Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.88454 * 31.11944 * 14 13 12 16 16 C 1.55157 * 111.00420 * 267.19832 * 14 13 12 17 17 C 1.54317 * 102.94066 * 206.42226 * 16 14 13 18 18 N 1.47022 * 107.27219 * 22.19495 * 17 16 14 19 19 C 1.34780 * 125.64921 * 181.02512 * 18 17 16 20 20 O 1.21277 * 119.99944 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.99860 * 0.03549 * 19 18 17 22 22 C 1.53002 * 109.47197 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47419 * 180.02562 * 22 21 19 24 24 H 1.09003 * 110.45572 * 52.39362 * 23 22 21 25 25 C 1.54503 * 110.51154 * 175.00250 * 23 22 21 26 26 C 1.54480 * 104.06418 * 118.64294 * 25 23 22 27 27 O 1.44433 * 104.80239 * 23.97895 * 26 25 23 28 28 C 1.44426 * 105.27372 * 319.48641 * 27 26 25 29 29 C 1.47421 * 108.70356 * 1.05692 * 18 17 16 30 30 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 32 32 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 34 34 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 35 35 H 1.09003 * 110.71773 * 324.78193 * 16 14 13 36 36 H 1.09002 * 110.71827 * 88.05814 * 16 14 13 37 37 H 1.08992 * 109.88533 * 262.77267 * 17 16 14 38 38 H 1.09001 * 109.88280 * 141.60963 * 17 16 14 39 39 H 1.08993 * 109.47459 * 300.00432 * 21 19 18 40 40 H 1.09004 * 109.47196 * 60.00789 * 21 19 18 41 41 H 1.09002 * 109.47392 * 300.00747 * 22 21 19 42 42 H 1.09006 * 109.47119 * 60.00126 * 22 21 19 43 43 H 1.08999 * 110.51024 * 237.28714 * 25 23 22 44 44 H 1.08997 * 110.51622 * 359.86419 * 25 23 22 45 45 H 1.09000 * 110.37190 * 142.80571 * 26 25 23 46 46 H 1.08997 * 110.37691 * 265.14515 * 26 25 23 47 47 H 1.08994 * 110.37238 * 281.68157 * 28 27 26 48 48 H 1.08995 * 110.37081 * 159.33893 * 28 27 26 49 49 H 1.08995 * 110.36567 * 217.03483 * 29 18 17 50 50 H 1.08999 * 110.36872 * 94.71078 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 1.4979 -7.2708 0.0316 15 1 0.5461 -7.1994 -0.4948 16 6 1.2954 -7.7860 1.4811 17 6 1.2176 -9.3161 1.2963 18 7 1.8803 -9.6363 0.0236 19 6 2.0060 -10.8683 -0.5084 20 8 2.5752 -11.0156 -1.5691 21 6 1.4389 -12.0627 0.2147 22 6 1.7163 -13.3295 -0.5973 23 6 1.1400 -14.5420 0.1365 24 1 0.0920 -14.3744 0.3849 25 6 1.2960 -15.8180 -0.7207 26 6 2.1915 -16.7393 0.1369 27 8 1.9961 -16.2848 1.4939 28 6 1.9598 -14.8434 1.4108 29 6 2.3852 -8.3868 -0.5741 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0068 32 1 0.6167 -4.9161 0.9093 33 1 0.6173 -4.9251 -0.8706 34 1 2.8331 -5.9162 -0.7568 35 1 2.1450 -7.5160 2.1085 36 1 0.3664 -7.4005 1.9011 37 1 0.1753 -9.6328 1.2616 38 1 1.7317 -9.8153 2.1177 39 1 1.9074 -12.1501 1.1949 40 1 0.3630 -11.9369 0.3361 41 1 1.2482 -13.2423 -1.5778 42 1 2.7923 -13.4552 -0.7184 43 1 0.3253 -16.2825 -0.8941 44 1 1.7814 -15.5846 -1.6683 45 1 1.8752 -17.7775 0.0354 46 1 3.2364 -16.6300 -0.1531 47 1 2.9692 -14.4432 1.3160 48 1 1.4656 -14.4251 2.2876 49 1 2.2745 -8.4130 -1.6581 50 1 3.4291 -8.2310 -0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181935702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -123.416832 kcal Electronic energy + Delta-G solvation = -28525.280455 eV Core-core repulsion = 24358.852008 eV Total energy + Delta-G solvation = -4166.428447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48620 -39.80083 -38.49143 -37.72294 -34.91270 -34.80764 -33.82300 -31.54912 -31.24610 -30.66051 -29.43583 -28.61932 -26.27292 -24.90732 -23.84239 -23.47015 -22.69229 -20.77506 -20.66436 -19.48797 -19.20911 -17.92761 -17.43112 -17.01072 -16.74003 -16.12541 -16.10083 -15.90852 -15.49991 -15.26654 -14.98564 -14.61629 -14.37857 -14.07926 -13.74092 -13.66388 -13.58247 -13.26305 -13.11695 -13.03409 -12.73187 -12.49442 -12.41071 -11.97576 -11.90861 -11.77119 -11.71497 -11.50188 -11.40005 -11.27479 -11.14068 -11.09181 -10.96188 -10.87813 -10.36224 -10.25204 -10.23750 -10.07758 -9.54975 -8.90201 -8.52747 -8.19186 -7.99503 -6.44745 -3.85608 2.38150 2.64831 3.14545 3.25514 3.32782 3.51894 3.86690 4.01408 4.03478 4.06143 4.24911 4.25771 4.42220 4.48416 4.53854 4.58952 4.71196 4.77002 4.86128 4.90035 5.01563 5.03690 5.09734 5.14120 5.19570 5.23351 5.27978 5.28628 5.32398 5.36462 5.47691 5.49457 5.58475 5.65156 5.69507 5.76590 5.80257 5.84401 5.89804 5.98164 6.04982 6.23893 6.33098 7.09891 7.25307 7.52160 7.52904 7.90272 8.03282 8.57660 9.14989 9.50747 10.01820 10.72972 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.046200 B = 0.001431 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.918590 B =19556.007378 C =19684.574862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.656 5.656 14 C 0.072 3.928 15 H 0.061 0.939 16 C -0.123 4.123 17 C 0.101 3.899 18 N -0.618 5.618 19 C 0.527 3.473 20 O -0.542 6.542 21 C -0.137 4.137 22 C -0.096 4.096 23 C -0.123 4.123 24 H 0.085 0.915 25 C -0.152 4.152 26 C 0.043 3.957 27 O -0.378 6.378 28 C 0.046 3.954 29 C 0.104 3.896 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.354 0.646 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -29.295 2.024 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.289 5.289 14 C -0.039 4.039 15 H 0.079 0.921 16 C -0.162 4.162 17 C -0.023 4.023 18 N -0.352 5.352 19 C 0.316 3.684 20 O -0.419 6.419 21 C -0.177 4.177 22 C -0.133 4.133 23 C -0.142 4.142 24 H 0.104 0.896 25 C -0.190 4.190 26 C -0.033 4.033 27 O -0.297 6.297 28 C -0.031 4.031 29 C -0.019 4.019 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.096 0.904 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.282 -29.399 2.289 29.576 hybrid contribution -0.706 1.119 -0.984 1.649 sum -2.988 -28.280 1.306 28.467 Atomic orbital electron populations 1.69621 1.05952 1.28084 1.50614 1.25262 0.95633 0.99741 0.97261 0.85798 0.79740 0.81094 0.77713 1.19188 1.20761 1.20730 1.19764 0.93427 0.82200 1.47522 0.87828 1.41866 1.09202 1.04611 1.64276 1.19771 0.88385 0.84686 0.84634 1.90533 1.13718 1.87027 1.55394 1.21727 0.94257 0.90824 1.01289 1.60081 1.18503 0.99044 1.51280 1.22687 0.96068 0.89214 0.95908 0.92081 1.22729 1.03901 0.91979 0.97566 1.22129 0.97321 0.97186 0.85637 1.48444 1.57349 1.06405 1.23045 1.20379 0.79611 0.83015 0.85419 1.90719 1.43451 1.85054 1.22703 1.21695 1.02717 0.92834 1.00433 1.21424 1.02185 0.91006 0.98728 1.22606 1.00968 0.95098 0.95507 0.89623 1.23010 1.01129 0.95380 0.99492 1.23428 0.98970 0.99014 0.81923 1.89129 1.94036 1.19936 1.26575 1.23590 0.99574 0.81795 0.98122 1.22360 0.98705 0.82311 0.98544 0.91908 0.77465 0.89483 0.93682 0.82599 0.89063 0.90011 0.91325 0.91105 0.88856 0.88745 0.90599 0.90775 0.90565 0.90055 0.89149 0.92193 0.91947 0.89025 0.90408 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.03 16 10 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 11 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 12 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 13 N -0.66 -9.83 6.04 -105.73 -0.64 -10.46 16 14 C 0.07 0.82 3.38 -65.56 -0.22 0.60 16 15 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 16 C -0.12 -1.14 6.65 -24.90 -0.17 -1.31 16 17 C 0.10 0.74 6.49 -3.07 -0.02 0.72 16 18 N -0.62 -6.21 3.33 -170.54 -0.57 -6.78 16 19 C 0.53 5.63 7.85 -10.98 -0.09 5.55 16 20 O -0.54 -7.93 16.24 5.56 0.09 -7.84 16 21 C -0.14 -0.89 4.77 -27.88 -0.13 -1.02 16 22 C -0.10 -0.64 3.72 -26.73 -0.10 -0.74 16 23 C -0.12 -0.68 3.11 -89.05 -0.28 -0.96 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 C -0.15 -0.82 6.74 -25.17 -0.17 -0.99 16 26 C 0.04 0.26 7.63 37.93 0.29 0.55 16 27 O -0.38 -3.24 11.65 -35.23 -0.41 -3.65 16 28 C 0.05 0.29 6.51 37.94 0.25 0.53 16 29 C 0.10 1.19 6.31 -2.53 -0.02 1.17 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.35 5.57 8.14 -39.29 -0.32 5.25 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.46 7.63 -51.93 -0.40 0.07 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.41 7.73 -51.93 -0.40 0.01 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.38 7.74 -51.93 -0.40 -0.02 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -33.77 406.71 -9.18 -42.95 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.50 Total: 9.74 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.01 Total: 7.04 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.54 Total: -54.75 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.23 Total: -26.92 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.77 -9.18 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181935702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.468 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds