Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 110.01639 * 2 1 4 4 O 1.21280 * 120.00638 * 239.29830 * 3 2 1 5 5 N 1.34785 * 120.00118 * 59.29818 * 3 2 1 6 6 C 1.46493 * 120.00133 * 179.97438 * 5 3 2 7 7 H 1.09001 * 110.64799 * 31.84812 * 6 5 3 8 8 C 1.54945 * 110.72461 * 268.50067 * 6 5 3 9 9 N 1.48535 * 103.22737 * 204.23057 * 8 6 5 10 10 C 1.46892 * 110.99896 * 159.72446 * 9 8 6 11 11 C 1.50701 * 109.47506 * 59.23906 * 10 9 8 12 12 O 1.21288 * 119.99867 * 6.13825 * 11 10 9 13 13 N 1.34775 * 120.00056 * 185.85983 * 11 10 9 14 14 C 1.37100 * 119.99990 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99847 * 359.97438 * 14 13 11 16 16 C 1.38946 * 119.99809 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00619 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99634 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47391 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47054 * 119.99939 * 18 16 14 21 21 H 1.48498 * 109.47128 * 239.99650 * 18 16 14 22 22 C 1.47903 * 105.82146 * 39.20659 * 9 8 6 23 23 C 1.53993 * 107.05807 * 334.67037 * 22 9 8 24 24 H 1.08997 * 110.31194 * 120.14135 * 23 22 9 25 25 O 1.42904 * 110.30970 * 242.30921 * 23 22 9 26 26 C 1.54265 * 110.03338 * 121.39424 * 2 1 3 27 27 C 1.54961 * 104.16010 * 95.75416 * 26 2 1 28 28 C 1.54880 * 102.77885 * 37.89116 * 27 26 2 29 29 C 1.53880 * 110.03203 * 238.60872 * 2 1 3 30 30 H 1.09000 * 109.47191 * 60.70609 * 1 2 3 31 31 H 1.09002 * 109.47288 * 180.69726 * 1 2 3 32 32 H 1.08994 * 109.47399 * 300.69995 * 1 2 3 33 33 H 0.97000 * 119.99479 * 0.02562 * 5 3 2 34 34 H 1.09003 * 110.66416 * 85.79246 * 8 6 5 35 35 H 1.08997 * 110.66414 * 322.66939 * 8 6 5 36 36 H 1.09007 * 109.47075 * 299.23907 * 10 9 8 37 37 H 1.09006 * 109.47209 * 179.24212 * 10 9 8 38 38 H 0.96998 * 120.00156 * 0.02562 * 13 11 10 39 39 H 0.96991 * 120.00544 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.91324 * 94.02029 * 22 9 8 41 41 H 1.08998 * 109.91963 * 215.31972 * 22 9 8 42 42 H 0.96699 * 113.99726 * 298.54754 * 25 23 22 43 43 H 1.09003 * 110.48804 * 214.40369 * 26 2 1 44 44 H 1.09002 * 110.48463 * 337.04065 * 26 2 1 45 45 H 1.08995 * 110.72309 * 279.56988 * 27 26 2 46 46 H 1.09004 * 110.91978 * 156.29740 * 27 26 2 47 47 H 1.08997 * 110.48975 * 203.40472 * 28 27 26 48 48 H 1.08999 * 110.60204 * 80.81503 * 28 27 26 49 49 H 1.08998 * 110.03212 * 359.95768 * 29 2 1 50 50 H 1.09004 * 110.02722 * 121.32936 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0458 1.4159 0.0000 4 8 2.7572 1.8022 -0.9030 5 7 1.7165 2.2531 1.0037 6 6 2.2184 3.6294 1.0039 7 1 2.3312 3.9976 -0.0158 8 6 3.5581 3.7243 1.7766 9 7 3.6064 5.1473 2.1997 10 6 4.5315 5.3306 3.3258 11 6 5.9124 4.8844 2.9194 12 8 6.1318 4.5612 1.7711 13 7 6.9049 4.8498 3.8306 14 6 8.1612 4.4444 3.4607 15 1 8.3555 4.1523 2.4392 16 6 9.1842 4.4083 4.4002 17 7 8.9478 4.7631 5.6432 18 14 10.8959 3.8551 3.8964 19 1 10.8997 3.5107 2.4519 20 1 11.8644 4.9527 4.1466 21 1 11.2842 2.6618 4.6903 22 6 2.2232 5.5000 2.5871 23 6 1.2834 4.5525 1.8187 24 1 0.6855 3.9654 2.5156 25 8 0.4357 5.2979 0.9423 26 6 2.0585 -0.7550 1.2371 27 6 2.3298 -2.1897 0.7183 28 6 2.8885 -1.9396 -0.7044 29 6 2.0571 -0.7530 -1.2341 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3634 -1.0276 0.0125 32 1 -0.3634 0.5246 0.8836 33 1 1.1478 1.9441 1.7261 34 1 4.3972 3.4889 1.1219 35 1 3.5492 3.0650 2.6445 36 1 4.1928 4.7364 4.1747 37 1 4.5579 6.3835 3.6068 38 1 6.7303 5.1118 4.7481 39 1 9.6620 4.7383 6.2989 40 1 2.0920 5.3631 3.6604 41 1 2.0131 6.5339 2.3133 42 1 -0.1430 5.9263 1.3953 43 1 2.9806 -0.2989 1.5973 44 1 1.3058 -0.7695 2.0255 45 1 1.4053 -2.7654 0.6747 46 1 3.0688 -2.6952 1.3402 47 1 2.7416 -2.8186 -1.3320 48 1 3.9452 -1.6756 -0.6606 49 1 1.2229 -1.1191 -1.8326 50 1 2.6853 -0.0940 -1.8334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195058984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -153.455821 kcal Electronic energy + Delta-G solvation = -30680.634256 eV Core-core repulsion = 26512.903221 eV Total energy + Delta-G solvation = -4167.731035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.74503 -40.73993 -39.60137 -38.26183 -36.88469 -35.96745 -35.57853 -33.34271 -32.56161 -31.15082 -29.66212 -29.13629 -28.02590 -26.57653 -25.97050 -23.57114 -22.52333 -22.02544 -21.55013 -21.06800 -20.26384 -19.91634 -18.37779 -18.12809 -17.83008 -17.46653 -16.68028 -16.49125 -16.41654 -16.20926 -15.89885 -15.68507 -15.59690 -15.13227 -14.75113 -14.68758 -14.51789 -14.28193 -14.22944 -13.66148 -13.54166 -13.43031 -13.34942 -13.17321 -13.04857 -12.97751 -12.61122 -12.51853 -12.44504 -12.15714 -12.06701 -12.00208 -11.83609 -11.73969 -11.63297 -11.51877 -11.43104 -11.16918 -10.70458 -10.35506 -10.20842 -10.03104 -9.39210 -8.50147 -5.98485 1.32997 1.38566 1.52686 1.56818 1.95795 2.01277 2.26137 2.79357 3.08218 3.16653 3.29349 3.43264 3.53597 3.54951 3.71110 3.78226 3.93626 4.11720 4.14517 4.23896 4.31535 4.35307 4.39047 4.39520 4.47545 4.47942 4.52090 4.61362 4.72754 4.81290 4.88767 4.90521 4.93611 4.99744 5.01605 5.06378 5.11449 5.20126 5.28146 5.35287 5.38106 5.41787 5.44430 5.73691 5.87835 6.05077 6.46592 6.57785 6.90051 7.10445 7.21172 7.52485 8.09979 8.67452 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.003122 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.962354 B = 8967.312224 C =11080.125017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 C 0.515 3.485 4 O -0.586 6.586 5 N -0.703 5.703 6 C 0.150 3.850 7 H 0.070 0.930 8 C 0.043 3.957 9 N -0.515 5.515 10 C 0.051 3.949 11 C 0.435 3.565 12 O -0.619 6.619 13 N -0.571 5.571 14 C -0.333 4.333 15 H 0.073 0.927 16 C -0.009 4.009 17 N -0.917 5.917 18 Si 0.989 3.011 19 H -0.278 1.278 20 H -0.268 1.268 21 H -0.268 1.268 22 C 0.005 3.995 23 C 0.107 3.893 24 H 0.108 0.892 25 O -0.572 6.572 26 C -0.113 4.113 27 C -0.115 4.115 28 C -0.128 4.128 29 C -0.120 4.120 30 H 0.051 0.949 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.417 0.583 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.397 0.603 39 H 0.279 0.721 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.402 0.598 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.042 0.958 49 H 0.088 0.912 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 -9.463 -0.267 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C 0.303 3.697 4 O -0.465 6.465 5 N -0.355 5.355 6 C 0.043 3.957 7 H 0.088 0.912 8 C -0.086 4.086 9 N -0.241 5.241 10 C -0.080 4.080 11 C 0.222 3.778 12 O -0.505 6.505 13 N -0.209 5.209 14 C -0.463 4.463 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.558 5.558 18 Si 0.813 3.187 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.123 4.123 23 C 0.047 3.953 24 H 0.126 0.874 25 O -0.381 6.381 26 C -0.151 4.151 27 C -0.152 4.152 28 C -0.165 4.165 29 C -0.158 4.158 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.135 0.865 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.253 0.747 43 H 0.063 0.937 44 H 0.124 0.876 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.472 -9.380 -2.352 25.386 hybrid contribution 0.904 0.056 1.319 1.600 sum -22.568 -9.324 -1.033 24.440 Atomic orbital electron populations 1.21892 0.89510 1.04471 1.02849 1.21490 0.99019 0.89015 0.98548 1.21388 0.78932 0.88753 0.80592 1.90698 1.39311 1.78187 1.38342 1.45700 1.52536 1.10926 1.26336 1.21548 0.91910 0.82083 1.00146 0.91160 1.23356 0.97480 0.89244 0.98553 1.64362 1.06648 1.19622 1.33432 1.22014 0.89542 1.03753 0.92737 1.20855 0.87806 0.83361 0.85766 1.90522 1.84218 1.54604 1.21201 1.41894 1.08488 1.59064 1.11421 1.19637 0.86830 1.43109 0.96731 0.90908 1.25970 1.03223 0.96928 0.94796 1.69654 1.35444 1.48022 1.02702 0.84929 0.77287 0.78420 0.78048 1.20334 1.19332 1.19281 1.23842 0.86741 1.01540 1.00153 1.22733 0.90542 0.91626 0.90398 0.87421 1.86565 1.56057 1.57932 1.37549 1.22519 1.01093 0.95718 0.95755 1.22492 1.02077 0.95671 0.95005 1.22378 0.98463 0.97888 0.97784 1.22267 1.00420 0.96770 0.96318 0.92939 0.88898 0.90365 0.74513 0.92855 0.93211 0.90388 0.86495 0.76848 0.91194 0.89736 0.88110 0.74659 0.93655 0.87588 0.88672 0.91051 0.89796 0.93953 0.89358 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.04 71.98 0.58 -0.97 16 2 C -0.08 -1.50 0.78 -52.20 -0.04 -1.54 16 3 C 0.52 14.86 6.36 87.65 0.56 15.41 16 4 O -0.59 -23.96 14.85 -3.03 -0.04 -24.01 16 5 N -0.70 -16.47 5.01 -436.83 -2.19 -18.66 16 6 C 0.15 4.39 3.17 46.20 0.15 4.54 16 7 H 0.07 2.72 7.49 -2.39 -0.02 2.70 16 8 C 0.04 1.56 5.27 86.65 0.46 2.01 16 9 N -0.52 -17.34 5.11 -887.55 -4.53 -21.87 16 10 C 0.05 1.76 5.30 85.56 0.45 2.21 16 11 C 0.43 21.49 7.41 87.66 0.65 22.14 16 12 O -0.62 -36.59 13.87 -3.05 -0.04 -36.63 16 13 N -0.57 -29.91 5.29 -306.99 -1.62 -31.54 16 14 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 15 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 16 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 17 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 18 Si 0.99 44.03 29.55 68.60 2.03 46.05 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C 0.00 0.10 6.51 86.45 0.56 0.67 16 23 C 0.11 2.04 4.10 31.47 0.13 2.17 16 24 H 0.11 1.20 7.75 -2.39 -0.02 1.18 16 25 O -0.57 -10.87 13.26 -148.98 -1.97 -12.85 16 26 C -0.11 -1.83 5.84 31.69 0.18 -1.65 16 27 C -0.12 -1.64 6.91 31.91 0.22 -1.42 16 28 C -0.13 -2.41 6.83 31.67 0.22 -2.19 16 29 C -0.12 -2.60 6.06 31.32 0.19 -2.41 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.63 7.55 -2.39 -0.02 0.61 16 33 H 0.42 6.07 7.78 -92.71 -0.72 5.35 16 34 H 0.05 2.62 6.43 -2.39 -0.02 2.60 16 35 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 36 H 0.08 2.25 7.99 -2.38 -0.02 2.23 16 37 H 0.12 3.52 8.14 -2.38 -0.02 3.50 16 38 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 39 H 0.28 14.02 8.31 -92.72 -0.77 13.25 16 40 H 0.08 1.27 7.68 -2.39 -0.02 1.25 16 41 H 0.10 1.92 7.96 -2.39 -0.02 1.90 16 42 H 0.40 3.18 9.11 -74.06 -0.67 2.50 16 43 H 0.04 0.99 7.85 -2.39 -0.02 0.97 16 44 H 0.11 1.03 7.84 -2.39 -0.02 1.01 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.09 1.50 7.67 -2.39 -0.02 1.49 16 50 H 0.05 1.52 6.39 -2.38 -0.02 1.50 16 Total: -1.00 -85.76 396.91 -3.66 -89.42 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -1.15 Total: 39.19 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.59 Total: 20.26 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -8.06 Total: -121.44 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -2.06 Total: -73.48 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -85.76 -3.66 -89.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195058984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.032 kcal (2) G-P(sol) polarization free energy of solvation -85.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds