Wall clock time and date at job start Sat Apr 11 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.88454 * 31.11944 * 14 13 12 16 16 C 1.55157 * 111.00420 * 267.19832 * 14 13 12 17 17 C 1.54317 * 102.94066 * 206.42226 * 16 14 13 18 18 N 1.47022 * 107.27219 * 22.19495 * 17 16 14 19 19 C 1.34780 * 125.64921 * 181.02512 * 18 17 16 20 20 O 1.21277 * 119.99944 * 180.02562 * 19 18 17 21 21 C 1.50698 * 119.99860 * 0.03549 * 19 18 17 22 22 C 1.53002 * 109.47197 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47419 * 180.02562 * 22 21 19 24 24 H 1.09003 * 110.45572 * 52.39362 * 23 22 21 25 25 C 1.54503 * 110.51154 * 175.00250 * 23 22 21 26 26 C 1.54480 * 104.06418 * 118.64294 * 25 23 22 27 27 O 1.44433 * 104.80239 * 23.97895 * 26 25 23 28 28 C 1.44426 * 105.27372 * 319.48641 * 27 26 25 29 29 C 1.47421 * 108.70356 * 1.05692 * 18 17 16 30 30 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 32 32 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 34 34 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 35 35 H 1.09003 * 110.71773 * 324.78193 * 16 14 13 36 36 H 1.09002 * 110.71827 * 88.05814 * 16 14 13 37 37 H 1.08992 * 109.88533 * 262.77267 * 17 16 14 38 38 H 1.09001 * 109.88280 * 141.60963 * 17 16 14 39 39 H 1.08993 * 109.47459 * 300.00432 * 21 19 18 40 40 H 1.09004 * 109.47196 * 60.00789 * 21 19 18 41 41 H 1.09002 * 109.47392 * 300.00747 * 22 21 19 42 42 H 1.09006 * 109.47119 * 60.00126 * 22 21 19 43 43 H 1.08999 * 110.51024 * 237.28714 * 25 23 22 44 44 H 1.08997 * 110.51622 * 359.86419 * 25 23 22 45 45 H 1.09000 * 110.37190 * 142.80571 * 26 25 23 46 46 H 1.08997 * 110.37691 * 265.14515 * 26 25 23 47 47 H 1.08994 * 110.37238 * 281.68157 * 28 27 26 48 48 H 1.08995 * 110.37081 * 159.33893 * 28 27 26 49 49 H 1.08995 * 110.36567 * 217.03483 * 29 18 17 50 50 H 1.08999 * 110.36872 * 94.71078 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 1.4979 -7.2708 0.0316 15 1 0.5461 -7.1994 -0.4948 16 6 1.2954 -7.7860 1.4811 17 6 1.2176 -9.3161 1.2963 18 7 1.8803 -9.6363 0.0236 19 6 2.0060 -10.8683 -0.5084 20 8 2.5752 -11.0156 -1.5691 21 6 1.4389 -12.0627 0.2147 22 6 1.7163 -13.3295 -0.5973 23 6 1.1400 -14.5420 0.1365 24 1 0.0920 -14.3744 0.3849 25 6 1.2960 -15.8180 -0.7207 26 6 2.1915 -16.7393 0.1369 27 8 1.9961 -16.2848 1.4939 28 6 1.9598 -14.8434 1.4108 29 6 2.3852 -8.3868 -0.5741 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0068 32 1 0.6167 -4.9161 0.9093 33 1 0.6173 -4.9251 -0.8706 34 1 2.8331 -5.9162 -0.7568 35 1 2.1450 -7.5160 2.1085 36 1 0.3664 -7.4005 1.9011 37 1 0.1753 -9.6328 1.2616 38 1 1.7317 -9.8153 2.1177 39 1 1.9074 -12.1501 1.1949 40 1 0.3630 -11.9369 0.3361 41 1 1.2482 -13.2423 -1.5778 42 1 2.7923 -13.4552 -0.7184 43 1 0.3253 -16.2825 -0.8941 44 1 1.7814 -15.5846 -1.6683 45 1 1.8752 -17.7775 0.0354 46 1 3.2364 -16.6300 -0.1531 47 1 2.9692 -14.4432 1.3160 48 1 1.4656 -14.4251 2.2876 49 1 2.2745 -8.4130 -1.6581 50 1 3.4291 -8.2310 -0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181935702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:58 Heat of formation + Delta-G solvation = -148.733642 kcal Electronic energy + Delta-G solvation = -28526.378274 eV Core-core repulsion = 24358.852008 eV Total energy + Delta-G solvation = -4167.526266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25672 -40.38358 -40.10668 -38.80244 -36.21136 -35.56372 -35.46946 -33.27256 -32.20311 -31.41357 -30.18565 -29.34629 -27.74034 -25.96711 -25.11952 -24.12764 -23.23553 -21.62491 -21.20036 -21.09329 -20.13262 -19.88491 -18.22285 -17.88694 -17.55148 -17.26049 -16.86808 -16.73709 -16.50359 -16.33302 -16.14969 -15.94773 -15.60487 -15.26311 -14.93594 -14.60983 -14.44956 -14.17655 -14.01210 -13.85299 -13.64578 -13.50189 -13.47470 -13.18781 -13.10368 -12.85183 -12.52445 -12.46844 -12.39869 -12.36685 -12.19288 -12.11204 -11.86795 -11.72227 -11.60055 -11.51344 -11.39733 -10.93121 -10.74545 -10.35230 -10.01280 -9.70604 -9.41818 -8.46974 -5.95451 1.36698 1.42488 1.56258 1.59468 1.87436 2.05325 2.29699 2.91994 3.06683 3.20665 3.31104 3.52670 3.59463 3.69232 3.75081 3.83013 4.01530 4.08351 4.14854 4.24054 4.28238 4.30818 4.34821 4.37981 4.44524 4.48837 4.56139 4.61063 4.65491 4.71226 4.78276 4.81749 4.85531 4.87155 4.92030 5.02942 5.04821 5.10516 5.19228 5.22084 5.29704 5.37160 5.41633 5.86933 5.87917 6.08597 6.28713 6.49964 6.60121 7.10901 7.12971 7.56373 8.11801 8.70510 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.046200 B = 0.001431 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.918590 B =19556.007378 C =19684.574862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.068 3.932 13 N -0.669 5.669 14 C 0.076 3.924 15 H 0.073 0.927 16 C -0.120 4.120 17 C 0.102 3.898 18 N -0.618 5.618 19 C 0.519 3.481 20 O -0.592 6.592 21 C -0.127 4.127 22 C -0.089 4.089 23 C -0.114 4.114 24 H 0.100 0.900 25 C -0.153 4.153 26 C 0.038 3.962 27 O -0.403 6.403 28 C 0.041 3.959 29 C 0.105 3.895 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.345 0.655 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.107 0.893 49 H 0.063 0.937 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -30.148 3.262 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.064 4.064 13 N -0.302 5.302 14 C -0.034 4.034 15 H 0.091 0.909 16 C -0.159 4.159 17 C -0.020 4.020 18 N -0.352 5.352 19 C 0.310 3.690 20 O -0.473 6.473 21 C -0.167 4.167 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.118 0.882 25 C -0.191 4.191 26 C -0.039 4.039 27 O -0.323 6.323 28 C -0.035 4.035 29 C -0.019 4.019 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.125 0.875 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.302 -30.266 3.559 30.777 hybrid contribution -0.051 1.339 -1.384 1.926 sum -4.353 -28.927 2.175 29.334 Atomic orbital electron populations 1.69672 1.06761 1.29219 1.50341 1.25999 0.96521 1.02298 0.96251 0.84893 0.78035 0.77230 0.78324 1.19900 1.19657 1.19564 1.19700 0.92696 0.84093 1.49904 0.90415 1.41923 1.09354 1.04673 1.65000 1.20894 0.88248 0.86221 0.82210 1.90503 1.15957 1.87971 1.56661 1.21579 0.93813 0.87666 1.03363 1.60110 1.18713 1.00183 1.51161 1.22726 0.95821 0.87131 0.97761 0.90915 1.22729 1.04152 0.93376 0.95594 1.22323 0.99030 0.95864 0.84772 1.48567 1.57056 1.05739 1.23817 1.21194 0.78832 0.83958 0.84992 1.90698 1.45749 1.85772 1.25077 1.21744 1.04191 0.90253 1.00482 1.21327 1.01026 0.91915 0.98491 1.22542 1.01460 0.94334 0.94962 0.88191 1.23028 1.01407 0.95309 0.99318 1.23559 0.99251 0.99788 0.81260 1.89100 1.94160 1.21197 1.27829 1.23724 0.99791 0.80923 0.99050 1.22186 0.98172 0.83596 0.97919 0.91298 0.76890 0.87142 0.91476 0.83589 0.90542 0.88261 0.88405 0.89021 0.86653 0.86031 0.91853 0.92554 0.89718 0.90126 0.88168 0.92235 0.92263 0.87468 0.91830 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 2 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 3 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.74 5.29 -306.98 -1.62 -30.36 16 10 C 0.44 20.22 7.82 87.66 0.69 20.90 16 11 O -0.62 -34.19 15.78 -3.07 -0.05 -34.24 16 12 C 0.07 2.17 6.03 85.56 0.52 2.68 16 13 N -0.67 -19.64 6.04 -488.42 -2.95 -22.59 16 14 C 0.08 1.60 3.38 46.31 0.16 1.75 16 15 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 16 C -0.12 -1.89 6.65 31.78 0.21 -1.68 16 17 C 0.10 1.14 6.49 86.73 0.56 1.70 16 18 N -0.62 -11.36 3.33 -811.84 -2.70 -14.06 16 19 C 0.52 10.48 7.85 87.66 0.69 11.16 16 20 O -0.59 -17.65 16.24 -3.02 -0.05 -17.69 16 21 C -0.13 -1.31 4.77 29.85 0.14 -1.17 16 22 C -0.09 -1.09 3.72 30.59 0.11 -0.98 16 23 C -0.11 -1.03 3.11 -9.78 -0.03 -1.06 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 C -0.15 -1.44 6.74 31.61 0.21 -1.23 16 26 C 0.04 0.43 7.63 72.49 0.55 0.98 16 27 O -0.40 -6.43 11.65 -148.98 -1.74 -8.17 16 28 C 0.04 0.44 6.51 72.49 0.47 0.91 16 29 C 0.11 2.38 6.31 86.85 0.55 2.93 16 30 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 32 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.07 1.87 8.09 -2.39 -0.02 1.86 16 34 H 0.34 11.08 8.14 -89.70 -0.73 10.35 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.12 0.72 7.63 -2.39 -0.02 0.70 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.06 0.89 7.92 -2.38 -0.02 0.87 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.76 7.73 -2.39 -0.02 0.75 16 45 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.65 7.74 -2.39 -0.02 0.63 16 48 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 50 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -75.61 406.71 -1.20 -76.81 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.52 Total: 35.43 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.11 Total: 18.80 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -6.99 Total: -115.52 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -1.83 Total: -60.10 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -75.61 -1.20 -76.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181935702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.923 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds