Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 110.01639 * 2 1 4 4 O 1.21280 * 120.00638 * 239.29830 * 3 2 1 5 5 N 1.34785 * 120.00118 * 59.29818 * 3 2 1 6 6 C 1.46493 * 120.00133 * 179.97438 * 5 3 2 7 7 H 1.09001 * 110.64799 * 31.84812 * 6 5 3 8 8 C 1.54945 * 110.72461 * 268.50067 * 6 5 3 9 9 N 1.48535 * 103.22737 * 204.23057 * 8 6 5 10 10 C 1.46892 * 110.99896 * 159.72446 * 9 8 6 11 11 C 1.50701 * 109.47506 * 59.23906 * 10 9 8 12 12 O 1.21288 * 119.99867 * 6.13825 * 11 10 9 13 13 N 1.34775 * 120.00056 * 185.85983 * 11 10 9 14 14 C 1.37100 * 119.99990 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99847 * 359.97438 * 14 13 11 16 16 C 1.38946 * 119.99809 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00619 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99634 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47054 * 119.99939 * 18 16 14 21 21 H 1.48498 * 109.47128 * 239.99650 * 18 16 14 22 22 C 1.47903 * 105.82146 * 39.20659 * 9 8 6 23 23 C 1.53993 * 107.05807 * 334.67037 * 22 9 8 24 24 H 1.08997 * 110.31194 * 120.14135 * 23 22 9 25 25 O 1.42904 * 110.30970 * 242.30921 * 23 22 9 26 26 C 1.54265 * 110.03338 * 121.39424 * 2 1 3 27 27 C 1.54961 * 104.16010 * 95.75416 * 26 2 1 28 28 C 1.54880 * 102.77885 * 37.89116 * 27 26 2 29 29 C 1.53880 * 110.03203 * 238.60872 * 2 1 3 30 30 H 1.09000 * 109.47191 * 60.70609 * 1 2 3 31 31 H 1.09002 * 109.47288 * 180.69726 * 1 2 3 32 32 H 1.08994 * 109.47399 * 300.69995 * 1 2 3 33 33 H 0.97000 * 119.99479 * 0.02562 * 5 3 2 34 34 H 1.09003 * 110.66416 * 85.79246 * 8 6 5 35 35 H 1.08997 * 110.66414 * 322.66939 * 8 6 5 36 36 H 1.09007 * 109.47075 * 299.23907 * 10 9 8 37 37 H 1.09006 * 109.47209 * 179.24212 * 10 9 8 38 38 H 0.96998 * 120.00156 * 0.02562 * 13 11 10 39 39 H 0.96991 * 120.00544 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.91324 * 94.02029 * 22 9 8 41 41 H 1.08998 * 109.91963 * 215.31972 * 22 9 8 42 42 H 0.96699 * 113.99726 * 298.54754 * 25 23 22 43 43 H 1.09003 * 110.48804 * 214.40369 * 26 2 1 44 44 H 1.09002 * 110.48463 * 337.04065 * 26 2 1 45 45 H 1.08995 * 110.72309 * 279.56988 * 27 26 2 46 46 H 1.09004 * 110.91978 * 156.29740 * 27 26 2 47 47 H 1.08997 * 110.48975 * 203.40472 * 28 27 26 48 48 H 1.08999 * 110.60204 * 80.81503 * 28 27 26 49 49 H 1.08998 * 110.03212 * 359.95768 * 29 2 1 50 50 H 1.09004 * 110.02722 * 121.32936 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4159 0.0000 4 8 2.7572 1.8022 -0.9030 5 7 1.7165 2.2531 1.0037 6 6 2.2184 3.6294 1.0039 7 1 2.3312 3.9976 -0.0158 8 6 3.5581 3.7243 1.7766 9 7 3.6064 5.1473 2.1997 10 6 4.5315 5.3306 3.3258 11 6 5.9124 4.8844 2.9194 12 8 6.1318 4.5612 1.7711 13 7 6.9049 4.8498 3.8306 14 6 8.1612 4.4444 3.4607 15 1 8.3555 4.1523 2.4392 16 6 9.1842 4.4083 4.4002 17 7 8.9478 4.7631 5.6432 18 14 10.8959 3.8551 3.8964 19 1 10.8997 3.5107 2.4519 20 1 11.8644 4.9527 4.1466 21 1 11.2842 2.6618 4.6903 22 6 2.2232 5.5000 2.5871 23 6 1.2834 4.5525 1.8187 24 1 0.6855 3.9654 2.5156 25 8 0.4357 5.2979 0.9423 26 6 2.0585 -0.7550 1.2371 27 6 2.3298 -2.1897 0.7183 28 6 2.8885 -1.9396 -0.7044 29 6 2.0571 -0.7530 -1.2341 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3634 -1.0276 0.0125 32 1 -0.3634 0.5246 0.8836 33 1 1.1478 1.9441 1.7261 34 1 4.3972 3.4889 1.1219 35 1 3.5492 3.0650 2.6445 36 1 4.1928 4.7364 4.1747 37 1 4.5579 6.3835 3.6068 38 1 6.7303 5.1118 4.7481 39 1 9.6620 4.7383 6.2989 40 1 2.0920 5.3631 3.6604 41 1 2.0131 6.5339 2.3133 42 1 -0.1430 5.9263 1.3953 43 1 2.9806 -0.2989 1.5973 44 1 1.3058 -0.7695 2.0255 45 1 1.4053 -2.7654 0.6747 46 1 3.0688 -2.6952 1.3402 47 1 2.7416 -2.8186 -1.3320 48 1 3.9452 -1.6756 -0.6606 49 1 1.2229 -1.1191 -1.8326 50 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195058984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -122.609743 kcal Electronic energy + Delta-G solvation = -30679.296669 eV Core-core repulsion = 26512.903221 eV Total energy + Delta-G solvation = -4166.393449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.69788 -39.46585 -37.99240 -37.27826 -35.78029 -34.49673 -33.83593 -31.76504 -31.24912 -29.98486 -28.87175 -28.02843 -26.48919 -25.77721 -24.25682 -22.47614 -21.36060 -21.01489 -20.73032 -19.35252 -19.18425 -17.89280 -17.43808 -17.19165 -16.37996 -16.14767 -15.51359 -15.33332 -15.11824 -14.82664 -14.42596 -14.29703 -14.21086 -13.94533 -13.84522 -13.47967 -13.29847 -13.05450 -12.88340 -12.85874 -12.67452 -12.21244 -11.94237 -11.84768 -11.64666 -11.51322 -11.36075 -11.29903 -11.22182 -11.08088 -11.00714 -10.90451 -10.66921 -10.64642 -10.35810 -10.31332 -10.21259 -9.62729 -9.50099 -9.10456 -8.46023 -8.06291 -7.93923 -6.42095 -3.82624 2.64783 2.98067 3.16609 3.27440 3.35394 3.88975 3.94092 4.02124 4.20291 4.25285 4.32166 4.43434 4.61587 4.66639 4.83213 4.91526 4.99321 5.05532 5.06393 5.17280 5.23486 5.28759 5.33634 5.39607 5.42173 5.49580 5.53627 5.58470 5.60745 5.68184 5.74698 5.76946 5.81328 5.87602 5.92360 6.00676 6.08784 6.15080 6.21645 6.24582 6.39985 6.53681 7.06278 7.15057 7.43263 7.44356 7.55837 8.06234 8.22892 8.61315 9.18310 9.53478 10.05451 10.75764 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.003122 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.962354 B = 8967.312224 C =11080.125017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 C 0.525 3.475 4 O -0.526 6.526 5 N -0.720 5.720 6 C 0.147 3.853 7 H 0.115 0.885 8 C 0.035 3.965 9 N -0.486 5.486 10 C 0.037 3.963 11 C 0.441 3.559 12 O -0.574 6.574 13 N -0.564 5.564 14 C -0.297 4.297 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.928 3.072 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.004 3.996 23 C 0.090 3.910 24 H 0.064 0.936 25 O -0.554 6.554 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.116 4.116 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.396 0.604 34 H 0.117 0.883 35 H 0.042 0.958 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.378 0.622 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.639 -8.689 -2.920 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C 0.311 3.689 4 O -0.401 6.401 5 N -0.371 5.371 6 C 0.041 3.959 7 H 0.133 0.867 8 C -0.093 4.093 9 N -0.210 5.210 10 C -0.095 4.095 11 C 0.226 3.774 12 O -0.457 6.457 13 N -0.201 5.201 14 C -0.427 4.427 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.125 4.125 23 C 0.030 3.970 24 H 0.082 0.918 25 O -0.359 6.359 26 C -0.152 4.152 27 C -0.159 4.159 28 C -0.162 4.162 29 C -0.153 4.153 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.230 0.770 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.225 0.775 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.333 -8.627 -5.082 22.665 hybrid contribution -0.056 -0.234 2.215 2.228 sum -20.389 -8.861 -2.867 22.415 Atomic orbital electron populations 1.21870 0.92384 1.02655 1.02294 1.21424 0.96953 0.92010 0.98274 1.20505 0.79954 0.87143 0.81294 1.90717 1.36599 1.76832 1.35912 1.45871 1.53085 1.12017 1.26176 1.21881 0.91631 0.80004 1.02369 0.86690 1.23702 0.98043 0.88388 0.99215 1.64492 1.03644 1.20069 1.32835 1.22125 0.93399 1.02201 0.91741 1.19680 0.85774 0.85201 0.86727 1.90526 1.82935 1.53154 1.19104 1.41857 1.08750 1.58560 1.10895 1.19764 0.84757 1.40655 0.97487 0.87818 1.25251 1.00221 0.97538 0.94922 1.69612 1.34153 1.48382 1.02273 0.85810 0.81506 0.78132 0.78994 1.19153 1.20721 1.20783 1.23689 0.90022 1.00758 0.98052 1.22870 0.90778 0.92252 0.91102 0.91804 1.86607 1.55656 1.57090 1.36568 1.22484 1.01476 0.95691 0.95589 1.22478 1.00888 0.95998 0.96564 1.22363 1.00107 0.97760 0.96018 1.22244 1.00170 0.96932 0.95993 0.92010 0.91354 0.92369 0.76973 0.86450 0.94016 0.93407 0.88909 0.77541 0.91948 0.93086 0.89208 0.77506 0.90814 0.90886 0.91420 0.91258 0.91577 0.91275 0.91394 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.04 37.16 0.30 -0.70 16 2 C -0.08 -0.83 0.78 -154.54 -0.12 -0.95 16 3 C 0.53 7.19 6.36 -10.98 -0.07 7.12 16 4 O -0.53 -9.66 14.85 5.56 0.08 -9.57 16 5 N -0.72 -8.54 5.01 -52.00 -0.26 -8.80 16 6 C 0.15 2.11 3.17 -66.07 -0.21 1.90 16 7 H 0.12 2.05 7.49 -51.93 -0.39 1.66 16 8 C 0.04 0.61 5.27 -1.89 -0.01 0.60 16 9 N -0.49 -8.26 5.11 -231.89 -1.18 -9.45 16 10 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 11 C 0.44 10.52 7.41 -10.99 -0.08 10.44 16 12 O -0.57 -15.82 13.87 5.55 0.08 -15.74 16 13 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 14 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 15 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 18 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.00 0.05 6.51 -2.75 -0.02 0.03 16 23 C 0.09 0.99 4.10 -25.37 -0.10 0.89 16 24 H 0.06 0.54 7.75 -51.93 -0.40 0.13 16 25 O -0.55 -6.02 13.26 -35.23 -0.47 -6.49 16 26 C -0.11 -1.02 5.84 -25.03 -0.15 -1.16 16 27 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 28 C -0.12 -1.17 6.83 -25.08 -0.17 -1.34 16 29 C -0.12 -1.21 6.06 -25.61 -0.16 -1.37 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.36 7.55 -51.93 -0.39 -0.03 16 33 H 0.40 3.41 7.78 -40.82 -0.32 3.10 16 34 H 0.12 2.60 6.43 -51.93 -0.33 2.26 16 35 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 36 H 0.05 0.76 7.99 -51.92 -0.41 0.34 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.05 0.52 7.68 -51.93 -0.40 0.13 16 41 H 0.09 1.01 7.96 -51.93 -0.41 0.60 16 42 H 0.38 2.23 9.11 45.56 0.41 2.64 16 43 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 44 H 0.07 0.50 7.84 -51.93 -0.41 0.09 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 50 H 0.09 1.21 6.39 -51.93 -0.33 0.88 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -35.15 396.91 -8.75 -43.90 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.40 Total: 15.25 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.22 Total: 6.93 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.78 Total: -56.50 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.31 Total: -31.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.15 -8.75 -43.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195058984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.706 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds