Wall clock time and date at job start Sat Apr 11 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47361 * 270.00354 * 3 2 1 5 5 H 1.48497 * 109.47115 * 30.00503 * 3 2 1 6 6 H 1.48501 * 109.47114 * 150.00248 * 3 2 1 7 7 C 1.38952 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99603 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00570 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00252 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99620 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00265 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47356 * 184.76897 * 12 10 9 14 14 C 1.46261 * 111.00069 * 64.03322 * 13 12 10 15 15 C 1.47547 * 114.25175 * 148.47620 * 14 13 12 16 16 C 1.54939 * 109.73497 * 62.30296 * 15 14 13 17 17 N 1.44678 * 109.52168 * 290.52041 * 16 15 14 18 18 C 1.34783 * 118.54670 * 269.09874 * 17 16 15 19 19 O 1.21283 * 119.99803 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99943 * 0.02562 * 18 17 16 21 21 C 1.52993 * 109.46707 * 179.97438 * 20 18 17 22 22 H 1.08997 * 110.33802 * 305.70049 * 21 20 18 23 23 C 1.54485 * 110.36878 * 183.44945 * 21 20 18 24 24 C 1.54506 * 104.06329 * 217.19044 * 23 21 20 25 25 C 1.54479 * 104.06463 * 0.02562 * 24 23 21 26 26 O 1.44429 * 110.37463 * 67.95760 * 21 20 18 27 27 C 1.47776 * 122.90789 * 89.08232 * 17 16 15 28 28 C 1.44928 * 110.94821 * 300.70119 * 13 12 10 29 29 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46826 * 64.76672 * 12 10 9 32 32 H 1.09003 * 109.47134 * 304.76693 * 12 10 9 33 33 H 1.08996 * 108.50256 * 27.29128 * 14 13 12 34 34 H 1.08997 * 108.50354 * 269.66331 * 14 13 12 35 35 H 1.09002 * 109.42170 * 182.38109 * 15 14 13 36 36 H 1.09000 * 109.42736 * 302.21414 * 15 14 13 37 37 H 1.09005 * 109.46784 * 50.53931 * 16 15 14 38 38 H 1.09005 * 109.46438 * 170.50877 * 16 15 14 39 39 H 1.09001 * 109.47124 * 300.00179 * 20 18 17 40 40 H 1.08998 * 109.46655 * 59.99692 * 20 18 17 41 41 H 1.08993 * 110.51546 * 335.84119 * 23 21 20 42 42 H 1.09010 * 110.51051 * 98.41231 * 23 21 20 43 43 H 1.09000 * 110.51266 * 118.64845 * 24 23 21 44 44 H 1.09000 * 110.51110 * 241.22141 * 24 23 21 45 45 H 1.08993 * 110.37703 * 142.80946 * 25 24 23 46 46 H 1.09003 * 110.37117 * 265.14706 * 25 24 23 47 47 H 1.08994 * 109.06682 * 78.64014 * 27 17 16 48 48 H 1.09001 * 109.06552 * 197.64713 * 27 17 16 49 49 H 1.08998 * 109.51201 * 97.90174 * 28 13 12 50 50 H 1.09008 * 109.48424 * 337.95400 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4209 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 7 6.0503 -3.7507 -0.1171 14 6 5.6604 -4.3403 -1.3976 15 6 6.6215 -5.3257 -1.9288 16 6 6.7370 -6.5230 -0.9522 17 7 7.4036 -6.0965 0.2590 18 6 8.7447 -6.2102 0.3303 19 8 9.3304 -5.8611 1.3333 20 6 9.5164 -6.7713 -0.8363 21 6 11.0084 -6.7911 -0.4984 22 1 11.3407 -5.7991 -0.1923 23 6 11.8282 -7.2820 -1.7123 24 6 12.9566 -8.1307 -1.0849 25 6 12.6848 -8.0527 0.4338 26 8 11.2753 -7.7546 0.5439 27 6 6.6792 -5.5412 1.4212 28 6 5.5724 -4.5634 0.9836 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9247 -1.9320 0.9269 32 1 5.9234 -1.7849 -0.8470 33 1 5.5478 -3.5387 -2.1275 34 1 4.6952 -4.8311 -1.2728 35 1 6.2765 -5.6817 -2.8996 36 1 7.5980 -4.8549 -2.0424 37 1 5.7401 -6.8901 -0.7080 38 1 7.3126 -7.3207 -1.4218 39 1 9.1766 -7.7863 -1.0423 40 1 9.3513 -6.1475 -1.7147 41 1 11.2096 -7.8942 -2.3685 42 1 12.2433 -6.4360 -2.2602 43 1 12.8959 -9.1626 -1.4309 44 1 13.9316 -7.7058 -1.3232 45 1 12.9098 -9.0074 0.9091 46 1 13.2753 -7.2550 0.8845 47 1 6.2295 -6.3589 1.9843 48 1 7.3856 -5.0139 2.0623 49 1 4.6952 -5.1270 0.6659 50 1 5.3052 -3.9195 1.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194970495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:45 Heat of formation + Delta-G solvation = -97.451366 kcal Electronic energy + Delta-G solvation = -30667.952736 eV Core-core repulsion = 26502.650237 eV Total energy + Delta-G solvation = -4165.302499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.49885 -39.57894 -38.81851 -37.17474 -34.99346 -33.85132 -32.95713 -32.43084 -31.83361 -31.73397 -29.44877 -27.04863 -26.38122 -25.59873 -23.89129 -22.84995 -21.82216 -21.09558 -20.65660 -19.43676 -18.85287 -18.24995 -17.27990 -16.79496 -16.32641 -15.99088 -15.90606 -15.70748 -15.45708 -15.09239 -14.81538 -14.46137 -14.20368 -13.94521 -13.88137 -13.54738 -13.27570 -13.04889 -12.92627 -12.60559 -12.56945 -12.28107 -12.12247 -12.02027 -11.94854 -11.60413 -11.46834 -11.39659 -11.30631 -11.23091 -10.99452 -10.93781 -10.69730 -10.64781 -10.40056 -10.06863 -9.90710 -9.62824 -9.57695 -9.24690 -8.45722 -8.26002 -7.70780 -6.39187 -3.90604 2.78050 2.98126 3.02174 3.09677 3.10895 3.62574 3.67023 4.03670 4.12419 4.26588 4.36136 4.59717 4.60878 4.67093 4.79705 4.83317 4.90362 5.00814 5.11271 5.14266 5.20427 5.27857 5.33455 5.35559 5.41739 5.46428 5.49370 5.52784 5.56937 5.67857 5.72227 5.75105 5.81283 5.82727 5.86764 5.91583 5.93175 6.06988 6.15719 6.38581 6.47248 6.66433 6.69764 7.24924 7.40345 7.48970 7.52817 8.05997 8.34821 8.49669 8.86110 9.34181 9.71859 10.73573 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.002173 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.039493 B =12881.788749 C =12996.352624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.119 0.881 9 N -0.584 5.584 10 C 0.414 3.586 11 O -0.579 6.579 12 C 0.041 3.959 13 N -0.505 5.505 14 C 0.050 3.950 15 C -0.132 4.132 16 C 0.109 3.891 17 N -0.593 5.593 18 C 0.514 3.486 19 O -0.537 6.537 20 C -0.135 4.135 21 C 0.091 3.909 22 H 0.076 0.924 23 C -0.153 4.153 24 C -0.155 4.155 25 C 0.043 3.957 26 O -0.359 6.359 27 C 0.120 3.880 28 C 0.049 3.951 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.223 -12.981 -5.350 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.136 0.864 9 N -0.222 5.222 10 C 0.200 3.800 11 O -0.464 6.464 12 C -0.091 4.091 13 N -0.227 5.227 14 C -0.077 4.077 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.325 5.325 18 C 0.301 3.699 19 O -0.413 6.413 20 C -0.175 4.175 21 C 0.033 3.967 22 H 0.094 0.906 23 C -0.190 4.190 24 C -0.193 4.193 25 C -0.034 4.034 26 O -0.277 6.277 27 C -0.003 4.003 28 C -0.081 4.081 29 H 0.085 0.915 30 H 0.204 0.796 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.234 -13.452 -4.630 27.244 hybrid contribution -0.381 1.630 -0.327 1.705 sum 22.853 -11.823 -4.958 26.204 Atomic orbital electron populations 1.69618 1.05708 1.27650 1.48787 1.25078 0.95521 0.98124 0.97418 0.86664 0.79848 0.83913 0.78952 1.19575 1.20098 1.19381 1.19434 0.79419 0.96548 1.48241 0.86382 1.42365 1.07620 1.06484 1.65748 1.21008 0.89934 0.84630 0.84432 1.90524 1.69893 1.30674 1.55281 1.22278 0.92055 0.91246 1.03500 1.61417 1.57643 1.01080 1.02585 1.20974 0.97809 0.97827 0.91133 1.21461 1.00920 0.96498 0.98182 1.21631 0.98607 0.96094 0.85146 1.47549 1.06271 1.62436 1.16249 1.20446 0.82228 0.78363 0.88816 1.90686 1.68645 1.49369 1.32625 1.21841 0.94070 1.03402 0.98217 1.22713 0.93528 0.93825 0.86620 0.90599 1.23022 0.97381 1.00327 0.98317 1.22932 0.99170 1.01017 0.96194 1.23382 0.83590 1.01113 0.95338 1.89254 1.23753 1.61023 1.53707 1.22023 0.94997 0.96124 0.87121 1.22371 0.95370 0.95734 0.94596 0.91522 0.79598 0.89074 0.89418 0.92258 0.92136 0.90467 0.91493 0.90445 0.90629 0.88356 0.87604 0.90470 0.90336 0.90755 0.90627 0.89309 0.92382 0.92224 0.89470 0.91353 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.09 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.35 16 9 N -0.58 -13.45 5.09 -10.96 -0.06 -13.51 16 10 C 0.41 8.84 7.10 -10.99 -0.08 8.76 16 11 O -0.58 -14.14 12.13 5.54 0.07 -14.07 16 12 C 0.04 0.67 5.48 -4.98 -0.03 0.64 16 13 N -0.51 -7.74 4.37 -240.91 -1.05 -8.80 16 14 C 0.05 0.72 4.09 -6.80 -0.03 0.70 16 15 C -0.13 -1.38 5.94 -28.34 -0.17 -1.54 16 16 C 0.11 1.11 5.23 -3.99 -0.02 1.09 16 17 N -0.59 -7.51 2.53 -172.21 -0.44 -7.95 16 18 C 0.51 6.93 7.54 -10.98 -0.08 6.85 16 19 O -0.54 -9.35 14.85 -3.88 -0.06 -9.41 16 20 C -0.14 -1.28 3.80 -27.89 -0.11 -1.38 16 21 C 0.09 0.91 2.75 -25.96 -0.07 0.84 16 22 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 23 C -0.15 -1.03 6.63 -25.16 -0.17 -1.19 16 24 C -0.16 -0.98 7.09 -25.17 -0.18 -1.16 16 25 C 0.04 0.36 7.63 37.93 0.29 0.65 16 26 O -0.36 -4.40 10.83 -44.66 -0.48 -4.88 16 27 C 0.12 1.68 6.45 -2.80 -0.02 1.66 16 28 C 0.05 0.76 4.12 -4.34 -0.02 0.74 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.37 7.58 5.76 -40.82 -0.24 7.35 16 31 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 33 H 0.06 0.88 7.54 -51.93 -0.39 0.49 16 34 H 0.06 1.03 6.02 -51.93 -0.31 0.72 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 7.42 -51.93 -0.39 0.31 16 37 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.08 0.57 6.18 -51.93 -0.32 0.24 16 39 H 0.10 0.79 7.30 -51.93 -0.38 0.41 16 40 H 0.11 0.78 7.26 -51.93 -0.38 0.40 16 41 H 0.08 0.44 7.87 -51.93 -0.41 0.04 16 42 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.09 1.35 6.97 -51.93 -0.36 0.98 16 49 H 0.07 1.20 6.07 -51.93 -0.32 0.88 16 50 H 0.07 1.24 7.47 -51.92 -0.39 0.85 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -34.26 382.35 -9.17 -43.44 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -8.05 Total: 10.47 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.92 Total: 9.06 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.77 Total: -54.75 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.47 Total: -28.36 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.26 -9.17 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194970495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.012 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds