Wall clock time and date at job start Sat Apr 11 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00135 * 2 1 4 4 H 1.48507 * 109.46894 * 240.00173 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47244 * 120.00094 * 3 2 1 7 7 C 1.38950 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00396 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99757 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00149 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00289 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47274 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00019 * 179.97438 * 13 12 10 15 15 H 1.09000 * 110.64405 * 31.86368 * 14 13 12 16 16 C 1.55161 * 110.72012 * 268.52535 * 14 13 12 17 17 C 1.55137 * 101.48526 * 205.97068 * 16 14 13 18 18 N 1.47423 * 104.71983 * 37.29517 * 17 16 14 19 19 C 1.34777 * 125.64829 * 155.82193 * 18 17 16 20 20 O 1.21283 * 120.00463 * 179.69258 * 19 18 17 21 21 C 1.50700 * 119.99675 * 359.41380 * 19 18 17 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 H 1.09000 * 109.48102 * 305.02372 * 22 21 19 24 24 C 1.53085 * 109.48107 * 184.99779 * 22 21 19 25 25 C 1.53181 * 109.16476 * 182.40570 * 24 22 21 26 26 C 1.53179 * 109.03221 * 56.98290 * 25 24 22 27 27 C 1.53090 * 109.16242 * 303.01848 * 26 25 24 28 28 O 1.42901 * 109.41667 * 57.61184 * 27 26 25 29 29 C 1.47019 * 108.70731 * 335.55081 * 18 17 16 30 30 H 0.96999 * 119.99618 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00310 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.46948 * 60.00306 * 12 10 9 33 33 H 1.08995 * 109.47385 * 300.00576 * 12 10 9 34 34 H 1.00908 * 110.99815 * 56.05245 * 13 12 10 35 35 H 1.08994 * 111.00643 * 324.20848 * 16 14 13 36 36 H 1.08997 * 111.00702 * 88.06355 * 16 14 13 37 37 H 1.09007 * 110.49426 * 278.45664 * 17 16 14 38 38 H 1.08993 * 110.34231 * 156.05913 * 17 16 14 39 39 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 40 40 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 41 41 H 1.09004 * 109.52820 * 302.31455 * 24 22 21 42 42 H 1.09007 * 109.52611 * 62.50430 * 24 22 21 43 43 H 1.09001 * 109.54619 * 176.84671 * 25 24 22 44 44 H 1.09001 * 109.54463 * 297.03117 * 25 24 22 45 45 H 1.08997 * 109.52252 * 62.92805 * 26 25 24 46 46 H 1.09000 * 109.52247 * 183.11790 * 26 25 24 47 47 H 1.09006 * 109.48034 * 177.59227 * 27 26 25 48 48 H 1.08997 * 109.48573 * 297.61646 * 27 26 25 49 49 H 1.09003 * 109.88210 * 120.70469 * 29 18 17 50 50 H 1.08996 * 109.88947 * 241.87267 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0034 13 7 2.1983 -5.9795 0.0024 14 6 1.4980 -7.2708 0.0046 15 1 0.5522 -7.1960 -0.5321 16 6 1.2719 -7.7701 1.4562 17 6 1.1905 -9.3050 1.2458 18 7 2.1820 -9.5918 0.1931 19 6 2.7950 -10.7753 -0.0071 20 8 3.5933 -10.8994 -0.9117 21 6 2.4931 -11.9426 0.8969 22 6 3.3205 -13.1533 0.4601 23 1 3.1341 -13.3599 -0.5938 24 6 2.9234 -14.3719 1.2973 25 6 3.7974 -15.5642 0.8958 26 6 5.2708 -15.1878 1.0796 27 6 5.5772 -13.9376 0.2508 28 8 4.7091 -12.8763 0.6533 29 6 2.3865 -8.3749 -0.6062 30 1 -0.4849 0.8401 0.0004 31 1 0.3534 -2.3906 0.0016 32 1 0.6161 -4.9213 -0.8859 33 1 0.6181 -4.9201 0.8940 34 1 2.8344 -5.9121 0.7828 35 1 2.1130 -7.5042 2.0963 36 1 0.3369 -7.3830 1.8614 37 1 0.1924 -9.5925 0.9153 38 1 1.4519 -9.8279 2.1657 39 1 2.7461 -11.6814 1.9245 40 1 1.4325 -12.1859 0.8344 41 1 3.0713 -14.1515 2.3545 42 1 1.8754 -14.6117 1.1174 43 1 3.5584 -16.4203 1.5267 44 1 3.6118 -15.8172 -0.1480 45 1 5.4661 -14.9838 2.1323 46 1 5.9016 -16.0109 0.7439 47 1 6.6135 -13.6401 0.4112 48 1 5.4207 -14.1545 -0.8058 49 1 3.4335 -8.0745 -0.5628 50 1 2.0935 -8.5568 -1.6401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181957348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:07 Heat of formation + Delta-G solvation = -148.266611 kcal Electronic energy + Delta-G solvation = -29035.097825 eV Core-core repulsion = 24867.591812 eV Total energy + Delta-G solvation = -4167.506014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.29339 -40.32642 -39.95739 -38.66162 -36.18181 -35.53488 -34.50806 -33.86491 -33.26243 -31.65478 -30.20412 -29.12100 -27.63933 -25.82468 -25.21405 -24.21752 -23.27180 -21.83129 -21.16611 -21.09621 -20.16733 -19.91884 -18.20465 -17.74000 -17.64609 -17.28464 -16.78576 -16.71413 -16.44232 -16.32037 -15.88532 -15.50539 -15.38692 -15.29917 -15.16427 -14.69498 -14.36855 -14.11418 -14.05632 -13.68650 -13.55447 -13.49336 -13.43924 -13.25993 -13.06976 -12.96096 -12.84592 -12.67312 -12.43744 -12.36508 -12.16362 -12.11751 -11.96479 -11.78561 -11.62335 -11.50123 -11.26076 -10.87568 -10.35802 -10.30813 -10.00923 -9.66345 -9.30370 -8.46202 -5.94751 1.40082 1.42300 1.52828 1.67054 1.92812 2.06365 2.30189 2.85696 2.92784 3.21213 3.39305 3.49022 3.66203 3.74246 3.85790 3.95090 3.98967 4.07950 4.13273 4.21404 4.26243 4.33373 4.35231 4.39458 4.47323 4.52010 4.56972 4.61797 4.65682 4.71934 4.77302 4.84653 4.87766 4.89867 4.98210 5.03227 5.08813 5.12029 5.14422 5.18905 5.29955 5.40546 5.41420 5.90244 6.11344 6.34194 6.35254 6.55339 6.61225 7.13456 7.19839 7.57174 8.13204 8.70718 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035741 B = 0.001587 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.222912 B =17638.468181 C =18071.613528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.070 3.930 13 N -0.680 5.680 14 C 0.085 3.915 15 H 0.112 0.888 16 C -0.160 4.160 17 C 0.102 3.898 18 N -0.622 5.622 19 C 0.518 3.482 20 O -0.584 6.584 21 C -0.121 4.121 22 C 0.099 3.901 23 H 0.045 0.955 24 C -0.143 4.143 25 C -0.124 4.124 26 C -0.152 4.152 27 C 0.056 3.944 28 O -0.399 6.399 29 C 0.117 3.883 30 H 0.278 0.722 31 H 0.398 0.602 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.346 0.654 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -31.666 6.824 32.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.222 3.778 11 O -0.514 6.514 12 C -0.062 4.062 13 N -0.311 5.311 14 C -0.026 4.026 15 H 0.130 0.870 16 C -0.199 4.199 17 C -0.019 4.019 18 N -0.357 5.357 19 C 0.309 3.691 20 O -0.463 6.463 21 C -0.160 4.160 22 C 0.041 3.959 23 H 0.063 0.937 24 C -0.181 4.181 25 C -0.162 4.162 26 C -0.189 4.189 27 C -0.021 4.021 28 O -0.318 6.318 29 C -0.007 4.007 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.756 -31.443 5.726 32.079 hybrid contribution 0.038 1.016 0.338 1.071 sum -2.718 -30.427 6.064 31.145 Atomic orbital electron populations 1.69654 1.06700 1.29353 1.50130 1.25991 0.96545 1.02253 0.96217 0.85018 0.77802 0.76833 0.78851 1.19998 1.19336 1.19728 1.19621 0.92681 0.84181 1.50180 0.90544 1.41901 1.09354 1.04609 1.64980 1.20978 0.88255 0.86345 0.82195 1.90508 1.16137 1.88019 1.56756 1.21543 0.93736 0.87317 1.03615 1.59882 1.18911 1.00516 1.51840 1.22618 0.96490 0.87026 0.96466 0.86957 1.23587 1.04268 0.95619 0.96467 1.22607 0.92703 0.95539 0.91085 1.48644 1.43482 1.10012 1.33531 1.21024 0.79337 0.83666 0.85090 1.90706 1.36273 1.83909 1.35446 1.21815 1.03197 0.90790 1.00187 1.21923 0.81478 0.94150 0.98362 0.93704 1.22195 1.01369 0.93885 1.00641 1.21620 0.94183 0.98242 1.02124 1.22171 0.97905 0.97774 1.01083 1.22636 0.94270 0.87793 0.97406 1.87944 1.16736 1.41605 1.85562 1.21727 0.99681 0.84363 0.94939 0.91263 0.76811 0.87521 0.90436 0.83387 0.91140 0.87191 0.88228 0.88082 0.86530 0.83936 0.90280 0.88583 0.89696 0.91976 0.91080 0.89653 0.89135 0.94066 0.93769 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.34 -19.17 9.68 84.04 0.81 -18.35 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.95 5.29 -306.98 -1.62 -30.57 16 10 C 0.43 20.45 7.82 87.66 0.69 21.13 16 11 O -0.63 -35.20 15.78 -3.09 -0.05 -35.25 16 12 C 0.07 2.24 6.03 85.56 0.52 2.76 16 13 N -0.68 -20.84 5.94 -489.45 -2.91 -23.74 16 14 C 0.08 1.81 3.28 46.11 0.15 1.97 16 15 H 0.11 2.03 7.82 -2.39 -0.02 2.01 16 16 C -0.16 -2.37 6.68 32.07 0.21 -2.15 16 17 C 0.10 1.18 6.71 86.94 0.58 1.76 16 18 N -0.62 -13.06 3.32 -811.34 -2.70 -15.76 16 19 C 0.52 12.62 7.73 87.66 0.68 13.30 16 20 O -0.58 -20.47 15.75 10.68 0.17 -20.30 16 21 C -0.12 -1.70 4.41 29.85 0.13 -1.57 16 22 C 0.10 1.70 2.19 30.62 0.07 1.76 16 23 H 0.04 0.93 7.95 -2.39 -0.02 0.91 16 24 C -0.14 -1.41 5.42 30.68 0.17 -1.24 16 25 C -0.12 -1.21 6.03 30.71 0.19 -1.02 16 26 C -0.15 -1.79 6.14 30.68 0.19 -1.60 16 27 C 0.06 1.00 6.84 72.01 0.49 1.50 16 28 O -0.40 -9.40 9.64 -135.26 -1.30 -10.70 16 29 C 0.12 3.03 6.62 86.73 0.57 3.60 16 30 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 31 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 32 H 0.11 3.05 8.08 -2.39 -0.02 3.03 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.35 11.41 7.90 -89.69 -0.71 10.70 16 35 H 0.07 1.23 7.77 -2.39 -0.02 1.21 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.10 0.73 7.47 -2.39 -0.02 0.71 16 39 H 0.12 1.31 7.85 -2.38 -0.02 1.29 16 40 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.04 1.44 8.03 -2.39 -0.02 1.42 16 50 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -80.16 402.79 -0.68 -80.84 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.50 Total: 37.38 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 5.91 Total: 21.76 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -6.94 Total: -118.70 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -1.18 Total: -66.26 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.16 -0.68 -80.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181957348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.425 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds