Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00318 * 2 1 4 4 H 1.48505 * 109.47062 * 270.00012 * 3 2 1 5 5 H 1.48501 * 109.47127 * 29.99919 * 3 2 1 6 6 H 1.48504 * 109.47193 * 149.99817 * 3 2 1 7 7 C 1.38950 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99826 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00325 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00445 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99514 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00332 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.46980 * 174.87384 * 12 10 9 14 14 C 1.46262 * 111.00223 * 64.98545 * 13 12 10 15 15 C 1.47545 * 114.37673 * 148.55178 * 14 13 12 16 16 C 1.54945 * 109.68818 * 62.24337 * 15 14 13 17 17 N 1.44701 * 109.51265 * 290.43818 * 16 15 14 18 18 C 1.34775 * 118.59901 * 269.15162 * 17 16 15 19 19 O 1.21290 * 119.99992 * 5.44277 * 18 17 16 20 20 C 1.50699 * 120.00313 * 185.44364 * 18 17 16 21 21 H 1.09007 * 109.47768 * 309.42490 * 20 18 17 22 22 C 1.53086 * 109.48029 * 69.45701 * 20 18 17 23 23 C 1.53180 * 109.16597 * 177.59365 * 22 20 18 24 24 C 1.53180 * 109.03583 * 303.02402 * 23 22 20 25 25 C 1.53096 * 109.16389 * 56.97565 * 24 23 22 26 26 O 1.42896 * 109.48365 * 189.40475 * 20 18 17 27 27 C 1.47773 * 122.85543 * 89.15593 * 17 16 15 28 28 C 1.44761 * 111.00237 * 301.48591 * 13 12 10 29 29 H 0.97000 * 119.99524 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00078 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47188 * 54.87531 * 12 10 9 32 32 H 1.08997 * 109.47097 * 294.87474 * 12 10 9 33 33 H 1.09005 * 108.50051 * 27.28377 * 14 13 12 34 34 H 1.08999 * 108.37980 * 269.72917 * 14 13 12 35 35 H 1.08996 * 109.42818 * 182.29785 * 15 14 13 36 36 H 1.08996 * 109.42482 * 302.19042 * 15 14 13 37 37 H 1.08995 * 109.46285 * 50.50576 * 16 15 14 38 38 H 1.09000 * 109.46295 * 170.47927 * 16 15 14 39 39 H 1.09003 * 109.52780 * 297.50090 * 22 20 18 40 40 H 1.09002 * 109.52739 * 57.69135 * 22 20 18 41 41 H 1.08995 * 109.54643 * 183.15521 * 23 22 20 42 42 H 1.09000 * 109.61478 * 62.93076 * 23 22 20 43 43 H 1.08997 * 109.51874 * 297.07292 * 24 23 22 44 44 H 1.08998 * 109.52379 * 176.88129 * 24 23 22 45 45 H 1.08992 * 109.47948 * 182.40816 * 25 24 23 46 46 H 1.08999 * 109.47730 * 62.37698 * 25 24 23 47 47 H 1.09000 * 109.06551 * 197.57788 * 27 17 16 48 48 H 1.08996 * 109.06229 * 78.63905 * 27 17 16 49 49 H 1.08997 * 109.43573 * 337.92538 * 28 13 12 50 50 H 1.08999 * 109.43165 * 97.83944 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2035 0.0011 10 6 4.0537 -2.3707 0.0021 11 8 3.4471 -3.4211 0.0031 12 6 5.5607 -2.3708 0.0021 13 7 6.0502 -3.7501 0.1271 14 6 5.6805 -4.5457 -1.0433 15 6 6.6462 -5.6065 -1.3883 16 6 6.7427 -6.6235 -0.2233 17 7 7.3944 -6.0012 0.9089 18 6 8.7339 -6.1026 1.0180 19 8 9.3775 -6.6192 0.1291 20 6 9.4322 -5.5741 2.2445 21 1 9.1083 -4.5508 2.4345 22 6 9.0832 -6.4523 3.4489 23 6 9.8434 -5.9451 4.6782 24 6 11.3445 -5.9467 4.3730 25 6 11.6062 -5.0880 3.1328 26 8 10.8455 -5.5954 2.0347 27 6 6.6552 -5.2591 1.9512 28 6 5.5576 -4.3676 1.3402 29 1 -0.4849 0.8401 0.0004 30 1 3.8649 -0.3635 0.0014 31 1 5.9240 -1.7788 0.8421 32 1 5.9240 -1.9394 -0.9306 33 1 5.5809 -3.8771 -1.8985 34 1 4.7121 -5.0081 -0.8525 35 1 6.3142 -6.1195 -2.2908 36 1 7.6258 -5.1619 -1.5635 37 1 5.7409 -6.9430 0.0638 38 1 7.3220 -7.4893 -0.5441 39 1 8.0108 -6.4023 3.6377 40 1 9.3700 -7.4836 3.2432 41 1 9.6431 -6.5996 5.5264 42 1 9.5207 -4.9314 4.9155 43 1 11.6770 -6.9678 4.1858 44 1 11.8894 -5.5352 5.2226 45 1 12.6672 -5.1202 2.8858 46 1 11.3108 -4.0585 3.3348 47 1 7.3541 -4.6334 2.5062 48 1 6.1950 -5.9710 2.6364 49 1 5.2804 -3.5927 2.0548 50 1 4.6839 -4.9765 1.1082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195487501.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -96.827112 kcal Electronic energy + Delta-G solvation = -31273.115260 eV Core-core repulsion = 27107.839830 eV Total energy + Delta-G solvation = -4165.275430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77543 -39.54903 -38.61079 -37.12057 -34.98441 -34.02522 -33.77889 -33.16576 -31.80040 -31.42360 -29.34827 -27.13887 -26.10005 -25.03520 -24.23685 -23.92053 -22.12870 -20.79112 -20.54166 -19.48179 -19.15313 -18.31101 -17.46875 -16.91070 -16.17028 -16.04765 -15.84700 -15.50250 -15.25870 -14.98963 -14.84696 -14.70707 -14.31448 -14.19844 -13.95967 -13.49438 -13.37411 -13.09826 -12.99943 -12.97383 -12.73499 -12.49726 -12.21606 -12.02726 -11.87138 -11.64945 -11.51875 -11.38505 -11.32998 -11.11604 -11.01376 -10.75875 -10.70698 -10.66132 -10.41450 -10.09310 -9.77507 -9.65716 -9.51834 -9.27990 -8.55965 -8.28564 -7.74918 -6.41592 -3.93133 2.58206 2.77366 2.95150 3.00177 3.08887 3.59160 3.69216 4.01299 4.10243 4.29011 4.45571 4.46966 4.57057 4.62842 4.69663 4.77672 4.95889 5.04617 5.11126 5.12588 5.14001 5.21700 5.26031 5.33986 5.38176 5.44295 5.54860 5.57639 5.61521 5.66183 5.69990 5.73312 5.75597 5.82082 5.85858 5.91670 5.99409 6.01361 6.21740 6.31740 6.52923 6.66108 6.90231 7.17666 7.34817 7.38602 7.46672 8.03396 8.23064 8.46989 8.83633 9.31514 9.68966 10.71168 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002678 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.496723 B =10453.294566 C =11229.610500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.308 4.308 8 H 0.119 0.881 9 N -0.584 5.584 10 C 0.414 3.586 11 O -0.579 6.579 12 C 0.041 3.959 13 N -0.508 5.508 14 C 0.053 3.947 15 C -0.128 4.128 16 C 0.121 3.879 17 N -0.587 5.587 18 C 0.521 3.479 19 O -0.527 6.527 20 C 0.075 3.925 21 H 0.085 0.915 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.158 4.158 25 C 0.059 3.941 26 O -0.355 6.355 27 C 0.111 3.889 28 C 0.044 3.956 29 H 0.274 0.726 30 H 0.371 0.629 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.757 -8.495 8.525 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.136 0.864 9 N -0.222 5.222 10 C 0.199 3.801 11 O -0.463 6.463 12 C -0.090 4.090 13 N -0.230 5.230 14 C -0.074 4.074 15 C -0.167 4.167 16 C -0.002 4.002 17 N -0.321 5.321 18 C 0.308 3.692 19 O -0.402 6.402 20 C 0.014 3.986 21 H 0.102 0.898 22 C -0.186 4.186 23 C -0.158 4.158 24 C -0.196 4.196 25 C -0.018 4.018 26 O -0.273 6.273 27 C -0.012 4.012 28 C -0.085 4.085 29 H 0.085 0.915 30 H 0.204 0.796 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 20.052 -9.415 7.891 23.516 hybrid contribution -0.604 1.763 0.285 1.886 sum 19.449 -7.652 8.176 22.442 Atomic orbital electron populations 1.69626 1.05719 1.27671 1.48712 1.25080 0.95515 0.98126 0.97392 0.86664 0.79779 0.83907 0.79006 1.19545 1.20105 1.19412 1.19435 0.79408 0.96555 1.48285 0.86370 1.42368 1.07626 1.06479 1.65712 1.20994 0.89895 0.84642 0.84543 1.90526 1.69864 1.30671 1.55260 1.22278 0.92127 0.91128 1.03512 1.61284 1.57732 1.01252 1.02702 1.21008 0.97994 0.95762 0.92673 1.21350 1.00961 0.96789 0.97640 1.21448 0.97487 0.95503 0.85755 1.47471 1.05808 1.53484 1.25308 1.20064 0.82261 0.79514 0.87406 1.90691 1.64722 1.43940 1.40860 1.21938 0.83384 0.99784 0.93518 0.89789 1.22184 1.01619 1.00564 0.94209 1.21587 0.94874 1.01926 0.97454 1.22220 0.96893 1.01803 0.98689 1.22646 0.96429 0.96237 0.86471 1.88057 1.15174 1.84856 1.39249 1.22347 0.95387 0.94275 0.89228 1.22334 0.95415 0.98061 0.92733 0.91502 0.79597 0.89300 0.89147 0.92299 0.91862 0.90647 0.91234 0.90716 0.90188 0.89894 0.90522 0.90989 0.91402 0.90916 0.90719 0.88495 0.92992 0.90327 0.91490 0.90456 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.96 55.50 0.77 -24.21 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.75 27.74 -169.99 -4.71 14.04 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 7 C -0.31 -8.35 10.16 -14.94 -0.15 -8.50 16 8 H 0.12 3.69 7.39 -52.48 -0.39 3.30 16 9 N -0.58 -13.12 5.09 -10.96 -0.06 -13.17 16 10 C 0.41 8.57 7.07 -10.99 -0.08 8.49 16 11 O -0.58 -13.80 12.14 5.54 0.07 -13.74 16 12 C 0.04 0.64 5.49 -4.98 -0.03 0.61 16 13 N -0.51 -7.46 4.37 -241.05 -1.05 -8.51 16 14 C 0.05 0.81 4.03 -6.80 -0.03 0.78 16 15 C -0.13 -1.71 6.03 -28.34 -0.17 -1.88 16 16 C 0.12 1.52 5.40 -3.98 -0.02 1.50 16 17 N -0.59 -7.26 2.53 -172.20 -0.44 -7.70 16 18 C 0.52 7.27 6.96 -10.99 -0.08 7.19 16 19 O -0.53 -9.39 15.99 -14.18 -0.23 -9.62 16 20 C 0.07 0.83 2.21 -27.84 -0.06 0.77 16 21 H 0.08 0.84 6.63 -51.93 -0.34 0.49 16 22 C -0.15 -1.25 5.16 -26.59 -0.14 -1.39 16 23 C -0.12 -0.80 6.03 -26.55 -0.16 -0.96 16 24 C -0.16 -1.07 6.14 -26.59 -0.16 -1.23 16 25 C 0.06 0.49 6.84 37.21 0.25 0.75 16 26 O -0.36 -4.49 9.96 -54.96 -0.55 -5.04 16 27 C 0.11 1.18 5.03 -2.80 -0.01 1.16 16 28 C 0.04 0.61 4.24 -4.43 -0.02 0.59 16 29 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.37 7.37 5.76 -40.82 -0.24 7.14 16 31 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 33 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 34 H 0.06 1.11 5.84 -51.93 -0.30 0.80 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 39 H 0.08 0.61 6.12 -51.93 -0.32 0.29 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.72 5.38 -51.93 -0.28 0.44 16 48 H 0.07 0.59 7.66 -51.93 -0.40 0.20 16 49 H 0.08 1.08 7.46 -51.93 -0.39 0.69 16 50 H 0.07 1.14 6.18 -51.93 -0.32 0.82 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -33.57 377.74 -9.42 -42.99 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.97 Total: 10.37 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.95 Total: 8.90 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.77 Total: -53.59 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.71 Total: -28.40 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.57 -9.42 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195487501.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.842 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds