Wall clock time and date at job start Sat Apr 11 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00302 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00112 * 3 2 1 7 7 C 1.38945 * 119.99901 * 180.27968 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.72325 * 7 2 1 9 9 N 1.37105 * 120.00017 * 359.71836 * 7 2 1 10 10 C 1.34777 * 120.00244 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99983 * 180.02562 * 13 12 10 15 15 H 1.08992 * 110.64065 * 36.68418 * 14 13 12 16 16 C 1.55157 * 110.71641 * 273.54053 * 14 13 12 17 17 C 1.54912 * 101.58099 * 206.13275 * 16 14 13 18 18 N 1.47423 * 104.82926 * 37.01494 * 17 16 14 19 19 C 1.34780 * 125.64761 * 155.91474 * 18 17 16 20 20 O 1.21280 * 119.99790 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00136 * 359.97438 * 19 18 17 22 22 C 1.52994 * 109.47333 * 179.97438 * 21 19 18 23 23 H 1.09004 * 109.48177 * 54.97888 * 22 21 19 24 24 C 1.53090 * 109.48085 * 174.99776 * 22 21 19 25 25 C 1.53177 * 109.16350 * 177.58876 * 24 22 21 26 26 C 1.53178 * 109.04045 * 303.02427 * 25 24 22 27 27 C 1.53092 * 109.16149 * 56.97582 * 26 25 24 28 28 O 1.42899 * 109.48165 * 294.94164 * 22 21 19 29 29 C 1.47022 * 108.70540 * 335.86747 * 18 17 16 30 30 H 0.97000 * 120.00371 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00104 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47048 * 299.99798 * 12 10 9 33 33 H 1.08993 * 109.47202 * 60.00332 * 12 10 9 34 34 H 1.00902 * 111.00188 * 303.95286 * 13 12 10 35 35 H 1.08994 * 111.00701 * 324.21322 * 16 14 13 36 36 H 1.09001 * 111.00076 * 88.02485 * 16 14 13 37 37 H 1.09004 * 110.36377 * 155.84984 * 17 16 14 38 38 H 1.09000 * 110.36979 * 278.06359 * 17 16 14 39 39 H 1.09007 * 109.46701 * 300.00021 * 21 19 18 40 40 H 1.09002 * 109.46927 * 59.99670 * 21 19 18 41 41 H 1.09003 * 109.52310 * 297.49822 * 24 22 21 42 42 H 1.09003 * 109.51956 * 57.68752 * 24 22 21 43 43 H 1.09008 * 109.54227 * 62.88774 * 25 24 22 44 44 H 1.09000 * 109.54504 * 183.06200 * 25 24 22 45 45 H 1.08993 * 109.52554 * 176.88267 * 26 25 24 46 46 H 1.08998 * 109.51846 * 297.01190 * 26 25 24 47 47 H 1.08994 * 109.48137 * 62.37959 * 27 26 25 48 48 H 1.09000 * 109.48010 * 182.40817 * 27 26 25 49 49 H 1.08991 * 109.88558 * 241.64424 * 29 18 17 50 50 H 1.09005 * 109.88334 * 120.47742 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0059 8 1 3.0888 -1.2034 -0.0104 9 7 1.3233 -2.3907 -0.0058 10 6 1.9971 -3.5579 -0.0121 11 8 3.2101 -3.5579 -0.0172 12 6 1.2436 -4.8629 -0.0126 13 7 2.1982 -5.9795 -0.0192 14 6 1.4979 -7.2708 -0.0206 15 1 0.5935 -7.2168 -0.6265 16 6 1.1625 -7.7148 1.4278 17 6 1.0989 -9.2550 1.2741 18 7 2.1625 -9.5819 0.3071 19 6 2.7871 -10.7714 0.1987 20 8 3.6512 -10.9285 -0.6377 21 6 2.4117 -11.9060 1.1167 22 6 3.2635 -13.1331 0.7857 23 1 4.3193 -12.8663 0.8334 24 6 2.9717 -14.2449 1.7968 25 6 3.7827 -15.4896 1.4235 26 6 3.4344 -15.9015 -0.0102 27 6 3.7083 -14.7256 -0.9514 28 8 2.9467 -13.5923 -0.5299 29 6 2.4283 -8.3961 -0.5203 30 1 -0.4851 -0.8400 0.0004 31 1 0.3533 -2.3907 -0.0021 32 1 0.6208 -4.9232 0.8799 33 1 0.6132 -4.9181 -0.9000 34 1 2.8300 -5.9104 -0.8029 35 1 1.9535 -7.4235 2.1188 36 1 0.2006 -7.3134 1.7467 37 1 1.2936 -9.7400 2.2306 38 1 0.1259 -9.5578 0.8872 39 1 2.5870 -11.6097 2.1510 40 1 1.3576 -12.1488 0.9820 41 1 3.2541 -13.9122 2.7957 42 1 1.9084 -14.4840 1.7786 43 1 4.8473 -15.2645 1.4897 44 1 3.5387 -16.3025 2.1074 45 1 4.0476 -16.7534 -0.3036 46 1 2.3807 -16.1751 -0.0646 47 1 4.7698 -14.4798 -0.9267 48 1 3.4219 -14.9987 -1.9671 49 1 2.2137 -8.6176 -1.5657 50 1 3.4695 -8.0927 -0.4097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181957347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:03 Heat of formation + Delta-G solvation = -121.688813 kcal Electronic energy + Delta-G solvation = -29043.572837 eV Core-core repulsion = 24877.219323 eV Total energy + Delta-G solvation = -4166.353514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.48108 -39.49465 -38.49357 -37.60315 -34.90468 -34.08858 -33.95097 -33.21203 -31.16793 -30.70453 -29.48542 -28.29662 -25.98176 -24.79355 -23.89807 -23.56257 -22.62687 -20.67711 -20.60005 -19.76180 -19.34864 -17.92628 -17.28751 -16.97283 -16.60208 -16.48692 -16.16483 -15.51736 -15.28604 -15.05443 -14.89765 -14.73698 -14.41617 -13.97378 -13.87593 -13.74142 -13.61689 -13.25658 -13.06570 -13.04979 -12.69877 -12.53813 -12.51196 -12.15353 -11.86684 -11.67061 -11.62406 -11.48042 -11.27694 -11.18957 -11.16105 -11.02435 -10.91157 -10.68130 -10.20815 -9.95887 -9.87485 -9.68666 -9.55800 -8.81315 -8.55827 -8.22789 -8.04533 -6.76427 -3.89717 2.52781 2.71900 3.30736 3.34972 3.45161 3.55190 3.82583 4.01919 4.07685 4.28730 4.32360 4.40387 4.42429 4.43588 4.52739 4.69086 4.79842 4.84367 4.90790 4.98560 5.01920 5.04750 5.08744 5.19952 5.21650 5.27324 5.29469 5.33020 5.38346 5.47608 5.51144 5.55305 5.60659 5.65060 5.68547 5.71557 5.77665 5.81236 5.86884 5.96143 6.04708 6.13134 6.97535 7.05747 7.33088 7.49060 7.79558 8.04685 8.07081 8.58626 8.78458 9.46127 9.86011 10.66977 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.001553 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.731241 B =18021.229605 C =18241.145744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.383 4.383 8 H 0.099 0.901 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.576 6.576 12 C 0.052 3.948 13 N -0.657 5.657 14 C 0.074 3.926 15 H 0.059 0.941 16 C -0.124 4.124 17 C 0.099 3.901 18 N -0.619 5.619 19 C 0.530 3.470 20 O -0.528 6.528 21 C -0.130 4.130 22 C 0.106 3.894 23 H 0.066 0.934 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.158 4.158 27 C 0.063 3.937 28 O -0.368 6.368 29 C 0.109 3.891 30 H 0.261 0.739 31 H 0.376 0.624 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.353 0.647 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -30.487 4.144 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.211 4.211 3 Si 0.917 3.083 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.512 4.512 8 H 0.117 0.883 9 N -0.213 5.213 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.081 4.081 13 N -0.290 5.290 14 C -0.037 4.037 15 H 0.077 0.923 16 C -0.163 4.163 17 C -0.024 4.024 18 N -0.355 5.355 19 C 0.318 3.682 20 O -0.404 6.404 21 C -0.169 4.169 22 C 0.048 3.952 23 H 0.084 0.916 24 C -0.189 4.189 25 C -0.160 4.160 26 C -0.195 4.195 27 C -0.014 4.014 28 O -0.286 6.286 29 C -0.014 4.014 30 H 0.072 0.928 31 H 0.209 0.791 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.174 0.826 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.085 0.915 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.288 -28.865 4.228 29.174 hybrid contribution -0.729 -1.873 -0.670 2.118 sum -0.441 -30.737 3.558 30.946 Atomic orbital electron populations 1.70906 1.06512 1.29357 1.47214 1.26510 0.96537 1.02632 0.95449 0.83131 0.74433 0.73615 0.77093 1.20412 1.20988 1.21013 1.20543 0.94700 0.83863 1.52101 0.88309 1.41931 1.08175 1.05544 1.65670 1.19704 0.88420 0.84440 0.84627 1.90540 1.13657 1.86881 1.54845 1.21708 0.94314 0.90863 1.01222 1.60158 1.18587 0.99077 1.51197 1.22555 0.95503 0.89197 0.96486 0.92298 1.22882 1.03262 0.92770 0.97383 1.22390 0.90761 0.96569 0.92691 1.48419 1.38935 1.11494 1.36612 1.20172 0.81261 0.81962 0.84777 1.90730 1.31573 1.81615 1.36445 1.21712 1.02627 0.92649 0.99945 1.21761 0.98618 0.91598 0.83270 0.91595 1.22235 1.01410 0.95911 0.99345 1.21573 1.00161 0.97626 0.96616 1.22217 1.02575 0.98890 0.95844 1.22512 0.95704 0.85253 0.97896 1.87975 1.62660 1.46917 1.31074 1.21978 1.00652 0.84241 0.94508 0.92792 0.79150 0.89542 0.93738 0.82597 0.89164 0.89941 0.90429 0.91241 0.87530 0.88102 0.90697 0.90887 0.91728 0.91403 0.90975 0.91119 0.93175 0.89020 0.91450 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 13.68 55.50 0.76 -24.31 16 2 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 3 Si 1.09 24.22 29.92 -169.99 -5.09 19.13 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.38 -10.75 9.68 -14.93 -0.14 -10.89 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.58 -14.33 5.28 -10.96 -0.06 -14.39 16 10 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 11 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 12 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 13 N -0.66 -10.16 5.93 -106.06 -0.63 -10.79 16 14 C 0.07 0.86 3.24 -65.88 -0.21 0.64 16 15 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 16 C -0.12 -1.21 6.71 -24.58 -0.16 -1.37 16 17 C 0.10 0.79 6.69 -2.53 -0.02 0.77 16 18 N -0.62 -6.87 3.33 -170.52 -0.57 -7.44 16 19 C 0.53 6.47 7.73 -10.98 -0.08 6.39 16 20 O -0.53 -8.63 15.75 -8.78 -0.14 -8.77 16 21 C -0.13 -1.05 4.42 -27.89 -0.12 -1.17 16 22 C 0.11 0.94 2.19 -26.69 -0.06 0.88 16 23 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 24 C -0.15 -0.93 5.42 -26.59 -0.14 -1.07 16 25 C -0.12 -0.70 6.03 -26.55 -0.16 -0.86 16 26 C -0.16 -0.97 6.14 -26.59 -0.16 -1.13 16 27 C 0.06 0.53 6.84 37.21 0.25 0.78 16 28 O -0.37 -4.07 9.64 -49.57 -0.48 -4.55 16 29 C 0.11 1.34 6.39 -3.06 -0.02 1.32 16 30 H 0.26 6.95 6.78 -40.82 -0.28 6.68 16 31 H 0.38 8.58 6.73 -40.82 -0.27 8.31 16 32 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.35 5.79 8.15 -39.29 -0.32 5.47 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.46 7.48 -51.93 -0.39 0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.11 0.59 7.85 -51.92 -0.41 0.19 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -35.85 401.47 -9.72 -45.57 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -8.41 Total: 10.09 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.25 Total: 5.01 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.49 Total: -56.92 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.53 Total: -28.93 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.85 -9.72 -45.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181957347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.119 kcal (2) G-P(sol) polarization free energy of solvation -35.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds