5.67 86.38 0.49 2.57 16 17 N -0.71 -10.19 5.43 -463.07 -2.51 -12.70 16 18 C 0.54 9.90 5.84 87.65 0.51 10.42 16 19 O -0.58 -16.04 16.57 -3.04 -0.05 -16.09 16 20 C -0.18 -2.17 5.87 -11.61 -0.07 -2.23 16 21 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 22 C -0.14 -1.62 9.52 30.51 0.29 -1.33 16 23 C -0.10 -1.05 2.03 -52.21 -0.11 -1.15 16 24 C -0.11 -0.78 5.92 30.79 0.18 -0.60 16 25 C 0.05 0.48 6.85 72.09 0.49 0.97 16 26 O -0.40 -6.25 10.69 -148.98 -1.59 -7.84 16 27 C 0.06 0.89 6.84 72.09 0.49 1.39 16 28 C -0.12 -1.67 5.58 30.79 0.17 -1.50 16 29 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 31 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.35 10.68 8.43 -89.69 -0.76 9.93 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.41 3.97 8.18 -92.71 -0.76 3.21 16 41 H 0.09 1.40 7.91 -2.39 -0.02 1.38 16 42 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 0.29 8.08 -2.38 -0.02 0.28 16 44 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.06 0.70 7.72 -2.39 -0.02 0.69 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.06 1.03 6.83 -2.39 -0.02 1.01 16 Total: -1.00 -74.34 411.01 -2.36 -76.70 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -1.28 Total: 39.28 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.61 Total: 14.16 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -7.03 Total: -116.67 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -1.69 Total: -58.30 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.34 -2.36 -76.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177581314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.483 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds