Wall clock time and date at job start Sat Apr 11 2020 05:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.84940 * 2 1 4 4 C 1.53782 * 113.61290 * 131.19558 * 2 1 3 5 5 C 1.53778 * 87.08060 * 139.97936 * 4 2 1 6 6 C 1.53780 * 87.08302 * 334.56695 * 5 4 2 7 7 H 1.08990 * 113.61517 * 139.98087 * 6 5 4 8 8 C 1.50703 * 113.61214 * 270.88730 * 6 5 4 9 9 O 1.21273 * 120.00071 * 65.49380 * 8 6 5 10 10 N 1.34776 * 119.99563 * 245.49285 * 8 6 5 11 11 C 1.46505 * 120.00062 * 179.97438 * 10 8 6 12 12 H 1.09004 * 110.28438 * 32.87867 * 11 10 8 13 13 C 1.54375 * 110.32656 * 270.64492 * 11 10 8 14 14 N 1.48563 * 104.59186 * 217.25098 * 13 11 10 15 15 C 1.46901 * 110.99986 * 159.03848 * 14 13 11 16 16 C 1.50703 * 109.46840 * 60.10420 * 15 14 13 17 17 O 1.21287 * 120.00535 * 9.35400 * 16 15 14 18 18 N 1.34778 * 119.99707 * 189.35430 * 16 15 14 19 19 C 1.37102 * 119.99981 * 180.02562 * 18 16 15 20 20 H 1.07993 * 120.00131 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99841 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47350 * 60.00104 * 23 21 19 25 25 H 1.48503 * 109.46905 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47313 * 299.99565 * 23 21 19 27 27 C 1.48554 * 104.22308 * 39.48002 * 14 13 11 28 28 C 1.54253 * 110.32126 * 155.00072 * 11 10 8 29 29 H 1.08994 * 110.33055 * 0.02562 * 28 11 10 30 30 O 1.42906 * 110.32690 * 237.79372 * 28 11 10 31 31 H 1.09000 * 109.47271 * 324.09800 * 1 2 3 32 32 H 1.09005 * 109.47398 * 204.10174 * 1 2 3 33 33 H 1.08998 * 109.47357 * 84.09772 * 1 2 3 34 34 H 1.08998 * 109.47293 * 50.33169 * 3 2 1 35 35 H 1.09000 * 109.47168 * 170.33384 * 3 2 1 36 36 H 1.09004 * 109.46823 * 290.33306 * 3 2 1 37 37 H 1.09005 * 113.61065 * 254.52942 * 4 2 1 38 38 H 1.08997 * 113.61471 * 25.42841 * 4 2 1 39 39 H 1.08999 * 113.61197 * 89.11552 * 5 4 2 40 40 H 1.09000 * 113.61625 * 219.92957 * 5 4 2 41 41 H 0.97003 * 120.00343 * 0.02562 * 10 8 6 42 42 H 1.09002 * 110.41110 * 336.02242 * 13 11 10 43 43 H 1.08996 * 110.41392 * 98.46764 * 13 11 10 44 44 H 1.08997 * 109.47140 * 180.09851 * 15 14 13 45 45 H 1.09000 * 109.47294 * 300.10787 * 15 14 13 46 46 H 0.97001 * 120.00346 * 0.02562 * 18 16 15 47 47 H 0.97005 * 120.00216 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.41114 * 201.74016 * 27 14 13 49 49 H 1.09003 * 110.41615 * 79.29805 * 27 14 13 50 50 H 0.96692 * 114.00479 * 180.02562 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 3.1923 -1.3136 0.0013 6 6 2.1460 -0.9301 -1.0584 7 1 2.5650 -0.4008 -1.9141 8 6 1.2452 -2.0705 -1.4576 9 8 0.4796 -2.5503 -0.6487 10 7 1.2904 -2.5569 -2.7137 11 6 0.4151 -3.6658 -3.1018 12 1 -0.5309 -3.6067 -2.5636 13 6 1.1078 -5.0176 -2.8259 14 7 0.6972 -5.8867 -3.9587 15 6 1.6291 -7.0100 -4.1251 16 6 1.6480 -7.8377 -2.8659 17 8 0.8359 -7.6278 -1.9898 18 7 2.5674 -8.8113 -2.7133 19 6 2.5843 -9.5648 -1.5680 20 1 1.8612 -9.3778 -0.7879 21 6 3.5325 -10.5682 -1.4104 22 7 4.4127 -10.7953 -2.3594 23 14 3.5560 -11.5942 0.1503 24 1 2.2582 -12.3007 0.2979 25 1 4.6549 -12.5900 0.0716 26 1 3.7733 -10.7082 1.3221 27 6 0.7316 -4.9868 -5.1402 28 6 0.1676 -3.6455 -4.6242 29 1 0.6976 -2.8108 -5.0829 30 8 -1.2321 -3.5573 -4.8984 31 1 -0.3634 0.8324 0.6026 32 1 -0.3634 -0.9381 0.4197 33 1 -0.3634 0.1057 -1.0222 34 1 1.6607 1.9995 0.7910 35 1 3.1988 1.3514 0.1726 36 1 1.9361 1.8834 -0.9637 37 1 2.5650 -0.3969 1.9150 38 1 1.4945 -1.7522 1.3507 39 1 4.0710 -0.6687 0.0007 40 1 3.4454 -2.3738 0.0033 41 1 1.9030 -2.1734 -3.3607 42 1 2.1908 -4.8945 -2.8144 43 1 0.7619 -5.4361 -1.8808 44 1 1.3061 -7.6291 -4.9620 45 1 2.6299 -6.6257 -4.3223 46 1 3.2171 -8.9790 -3.4137 47 1 5.0744 -11.4961 -2.2496 48 1 0.1023 -5.3822 -5.9376 49 1 1.7557 -4.8588 -5.4909 50 1 -1.4480 -3.5412 -5.8408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195517983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:20 Heat of formation + Delta-G solvation = -88.720754 kcal Electronic energy + Delta-G solvation = -30578.861256 eV Core-core repulsion = 26413.937344 eV Total energy + Delta-G solvation = -4164.923912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11279 -39.69205 -38.11481 -37.48523 -35.67996 -34.43349 -33.80755 -31.29555 -31.03376 -30.19513 -28.33796 -27.61055 -26.91560 -25.95537 -24.21000 -22.80325 -21.62691 -21.26648 -20.68556 -19.16529 -18.72209 -17.87388 -17.49861 -16.81251 -16.18826 -16.05096 -15.42634 -15.15344 -15.13200 -14.93714 -14.59758 -14.52166 -14.12496 -13.91604 -13.87513 -13.42423 -13.16033 -13.09684 -12.90388 -12.76904 -12.49521 -12.33271 -12.09793 -11.91127 -11.74157 -11.54150 -11.50625 -11.32507 -11.22357 -11.19233 -10.99728 -10.67347 -10.42779 -10.34761 -10.25431 -10.23314 -10.16877 -9.60017 -9.46884 -9.13937 -8.46875 -8.08214 -7.93703 -6.40999 -3.81555 2.53674 2.90080 3.21542 3.26771 3.31886 3.89996 4.02025 4.06721 4.17899 4.25517 4.39069 4.39670 4.59159 4.62794 4.66218 4.87724 4.93485 5.02726 5.07424 5.22326 5.24637 5.36413 5.38152 5.43733 5.45202 5.47017 5.51986 5.64538 5.67061 5.69871 5.74375 5.77082 5.83526 5.88549 5.92349 6.04943 6.14535 6.23524 6.25764 6.35043 6.44022 6.51287 7.03562 7.14231 7.40141 7.52355 7.56334 8.06819 8.21110 8.62471 9.19101 9.54525 10.06730 10.76752 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.002929 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.292875 B = 9558.346155 C =11467.356393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.131 4.131 5 C -0.122 4.122 6 C -0.132 4.132 7 H 0.090 0.910 8 C 0.534 3.466 9 O -0.519 6.519 10 N -0.723 5.723 11 C 0.145 3.855 12 H 0.113 0.887 13 C 0.033 3.967 14 N -0.477 5.477 15 C 0.035 3.965 16 C 0.441 3.559 17 O -0.574 6.574 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.002 4.002 28 C 0.099 3.901 29 H 0.065 0.935 30 O -0.550 6.550 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.396 0.604 42 H 0.042 0.958 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.391 0.609 47 H 0.272 0.728 48 H 0.089 0.911 49 H 0.050 0.950 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 23.425 -5.691 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.184 4.184 4 C -0.168 4.168 5 C -0.160 4.160 6 C -0.153 4.153 7 H 0.108 0.892 8 C 0.320 3.680 9 O -0.394 6.394 10 N -0.376 5.376 11 C 0.040 3.960 12 H 0.131 0.869 13 C -0.096 4.096 14 N -0.201 5.201 15 C -0.097 4.097 16 C 0.226 3.774 17 O -0.457 6.457 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.131 4.131 28 C 0.039 3.961 29 H 0.083 0.917 30 O -0.355 6.355 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.230 0.770 42 H 0.060 0.940 43 H 0.132 0.868 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.331 22.809 -3.768 23.235 hybrid contribution 1.878 -0.295 -1.116 2.204 sum -0.453 22.513 -4.884 23.042 Atomic orbital electron populations 1.21900 0.93468 1.03074 1.01453 1.21632 0.96025 0.93798 0.95099 1.21620 1.00572 0.94244 1.01990 1.23164 0.97877 0.99575 0.96200 1.22738 0.96141 1.02285 0.94863 1.22571 0.97908 0.96023 0.98821 0.89192 1.20001 0.83119 0.83262 0.81629 1.90698 1.38958 1.59664 1.50070 1.46028 1.42221 1.36382 1.12943 1.21635 0.95316 0.85614 0.93440 0.86896 1.23587 0.97373 0.90541 0.98096 1.65207 1.47005 1.06155 1.01720 1.22112 0.94400 0.93999 0.99189 1.19681 0.84676 0.84249 0.88788 1.90531 1.40887 1.70654 1.43649 1.41854 1.29029 1.30222 1.18958 1.19663 1.15088 1.11904 0.96113 0.87939 1.25251 0.95716 0.97953 0.98982 1.69603 1.18343 1.33154 1.33384 0.85922 0.77854 0.79195 0.81301 1.19844 1.20987 1.19879 1.23926 1.00145 0.93496 0.95536 1.22665 0.82821 0.95497 0.95162 0.91742 1.86596 1.22304 1.96770 1.29809 0.93116 0.90051 0.93299 0.91960 0.92312 0.92390 0.91558 0.88502 0.89287 0.90805 0.76962 0.93971 0.86847 0.88905 0.93483 0.77548 0.91850 0.89289 0.93175 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.11 37.16 0.30 -1.23 16 2 C -0.06 -0.61 1.33 -153.69 -0.20 -0.82 16 3 C -0.13 -0.89 9.03 37.16 0.34 -0.55 16 4 C -0.13 -1.36 6.78 -25.92 -0.18 -1.53 16 5 C -0.12 -1.17 7.31 -25.92 -0.19 -1.36 16 6 C -0.13 -1.27 3.86 -90.96 -0.35 -1.62 16 7 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 8 C 0.53 6.90 6.48 -10.98 -0.07 6.83 16 9 O -0.52 -8.77 12.63 5.56 0.07 -8.70 16 10 N -0.72 -8.22 5.06 -52.47 -0.27 -8.48 16 11 C 0.15 2.06 3.22 -66.55 -0.21 1.84 16 12 H 0.11 1.96 7.40 -51.93 -0.38 1.58 16 13 C 0.03 0.57 5.28 -2.18 -0.01 0.56 16 14 N -0.48 -8.16 5.18 -231.41 -1.20 -9.36 16 15 C 0.03 0.63 5.40 -4.97 -0.03 0.60 16 16 C 0.44 10.63 7.36 -10.98 -0.08 10.55 16 17 O -0.57 -15.98 14.10 5.55 0.08 -15.90 16 18 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 23 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.00 -0.03 6.23 -2.18 -0.01 -0.04 16 28 C 0.10 1.09 4.18 -25.35 -0.11 0.98 16 29 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 30 O -0.55 -6.37 13.26 -35.23 -0.47 -6.84 16 31 H 0.05 0.47 7.98 -51.93 -0.41 0.06 16 32 H 0.08 1.09 5.94 -51.93 -0.31 0.78 16 33 H 0.05 0.53 8.03 -51.93 -0.42 0.12 16 34 H 0.06 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.10 1.26 6.81 -51.93 -0.35 0.90 16 39 H 0.09 0.66 7.64 -51.93 -0.40 0.27 16 40 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.40 3.15 8.35 -40.82 -0.34 2.81 16 42 H 0.04 0.72 7.88 -51.93 -0.41 0.31 16 43 H 0.11 2.52 6.58 -51.93 -0.34 2.18 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.05 0.76 7.97 -51.93 -0.41 0.34 16 46 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 49 H 0.05 0.52 7.91 -51.93 -0.41 0.10 16 50 H 0.38 2.47 9.12 45.56 0.42 2.88 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -35.02 395.92 -8.56 -43.58 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -7.33 Total: 15.75 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.05 Total: 6.15 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.80 Total: -56.38 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.32 Total: -31.43 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.02 -8.56 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195517983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.145 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds