Wall clock time and date at job start Sat Apr 11 2020 05:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00302 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00112 * 3 2 1 7 7 C 1.38945 * 119.99901 * 180.27968 * 2 1 3 8 8 H 1.07998 * 120.00275 * 179.72325 * 7 2 1 9 9 N 1.37105 * 120.00017 * 359.71836 * 7 2 1 10 10 C 1.34777 * 120.00244 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99685 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00076 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.46901 * 110.99983 * 180.02562 * 13 12 10 15 15 H 1.08992 * 110.64065 * 36.68418 * 14 13 12 16 16 C 1.55157 * 110.71641 * 273.54053 * 14 13 12 17 17 C 1.54912 * 101.58099 * 206.13275 * 16 14 13 18 18 N 1.47423 * 104.82926 * 37.01494 * 17 16 14 19 19 C 1.34780 * 125.64761 * 155.91474 * 18 17 16 20 20 O 1.21280 * 119.99790 * 179.97438 * 19 18 17 21 21 C 1.50703 * 120.00136 * 359.97438 * 19 18 17 22 22 C 1.52994 * 109.47333 * 179.97438 * 21 19 18 23 23 H 1.09004 * 109.48177 * 54.97888 * 22 21 19 24 24 C 1.53090 * 109.48085 * 174.99776 * 22 21 19 25 25 C 1.53177 * 109.16350 * 177.58876 * 24 22 21 26 26 C 1.53178 * 109.04045 * 303.02427 * 25 24 22 27 27 C 1.53092 * 109.16149 * 56.97582 * 26 25 24 28 28 O 1.42899 * 109.48165 * 294.94164 * 22 21 19 29 29 C 1.47022 * 108.70540 * 335.86747 * 18 17 16 30 30 H 0.97000 * 120.00371 * 180.02562 * 1 2 3 31 31 H 0.97004 * 120.00104 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47048 * 299.99798 * 12 10 9 33 33 H 1.08993 * 109.47202 * 60.00332 * 12 10 9 34 34 H 1.00902 * 111.00188 * 303.95286 * 13 12 10 35 35 H 1.08994 * 111.00701 * 324.21322 * 16 14 13 36 36 H 1.09001 * 111.00076 * 88.02485 * 16 14 13 37 37 H 1.09004 * 110.36377 * 155.84984 * 17 16 14 38 38 H 1.09000 * 110.36979 * 278.06359 * 17 16 14 39 39 H 1.09007 * 109.46701 * 300.00021 * 21 19 18 40 40 H 1.09002 * 109.46927 * 59.99670 * 21 19 18 41 41 H 1.09003 * 109.52310 * 297.49822 * 24 22 21 42 42 H 1.09003 * 109.51956 * 57.68752 * 24 22 21 43 43 H 1.09008 * 109.54227 * 62.88774 * 25 24 22 44 44 H 1.09000 * 109.54504 * 183.06200 * 25 24 22 45 45 H 1.08993 * 109.52554 * 176.88267 * 26 25 24 46 46 H 1.08998 * 109.51846 * 297.01190 * 26 25 24 47 47 H 1.08994 * 109.48137 * 62.37959 * 27 26 25 48 48 H 1.09000 * 109.48010 * 182.40817 * 27 26 25 49 49 H 1.08991 * 109.88558 * 241.64424 * 29 18 17 50 50 H 1.09005 * 109.88334 * 120.47742 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 0.0006 5 1 3.1019 1.6964 1.2125 6 1 3.1018 1.6964 -1.2125 7 6 2.0088 -1.2033 -0.0059 8 1 3.0888 -1.2034 -0.0104 9 7 1.3233 -2.3907 -0.0058 10 6 1.9971 -3.5579 -0.0121 11 8 3.2101 -3.5579 -0.0172 12 6 1.2436 -4.8629 -0.0126 13 7 2.1982 -5.9795 -0.0192 14 6 1.4979 -7.2708 -0.0206 15 1 0.5935 -7.2168 -0.6265 16 6 1.1625 -7.7148 1.4278 17 6 1.0989 -9.2550 1.2741 18 7 2.1625 -9.5819 0.3071 19 6 2.7871 -10.7714 0.1987 20 8 3.6512 -10.9285 -0.6377 21 6 2.4117 -11.9060 1.1167 22 6 3.2635 -13.1331 0.7857 23 1 4.3193 -12.8663 0.8334 24 6 2.9717 -14.2449 1.7968 25 6 3.7827 -15.4896 1.4235 26 6 3.4344 -15.9015 -0.0102 27 6 3.7083 -14.7256 -0.9514 28 8 2.9467 -13.5923 -0.5299 29 6 2.4283 -8.3961 -0.5203 30 1 -0.4851 -0.8400 0.0004 31 1 0.3533 -2.3907 -0.0021 32 1 0.6208 -4.9232 0.8799 33 1 0.6132 -4.9181 -0.9000 34 1 2.8300 -5.9104 -0.8029 35 1 1.9535 -7.4235 2.1188 36 1 0.2006 -7.3134 1.7467 37 1 1.2936 -9.7400 2.2306 38 1 0.1259 -9.5578 0.8872 39 1 2.5870 -11.6097 2.1510 40 1 1.3576 -12.1488 0.9820 41 1 3.2541 -13.9122 2.7957 42 1 1.9084 -14.4840 1.7786 43 1 4.8473 -15.2645 1.4897 44 1 3.5387 -16.3025 2.1074 45 1 4.0476 -16.7534 -0.3036 46 1 2.3807 -16.1751 -0.0646 47 1 4.7698 -14.4798 -0.9267 48 1 3.4219 -14.9987 -1.9671 49 1 2.2137 -8.6176 -1.5657 50 1 3.4695 -8.0927 -0.4097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181957347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:02 Heat of formation + Delta-G solvation = -148.055524 kcal Electronic energy + Delta-G solvation = -29044.716183 eV Core-core repulsion = 24877.219323 eV Total energy + Delta-G solvation = -4167.496860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32763 -40.42532 -40.04826 -38.68758 -36.53316 -35.67646 -34.51815 -33.88682 -33.14548 -31.71626 -30.32659 -29.14700 -27.46435 -25.76176 -25.24950 -24.40799 -23.29693 -21.58754 -21.53404 -21.17452 -20.23047 -19.96635 -18.34393 -17.94951 -17.76834 -17.38092 -16.88721 -16.78725 -16.61554 -16.31190 -15.78961 -15.55777 -15.49961 -15.34476 -15.30659 -14.73890 -14.55564 -14.28493 -14.13554 -13.84920 -13.60561 -13.42915 -13.34890 -13.24524 -13.18632 -12.89918 -12.76390 -12.54936 -12.18533 -12.14681 -11.96842 -11.91550 -11.89150 -11.86308 -11.65178 -11.52662 -11.27944 -10.91227 -10.42428 -10.32675 -10.10896 -9.71716 -9.46898 -8.92373 -6.06522 1.52748 1.55172 1.63413 1.82881 1.87080 2.00827 2.40976 2.80374 2.83342 3.16849 3.28047 3.39188 3.65938 3.68878 3.73204 3.93890 3.97311 4.08025 4.11148 4.11644 4.21307 4.27701 4.29731 4.34919 4.39491 4.46967 4.51905 4.52502 4.63719 4.69661 4.72318 4.77019 4.81002 4.88994 4.97003 4.99540 5.07965 5.13387 5.17558 5.21364 5.28936 5.39328 5.59461 5.91957 5.98438 6.20983 6.32808 6.50601 6.58233 6.74676 7.14943 7.44282 7.92971 8.55536 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.001553 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.731241 B =18021.229605 C =18241.145744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.040 4.040 3 Si 1.133 2.867 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.413 4.413 8 H 0.071 0.929 9 N -0.585 5.585 10 C 0.440 3.560 11 O -0.620 6.620 12 C 0.069 3.931 13 N -0.673 5.673 14 C 0.078 3.922 15 H 0.079 0.921 16 C -0.121 4.121 17 C 0.101 3.899 18 N -0.620 5.620 19 C 0.520 3.480 20 O -0.583 6.583 21 C -0.121 4.121 22 C 0.100 3.900 23 H 0.042 0.958 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.151 4.151 27 C 0.056 3.944 28 O -0.396 6.396 29 C 0.110 3.890 30 H 0.260 0.740 31 H 0.386 0.614 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.344 0.656 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.959 -31.984 5.816 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.238 4.238 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.089 0.911 9 N -0.224 5.224 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.064 4.064 13 N -0.306 5.306 14 C -0.032 4.032 15 H 0.096 0.904 16 C -0.160 4.160 17 C -0.021 4.021 18 N -0.354 5.354 19 C 0.310 3.690 20 O -0.462 6.462 21 C -0.160 4.160 22 C 0.042 3.958 23 H 0.060 0.940 24 C -0.181 4.181 25 C -0.163 4.163 26 C -0.189 4.189 27 C -0.021 4.021 28 O -0.316 6.316 29 C -0.014 4.014 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.900 -30.391 5.932 31.023 hybrid contribution -0.024 -1.468 -1.229 1.915 sum -1.924 -31.859 4.703 32.262 Atomic orbital electron populations 1.70971 1.06916 1.29549 1.47998 1.27774 0.96700 1.05209 0.94155 0.82640 0.73827 0.70441 0.77843 1.19625 1.19893 1.19997 1.20520 0.93895 0.85783 1.53986 0.91062 1.41969 1.08645 1.05411 1.66392 1.20916 0.88280 0.86087 0.81944 1.90513 1.16080 1.87894 1.56143 1.21576 0.93800 0.87394 1.03604 1.60185 1.18958 1.00358 1.51098 1.22622 0.95309 0.86807 0.98473 0.90358 1.22895 1.03681 0.94164 0.95224 1.22638 0.90722 0.95352 0.93384 1.48564 1.39372 1.10735 1.36761 1.21026 0.80390 0.82903 0.84646 1.90703 1.34025 1.82633 1.38876 1.21809 1.03464 0.90404 1.00335 1.21893 0.97561 0.93020 0.83364 0.94020 1.22194 1.01955 0.94835 0.99137 1.21624 0.99931 0.98123 0.96577 1.22166 1.02949 0.98125 0.95647 1.22641 0.94914 0.85686 0.98847 1.87925 1.63167 1.47956 1.32519 1.21833 0.99396 0.85412 0.94742 0.92894 0.77986 0.86936 0.91118 0.83730 0.91019 0.87696 0.87539 0.88785 0.84363 0.86011 0.88885 0.90006 0.92206 0.89698 0.89684 0.90872 0.94258 0.88822 0.92107 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.50 13.68 21.66 0.30 -50.20 16 2 C -0.04 -2.16 5.50 84.92 0.47 -1.69 16 3 Si 1.13 48.46 29.92 68.60 2.05 50.51 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.41 -23.57 9.68 84.04 0.81 -22.75 16 8 H 0.07 4.40 7.16 -2.91 -0.02 4.38 16 9 N -0.58 -29.31 5.28 -306.98 -1.62 -30.93 16 10 C 0.44 20.56 7.82 87.66 0.69 21.25 16 11 O -0.62 -34.72 15.78 -3.08 -0.05 -34.77 16 12 C 0.07 2.17 6.02 85.56 0.52 2.69 16 13 N -0.67 -20.36 5.93 -489.46 -2.90 -23.26 16 14 C 0.08 1.68 3.24 46.10 0.15 1.83 16 15 H 0.08 1.44 7.89 -2.39 -0.02 1.42 16 16 C -0.12 -1.99 6.71 31.99 0.21 -1.77 16 17 C 0.10 1.23 6.69 86.86 0.58 1.81 16 18 N -0.62 -12.93 3.33 -811.78 -2.70 -15.63 16 19 C 0.52 12.46 7.73 87.66 0.68 13.13 16 20 O -0.58 -19.96 15.75 10.68 0.17 -19.79 16 21 C -0.12 -1.69 4.42 29.85 0.13 -1.56 16 22 C 0.10 1.70 2.19 30.62 0.07 1.76 16 23 H 0.04 0.88 7.95 -2.38 -0.02 0.87 16 24 C -0.14 -1.42 5.42 30.68 0.17 -1.25 16 25 C -0.13 -1.21 6.03 30.71 0.19 -1.03 16 26 C -0.15 -1.68 6.14 30.68 0.19 -1.49 16 27 C 0.06 0.95 6.84 72.01 0.49 1.44 16 28 O -0.40 -8.82 9.64 -135.27 -1.30 -10.12 16 29 C 0.11 2.71 6.39 86.73 0.55 3.26 16 30 H 0.26 13.79 6.78 -92.71 -0.63 13.16 16 31 H 0.39 17.50 6.73 -92.71 -0.62 16.87 16 32 H 0.11 3.04 8.13 -2.39 -0.02 3.02 16 33 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.34 11.49 8.15 -89.69 -0.73 10.76 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 0.74 7.48 -2.38 -0.02 0.72 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.14 1.02 7.85 -2.38 -0.02 1.00 16 40 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 1.57 7.97 -2.38 -0.02 1.55 16 Total: -1.00 -81.78 401.47 -0.44 -82.22 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.27 Total: 36.36 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 5.89 Total: 15.62 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.93 Total: -120.03 kcal Atomic # 8 Polarization: -63.50 SS G_CDS: -1.18 Total: -64.69 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -81.78 -0.44 -82.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181957347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.837 kcal (2) G-P(sol) polarization free energy of solvation -81.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds