Wall clock time and date at job start Sat Apr 11 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00135 * 2 1 4 4 H 1.48507 * 109.46894 * 240.00173 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47244 * 120.00094 * 3 2 1 7 7 C 1.38950 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00396 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00149 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00289 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47274 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00019 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.64405 * 31.86368 * 14 13 12 16 16 C 1.55161 * 110.72012 * 268.52535 * 14 13 12 17 17 C 1.55137 * 101.48526 * 205.97068 * 16 14 13 18 18 N 1.47423 * 104.71983 * 37.29517 * 17 16 14 19 19 C 1.34777 * 125.64829 * 155.82193 * 18 17 16 20 20 O 1.21283 * 120.00463 * 179.69258 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.41380 * 19 18 17 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 H 1.09000 * 109.48102 * 305.02372 * 22 21 19 24 24 C 1.53085 * 109.48107 * 184.99779 * 22 21 19 25 25 C 1.53181 * 109.16476 * 182.40570 * 24 22 21 26 26 C 1.53179 * 109.03221 * 56.98290 * 25 24 22 27 27 C 1.53090 * 109.16242 * 303.01848 * 26 25 24 28 28 O 1.42901 * 109.41667 * 57.61184 * 27 26 25 29 29 C 1.47019 * 108.70731 * 335.55081 * 18 17 16 30 30 H 0.96999 * 119.99618 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00310 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46948 * 60.00306 * 12 10 9 33 33 H 1.08995 * 109.47385 * 300.00576 * 12 10 9 34 34 H 1.00908 * 110.99815 * 56.05245 * 13 12 10 35 35 H 1.08994 * 111.00643 * 324.20848 * 16 14 13 36 36 H 1.08997 * 111.00702 * 88.06355 * 16 14 13 37 37 H 1.09007 * 110.49426 * 278.45664 * 17 16 14 38 38 H 1.08993 * 110.34231 * 156.05913 * 17 16 14 39 39 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 40 40 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 41 41 H 1.09004 * 109.52820 * 302.31455 * 24 22 21 42 42 H 1.09007 * 109.52611 * 62.50430 * 24 22 21 43 43 H 1.09001 * 109.54619 * 176.84671 * 25 24 22 44 44 H 1.09001 * 109.54463 * 297.03117 * 25 24 22 45 45 H 1.08997 * 109.52252 * 62.92805 * 26 25 24 46 46 H 1.09000 * 109.52247 * 183.11790 * 26 25 24 47 47 H 1.09006 * 109.48034 * 177.59227 * 27 26 25 48 48 H 1.08997 * 109.48573 * 297.61646 * 27 26 25 49 49 H 1.09003 * 109.88210 * 120.70469 * 29 18 17 50 50 H 1.08996 * 109.88947 * 241.87267 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1983 -5.9795 0.0024 14 6 1.4980 -7.2708 0.0046 15 1 0.5522 -7.1960 -0.5321 16 6 1.2719 -7.7701 1.4562 17 6 1.1905 -9.3050 1.2458 18 7 2.1820 -9.5918 0.1931 19 6 2.7950 -10.7753 -0.0071 20 8 3.5933 -10.8994 -0.9117 21 6 2.4931 -11.9426 0.8969 22 6 3.3205 -13.1533 0.4601 23 1 3.1341 -13.3599 -0.5938 24 6 2.9234 -14.3719 1.2973 25 6 3.7974 -15.5642 0.8958 26 6 5.2708 -15.1878 1.0796 27 6 5.5772 -13.9376 0.2508 28 8 4.7091 -12.8763 0.6533 29 6 2.3865 -8.3749 -0.6062 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3906 0.0016 32 1 0.6161 -4.9213 -0.8859 33 1 0.6181 -4.9201 0.8940 34 1 2.8344 -5.9121 0.7828 35 1 2.1130 -7.5042 2.0963 36 1 0.3369 -7.3830 1.8614 37 1 0.1924 -9.5925 0.9153 38 1 1.4519 -9.8279 2.1657 39 1 2.7461 -11.6814 1.9245 40 1 1.4325 -12.1859 0.8344 41 1 3.0713 -14.1515 2.3545 42 1 1.8754 -14.6117 1.1174 43 1 3.5584 -16.4203 1.5267 44 1 3.6118 -15.8172 -0.1480 45 1 5.4661 -14.9838 2.1323 46 1 5.9016 -16.0109 0.7439 47 1 6.6135 -13.6401 0.4112 48 1 5.4207 -14.1545 -0.8058 49 1 3.4335 -8.0745 -0.5628 50 1 2.0935 -8.5568 -1.6401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181957348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:09 Heat of formation + Delta-G solvation = -122.683664 kcal Electronic energy + Delta-G solvation = -29033.988466 eV Core-core repulsion = 24867.591812 eV Total energy + Delta-G solvation = -4166.396654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.44284 -39.46744 -38.37256 -37.54329 -34.72770 -33.93139 -33.79668 -33.17825 -31.26401 -30.65628 -29.39600 -28.24235 -26.12315 -24.79193 -24.02131 -23.35883 -22.61449 -20.89008 -20.61251 -19.36039 -19.26697 -17.92463 -17.26411 -16.96117 -16.46837 -16.21940 -15.88941 -15.58732 -15.25248 -14.88656 -14.71673 -14.55163 -14.51341 -13.99843 -13.77261 -13.64027 -13.60205 -13.17470 -12.99907 -12.74838 -12.59644 -12.56464 -12.41458 -12.12663 -12.04855 -11.64749 -11.60677 -11.47747 -11.46039 -11.37406 -11.15421 -11.02258 -10.94157 -10.64480 -10.44142 -10.21646 -9.90725 -9.65146 -9.50489 -8.74670 -8.48923 -8.09364 -7.96640 -6.42197 -3.83004 2.57361 2.78386 3.20432 3.26112 3.30778 3.49058 3.89531 4.03736 4.14065 4.24009 4.31386 4.39603 4.43986 4.48512 4.61615 4.73212 4.80775 4.84643 4.91402 5.03904 5.09399 5.10128 5.14049 5.19839 5.24172 5.25557 5.30695 5.34093 5.40366 5.49672 5.52846 5.59308 5.63057 5.71472 5.74226 5.76722 5.88218 5.89087 5.94538 5.99181 6.16626 6.26262 7.01522 7.16041 7.39777 7.54850 7.58166 8.05518 8.10493 8.60574 9.17404 9.53358 10.04892 10.75387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035741 B = 0.001587 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.222912 B =17638.468181 C =18071.613528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.658 5.658 14 C 0.080 3.920 15 H 0.093 0.907 16 C -0.167 4.167 17 C 0.102 3.898 18 N -0.623 5.623 19 C 0.529 3.471 20 O -0.527 6.527 21 C -0.130 4.130 22 C 0.106 3.894 23 H 0.065 0.935 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.158 4.158 27 C 0.063 3.937 28 O -0.366 6.366 29 C 0.116 3.884 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.354 0.646 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.079 0.921 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -30.270 5.103 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.290 5.290 14 C -0.032 4.032 15 H 0.112 0.888 16 C -0.207 4.207 17 C -0.021 4.021 18 N -0.359 5.359 19 C 0.317 3.683 20 O -0.402 6.402 21 C -0.170 4.170 22 C 0.048 3.952 23 H 0.083 0.917 24 C -0.189 4.189 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.014 4.014 28 O -0.285 6.285 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.175 0.825 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.110 0.890 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.183 -30.031 3.979 30.294 hybrid contribution -0.786 0.604 0.921 1.353 sum -0.969 -29.427 4.900 29.848 Atomic orbital electron populations 1.69602 1.05929 1.28264 1.50528 1.25256 0.95634 0.99713 0.97261 0.85913 0.78760 0.80423 0.79098 1.19869 1.20981 1.19923 1.19665 0.93379 0.82247 1.47717 0.87953 1.41847 1.09177 1.04580 1.64339 1.19797 0.88401 0.84715 0.84621 1.90538 1.13750 1.87035 1.55345 1.21696 0.94278 0.90787 1.01267 1.59960 1.18292 0.99135 1.51613 1.22615 0.96839 0.89572 0.94186 0.88843 1.23629 1.03509 0.94682 0.98890 1.22317 0.92358 0.96372 0.91068 1.48528 1.43161 1.10995 1.33189 1.20139 0.80298 0.82556 0.85280 1.90735 1.33733 1.82880 1.32860 1.21717 1.01219 0.93175 1.00882 1.21755 0.82365 0.92391 0.98726 0.91659 1.22237 1.00165 0.95412 1.01092 1.21571 0.94855 0.97713 1.01808 1.22223 0.96885 0.98755 1.01689 1.22516 0.94496 0.87025 0.97340 1.87995 1.15170 1.39978 1.85356 1.21893 1.01391 0.82718 0.94662 0.91828 0.77463 0.89472 0.93665 0.82533 0.90050 0.89623 0.91107 0.90626 0.88122 0.87698 0.90884 0.90777 0.91448 0.91755 0.91090 0.90974 0.88959 0.93199 0.90224 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.23 7.82 -10.99 -0.09 10.15 16 11 O -0.58 -15.82 15.78 5.54 0.09 -15.74 16 12 C 0.05 0.88 6.03 -4.98 -0.03 0.85 16 13 N -0.66 -10.24 5.94 -106.06 -0.63 -10.87 16 14 C 0.08 0.92 3.28 -65.87 -0.22 0.70 16 15 H 0.09 0.99 7.82 -51.93 -0.41 0.58 16 16 C -0.17 -1.50 6.68 -24.46 -0.16 -1.66 16 17 C 0.10 0.78 6.71 -2.41 -0.02 0.77 16 18 N -0.62 -6.89 3.32 -170.38 -0.57 -7.46 16 19 C 0.53 6.51 7.73 -10.98 -0.08 6.43 16 20 O -0.53 -8.74 15.75 -8.80 -0.14 -8.88 16 21 C -0.13 -1.06 4.41 -27.88 -0.12 -1.18 16 22 C 0.11 0.95 2.19 -26.69 -0.06 0.89 16 23 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 24 C -0.15 -0.93 5.42 -26.59 -0.14 -1.07 16 25 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 26 C -0.16 -1.01 6.14 -26.59 -0.16 -1.17 16 27 C 0.06 0.55 6.84 37.20 0.25 0.80 16 28 O -0.37 -4.21 9.64 -49.58 -0.48 -4.69 16 29 C 0.12 1.48 6.62 -3.06 -0.02 1.46 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.35 5.76 7.90 -39.29 -0.31 5.44 16 35 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.08 0.45 7.47 -51.93 -0.39 0.06 16 39 H 0.10 0.72 7.85 -51.92 -0.41 0.31 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -34.65 402.79 -9.76 -44.41 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.49 Total: 10.82 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.25 Total: 8.10 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.53 Total: -56.10 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.53 Total: -29.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.65 -9.76 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181957348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.274 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds