Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48498 * 109.47361 * 270.00354 * 3 2 1 5 5 H 1.48497 * 109.47115 * 30.00503 * 3 2 1 6 6 H 1.48501 * 109.47114 * 150.00248 * 3 2 1 7 7 C 1.38952 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99603 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00570 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00252 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99620 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00265 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47356 * 184.76897 * 12 10 9 14 14 C 1.46261 * 111.00069 * 64.03322 * 13 12 10 15 15 C 1.47547 * 114.25175 * 148.47620 * 14 13 12 16 16 C 1.54939 * 109.73497 * 62.30296 * 15 14 13 17 17 N 1.44678 * 109.52168 * 290.52041 * 16 15 14 18 18 C 1.34783 * 118.54670 * 269.09874 * 17 16 15 19 19 O 1.21283 * 119.99803 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99943 * 0.02562 * 18 17 16 21 21 C 1.52993 * 109.46707 * 179.97438 * 20 18 17 22 22 H 1.08997 * 110.33802 * 305.70049 * 21 20 18 23 23 C 1.54485 * 110.36878 * 183.44945 * 21 20 18 24 24 C 1.54506 * 104.06329 * 217.19044 * 23 21 20 25 25 C 1.54479 * 104.06463 * 0.02562 * 24 23 21 26 26 O 1.44429 * 110.37463 * 67.95760 * 21 20 18 27 27 C 1.47776 * 122.90789 * 89.08232 * 17 16 15 28 28 C 1.44928 * 110.94821 * 300.70119 * 13 12 10 29 29 H 0.96998 * 120.00148 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46826 * 64.76672 * 12 10 9 32 32 H 1.09003 * 109.47134 * 304.76693 * 12 10 9 33 33 H 1.08996 * 108.50256 * 27.29128 * 14 13 12 34 34 H 1.08997 * 108.50354 * 269.66331 * 14 13 12 35 35 H 1.09002 * 109.42170 * 182.38109 * 15 14 13 36 36 H 1.09000 * 109.42736 * 302.21414 * 15 14 13 37 37 H 1.09005 * 109.46784 * 50.53931 * 16 15 14 38 38 H 1.09005 * 109.46438 * 170.50877 * 16 15 14 39 39 H 1.09001 * 109.47124 * 300.00179 * 20 18 17 40 40 H 1.08998 * 109.46655 * 59.99692 * 20 18 17 41 41 H 1.08993 * 110.51546 * 335.84119 * 23 21 20 42 42 H 1.09010 * 110.51051 * 98.41231 * 23 21 20 43 43 H 1.09000 * 110.51266 * 118.64845 * 24 23 21 44 44 H 1.09000 * 110.51110 * 241.22141 * 24 23 21 45 45 H 1.08993 * 110.37703 * 142.80946 * 25 24 23 46 46 H 1.09003 * 110.37117 * 265.14706 * 25 24 23 47 47 H 1.08994 * 109.06682 * 78.64014 * 27 17 16 48 48 H 1.09001 * 109.06552 * 197.64713 * 27 17 16 49 49 H 1.08998 * 109.51201 * 97.90174 * 28 13 12 50 50 H 1.09008 * 109.48424 * 337.95400 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0011 11 8 3.4472 -3.4209 -0.0011 12 6 5.5607 -2.3705 -0.0022 13 7 6.0503 -3.7507 -0.1171 14 6 5.6604 -4.3403 -1.3976 15 6 6.6215 -5.3257 -1.9288 16 6 6.7370 -6.5230 -0.9522 17 7 7.4036 -6.0965 0.2590 18 6 8.7447 -6.2102 0.3303 19 8 9.3304 -5.8611 1.3333 20 6 9.5164 -6.7713 -0.8363 21 6 11.0084 -6.7911 -0.4984 22 1 11.3407 -5.7991 -0.1923 23 6 11.8282 -7.2820 -1.7123 24 6 12.9566 -8.1307 -1.0849 25 6 12.6848 -8.0527 0.4338 26 8 11.2753 -7.7546 0.5439 27 6 6.6792 -5.5412 1.4212 28 6 5.5724 -4.5634 0.9836 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9247 -1.9320 0.9269 32 1 5.9234 -1.7849 -0.8470 33 1 5.5478 -3.5387 -2.1275 34 1 4.6952 -4.8311 -1.2728 35 1 6.2765 -5.6817 -2.8996 36 1 7.5980 -4.8549 -2.0424 37 1 5.7401 -6.8901 -0.7080 38 1 7.3126 -7.3207 -1.4218 39 1 9.1766 -7.7863 -1.0423 40 1 9.3513 -6.1475 -1.7147 41 1 11.2096 -7.8942 -2.3685 42 1 12.2433 -6.4360 -2.2602 43 1 12.8959 -9.1626 -1.4309 44 1 13.9316 -7.7058 -1.3232 45 1 12.9098 -9.0074 0.9091 46 1 13.2753 -7.2550 0.8845 47 1 6.2295 -6.3589 1.9843 48 1 7.3856 -5.0139 2.0623 49 1 4.6952 -5.1270 0.6659 50 1 5.3052 -3.9195 1.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194970495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -123.512283 kcal Electronic energy + Delta-G solvation = -30669.082822 eV Core-core repulsion = 26502.650237 eV Total energy + Delta-G solvation = -4166.432586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.57534 -40.77019 -39.89250 -38.53175 -36.36414 -35.61418 -33.93900 -33.80462 -33.17924 -32.49688 -30.70132 -28.19827 -27.35389 -26.87349 -25.49360 -23.67800 -22.59412 -21.99624 -21.75603 -21.25788 -20.15166 -19.75646 -18.19233 -17.91534 -17.61874 -17.06463 -16.95846 -16.72679 -16.50301 -16.34109 -16.17061 -15.76324 -15.44136 -15.18271 -15.11393 -14.58362 -14.53636 -14.36491 -14.20632 -13.98703 -13.71446 -13.37947 -13.14445 -13.06048 -12.89462 -12.68848 -12.55468 -12.44602 -12.36884 -12.19041 -12.08221 -12.04091 -12.02820 -11.80152 -11.63754 -11.42840 -11.40061 -10.93670 -10.66464 -10.62051 -10.26939 -9.50857 -9.18361 -8.44928 -6.05197 1.28521 1.32223 1.41767 1.78593 1.89283 2.12163 2.19684 2.88028 2.95730 3.03905 3.12282 3.63188 3.70376 3.88016 3.94009 4.02958 4.06289 4.10476 4.13605 4.20913 4.22730 4.26502 4.36206 4.51325 4.55812 4.58616 4.64185 4.70058 4.72578 4.76028 4.82693 4.84083 4.89638 4.97492 5.00041 5.02313 5.08436 5.10443 5.18851 5.26866 5.41501 5.49659 5.66097 5.89964 5.98857 6.01473 6.12802 6.54335 6.56108 6.84444 7.34277 7.35677 7.90202 8.72376 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.002173 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.039493 B =12881.788749 C =12996.352624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.589 5.589 10 C 0.419 3.581 11 O -0.613 6.613 12 C 0.048 3.952 13 N -0.499 5.499 14 C 0.052 3.948 15 C -0.124 4.124 16 C 0.106 3.894 17 N -0.593 5.593 18 C 0.507 3.493 19 O -0.584 6.584 20 C -0.128 4.128 21 C 0.084 3.916 22 H 0.053 0.947 23 C -0.145 4.145 24 C -0.150 4.150 25 C 0.033 3.967 26 O -0.395 6.395 27 C 0.128 3.872 28 C 0.058 3.942 29 H 0.279 0.721 30 H 0.389 0.611 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.027 0.973 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.135 0.865 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.737 -12.520 -7.498 30.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.214 4.214 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.157 1.157 7 C -0.456 4.456 8 H 0.074 0.926 9 N -0.230 5.230 10 C 0.206 3.794 11 O -0.499 6.499 12 C -0.083 4.083 13 N -0.220 5.220 14 C -0.076 4.076 15 C -0.163 4.163 16 C -0.017 4.017 17 N -0.324 5.324 18 C 0.297 3.703 19 O -0.464 6.464 20 C -0.167 4.167 21 C 0.026 3.974 22 H 0.071 0.929 23 C -0.182 4.182 24 C -0.188 4.188 25 C -0.044 4.044 26 O -0.315 6.315 27 C 0.004 3.996 28 C -0.071 4.071 29 H 0.088 0.912 30 H 0.224 0.776 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.153 0.847 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.769 -13.026 -6.805 30.538 hybrid contribution -1.525 1.324 0.383 2.055 sum 25.245 -11.702 -6.422 28.557 Atomic orbital electron populations 1.69796 1.08110 1.29242 1.50158 1.26116 0.96461 1.02722 0.96104 0.85387 0.79438 0.76899 0.79963 1.18051 1.20147 1.15669 1.18991 0.81601 0.94783 1.50180 0.92617 1.42218 1.05867 1.07888 1.66995 1.22194 0.92231 0.83513 0.81451 1.90531 1.71504 1.32094 1.55764 1.22436 0.87399 0.92530 1.05965 1.61609 1.56628 1.00796 1.02975 1.21069 0.97623 0.98434 0.90470 1.21435 1.00314 0.95415 0.99089 1.21844 0.98710 0.97008 0.84168 1.47667 1.06372 1.61888 1.16513 1.21234 0.82196 0.77520 0.89372 1.90666 1.69535 1.51502 1.34743 1.21922 0.93033 1.04667 0.97056 1.22811 0.94367 0.92635 0.87599 0.92889 1.23011 0.97125 1.01053 0.97050 1.22930 0.99850 1.01812 0.94164 1.23574 0.82116 1.01318 0.97387 1.89215 1.25671 1.61509 1.55082 1.21784 0.94065 0.95853 0.87863 1.22209 0.95124 0.95580 0.94203 0.91159 0.77601 0.86961 0.86250 0.92515 0.95505 0.87696 0.90275 0.91330 0.86861 0.86317 0.84701 0.88778 0.88910 0.89700 0.89180 0.88567 0.92870 0.91673 0.90945 0.93817 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.96 21.66 0.30 -55.47 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.96 38.58 27.74 68.60 1.90 40.49 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 7 C -0.33 -18.74 10.16 84.04 0.85 -17.89 16 8 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.08 5.09 -306.98 -1.56 -28.64 16 10 C 0.42 17.98 7.10 87.66 0.62 18.60 16 11 O -0.61 -31.29 12.13 -3.08 -0.04 -31.33 16 12 C 0.05 1.48 5.48 85.56 0.47 1.95 16 13 N -0.50 -14.73 4.37 -916.10 -4.01 -18.74 16 14 C 0.05 1.42 4.09 84.72 0.35 1.77 16 15 C -0.12 -2.20 5.94 29.55 0.18 -2.02 16 16 C 0.11 1.87 5.23 87.38 0.46 2.33 16 17 N -0.59 -14.21 2.53 -817.15 -2.07 -16.28 16 18 C 0.51 12.96 7.54 87.66 0.66 13.62 16 19 O -0.58 -20.46 14.85 5.98 0.09 -20.37 16 20 C -0.13 -2.01 3.80 29.85 0.11 -1.90 16 21 C 0.08 1.52 2.75 31.10 0.09 1.60 16 22 H 0.05 1.17 7.96 -2.39 -0.02 1.15 16 23 C -0.14 -1.45 6.63 31.61 0.21 -1.24 16 24 C -0.15 -1.47 7.09 31.61 0.22 -1.25 16 25 C 0.03 0.52 7.63 72.48 0.55 1.07 16 26 O -0.40 -9.38 10.83 -139.96 -1.52 -10.90 16 27 C 0.13 3.60 6.45 86.48 0.56 4.16 16 28 C 0.06 1.86 4.12 87.02 0.36 2.22 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 31 H 0.11 3.04 8.07 -2.39 -0.02 3.02 16 32 H 0.12 2.99 7.93 -2.39 -0.02 2.97 16 33 H 0.06 1.57 7.54 -2.39 -0.02 1.56 16 34 H 0.03 0.92 6.02 -2.39 -0.01 0.91 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.28 7.42 -2.39 -0.02 1.27 16 37 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 38 H 0.11 1.20 6.18 -2.38 -0.01 1.18 16 39 H 0.12 1.42 7.30 -2.39 -0.02 1.40 16 40 H 0.14 1.33 7.26 -2.39 -0.02 1.31 16 41 H 0.09 0.65 7.87 -2.39 -0.02 0.63 16 42 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.07 2.29 6.97 -2.39 -0.02 2.27 16 49 H 0.04 1.61 6.07 -2.39 -0.01 1.60 16 50 H 0.06 2.09 7.47 -2.38 -0.02 2.07 16 Total: -1.00 -82.36 382.35 -0.39 -82.75 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.36 Total: 35.84 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.15 Total: 22.66 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.34 Total: -119.13 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -1.46 Total: -62.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.49 kcal Total: -82.36 -0.39 -82.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194970495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.766 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds