Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.84940 * 2 1 4 4 C 1.53782 * 113.61290 * 131.19558 * 2 1 3 5 5 C 1.53778 * 87.08060 * 139.97936 * 4 2 1 6 6 C 1.53780 * 87.08302 * 334.56695 * 5 4 2 7 7 H 1.08990 * 113.61517 * 139.98087 * 6 5 4 8 8 C 1.50703 * 113.61214 * 270.88730 * 6 5 4 9 9 O 1.21273 * 120.00071 * 65.49380 * 8 6 5 10 10 N 1.34776 * 119.99563 * 245.49285 * 8 6 5 11 11 C 1.46505 * 120.00062 * 179.97438 * 10 8 6 12 12 H 1.09004 * 110.28438 * 32.87867 * 11 10 8 13 13 C 1.54375 * 110.32656 * 270.64492 * 11 10 8 14 14 N 1.48563 * 104.59186 * 217.25098 * 13 11 10 15 15 C 1.46901 * 110.99986 * 159.03848 * 14 13 11 16 16 C 1.50703 * 109.46840 * 60.10420 * 15 14 13 17 17 O 1.21287 * 120.00535 * 9.35400 * 16 15 14 18 18 N 1.34778 * 119.99707 * 189.35430 * 16 15 14 19 19 C 1.37102 * 119.99981 * 180.02562 * 18 16 15 20 20 H 1.07993 * 120.00131 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99841 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00093 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99676 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47350 * 60.00104 * 23 21 19 25 25 H 1.48503 * 109.46905 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47313 * 299.99565 * 23 21 19 27 27 C 1.48554 * 104.22308 * 39.48002 * 14 13 11 28 28 C 1.54253 * 110.32126 * 155.00072 * 11 10 8 29 29 H 1.08994 * 110.33055 * 0.02562 * 28 11 10 30 30 O 1.42906 * 110.32690 * 237.79372 * 28 11 10 31 31 H 1.09000 * 109.47271 * 324.09800 * 1 2 3 32 32 H 1.09005 * 109.47398 * 204.10174 * 1 2 3 33 33 H 1.08998 * 109.47357 * 84.09772 * 1 2 3 34 34 H 1.08998 * 109.47293 * 50.33169 * 3 2 1 35 35 H 1.09000 * 109.47168 * 170.33384 * 3 2 1 36 36 H 1.09004 * 109.46823 * 290.33306 * 3 2 1 37 37 H 1.09005 * 113.61065 * 254.52942 * 4 2 1 38 38 H 1.08997 * 113.61471 * 25.42841 * 4 2 1 39 39 H 1.08999 * 113.61197 * 89.11552 * 5 4 2 40 40 H 1.09000 * 113.61625 * 219.92957 * 5 4 2 41 41 H 0.97003 * 120.00343 * 0.02562 * 10 8 6 42 42 H 1.09002 * 110.41110 * 336.02242 * 13 11 10 43 43 H 1.08996 * 110.41392 * 98.46764 * 13 11 10 44 44 H 1.08997 * 109.47140 * 180.09851 * 15 14 13 45 45 H 1.09000 * 109.47294 * 300.10787 * 15 14 13 46 46 H 0.97001 * 120.00346 * 0.02562 * 18 16 15 47 47 H 0.97005 * 120.00216 * 180.02562 * 22 21 19 48 48 H 1.09003 * 110.41114 * 201.74016 * 27 14 13 49 49 H 1.09003 * 110.41615 * 79.29805 * 27 14 13 50 50 H 0.96692 * 114.00479 * 180.02562 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 3.1923 -1.3136 0.0013 6 6 2.1460 -0.9301 -1.0584 7 1 2.5650 -0.4008 -1.9141 8 6 1.2452 -2.0705 -1.4576 9 8 0.4796 -2.5503 -0.6487 10 7 1.2904 -2.5569 -2.7137 11 6 0.4151 -3.6658 -3.1018 12 1 -0.5309 -3.6067 -2.5636 13 6 1.1078 -5.0176 -2.8259 14 7 0.6972 -5.8867 -3.9587 15 6 1.6291 -7.0100 -4.1251 16 6 1.6480 -7.8377 -2.8659 17 8 0.8359 -7.6278 -1.9898 18 7 2.5674 -8.8113 -2.7133 19 6 2.5843 -9.5648 -1.5680 20 1 1.8612 -9.3778 -0.7879 21 6 3.5325 -10.5682 -1.4104 22 7 4.4127 -10.7953 -2.3594 23 14 3.5560 -11.5942 0.1503 24 1 2.2582 -12.3007 0.2979 25 1 4.6549 -12.5900 0.0716 26 1 3.7733 -10.7082 1.3221 27 6 0.7316 -4.9868 -5.1402 28 6 0.1676 -3.6455 -4.6242 29 1 0.6976 -2.8108 -5.0829 30 8 -1.2321 -3.5573 -4.8984 31 1 -0.3634 0.8324 0.6026 32 1 -0.3634 -0.9381 0.4197 33 1 -0.3634 0.1057 -1.0222 34 1 1.6607 1.9995 0.7910 35 1 3.1988 1.3514 0.1726 36 1 1.9361 1.8834 -0.9637 37 1 2.5650 -0.3969 1.9150 38 1 1.4945 -1.7522 1.3507 39 1 4.0710 -0.6687 0.0007 40 1 3.4454 -2.3738 0.0033 41 1 1.9030 -2.1734 -3.3607 42 1 2.1908 -4.8945 -2.8144 43 1 0.7619 -5.4361 -1.8808 44 1 1.3061 -7.6291 -4.9620 45 1 2.6299 -6.6257 -4.3223 46 1 3.2171 -8.9790 -3.4137 47 1 5.0744 -11.4961 -2.2496 48 1 0.1023 -5.3822 -5.9376 49 1 1.7557 -4.8588 -5.4909 50 1 -1.4480 -3.5412 -5.8408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195517983.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -119.537959 kcal Electronic energy + Delta-G solvation = -30580.197590 eV Core-core repulsion = 26413.937344 eV Total energy + Delta-G solvation = -4166.260246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.04765 -40.91708 -39.75765 -38.55789 -36.80902 -35.96092 -35.47720 -33.33704 -31.92321 -31.35173 -29.42622 -28.39784 -28.16965 -27.19099 -25.92173 -23.63012 -22.89237 -22.19762 -21.79225 -21.02777 -19.91675 -19.60439 -18.46009 -17.90974 -17.57218 -17.30073 -16.68985 -16.53398 -16.21276 -16.14296 -15.93592 -15.66562 -15.52245 -15.36978 -14.91577 -14.75913 -14.27938 -14.20725 -14.09797 -13.92149 -13.60869 -13.45657 -13.22623 -13.09640 -13.01804 -12.97304 -12.87435 -12.52487 -12.47613 -12.31476 -12.15489 -12.10911 -12.00853 -11.86424 -11.51724 -11.10842 -11.06136 -11.02060 -10.61586 -10.34662 -10.21365 -10.04366 -9.44267 -8.50424 -5.99009 1.35960 1.37867 1.48804 1.52632 1.93069 2.00990 2.25840 2.81664 3.13909 3.17331 3.30455 3.39871 3.53798 3.60353 3.65025 3.79083 3.85133 3.93909 4.14173 4.15193 4.23902 4.31768 4.38192 4.46065 4.49861 4.55429 4.62292 4.65339 4.70069 4.76332 4.83531 4.86965 4.88221 4.97291 5.01235 5.02156 5.17207 5.22225 5.29864 5.31816 5.36895 5.43347 5.64913 5.72723 5.85179 6.03574 6.50826 6.57142 6.94410 7.09497 7.25976 7.51729 8.09199 8.66793 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010691 B = 0.002929 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.292875 B = 9558.346155 C =11467.356393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C -0.121 4.121 4 C -0.141 4.141 5 C -0.116 4.116 6 C -0.127 4.127 7 H 0.129 0.871 8 C 0.523 3.477 9 O -0.570 6.570 10 N -0.707 5.707 11 C 0.151 3.849 12 H 0.069 0.931 13 C 0.041 3.959 14 N -0.506 5.506 15 C 0.049 3.951 16 C 0.434 3.566 17 O -0.620 6.620 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.274 1.274 27 C 0.000 4.000 28 C 0.112 3.888 29 H 0.113 0.887 30 O -0.574 6.574 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.124 0.876 40 H 0.048 0.952 41 H 0.418 0.582 42 H 0.044 0.956 43 H 0.048 0.952 44 H 0.118 0.882 45 H 0.075 0.925 46 H 0.397 0.603 47 H 0.279 0.721 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 25.765 -8.327 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.178 4.178 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.148 4.148 7 H 0.147 0.853 8 C 0.311 3.689 9 O -0.448 6.448 10 N -0.361 5.361 11 C 0.045 3.955 12 H 0.088 0.912 13 C -0.089 4.089 14 N -0.231 5.231 15 C -0.083 4.083 16 C 0.222 3.778 17 O -0.506 6.506 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.198 1.198 25 H -0.190 1.190 26 H -0.199 1.199 27 C -0.127 4.127 28 C 0.052 3.948 29 H 0.130 0.870 30 O -0.383 6.383 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.067 0.933 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.136 0.864 45 H 0.093 0.907 46 H 0.231 0.769 47 H 0.088 0.912 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.241 25.171 -6.489 25.995 hybrid contribution 1.153 -1.040 -0.280 1.578 sum 0.912 24.131 -6.769 25.079 Atomic orbital electron populations 1.21832 0.95035 1.01641 1.01153 1.21691 0.94828 0.95304 0.94172 1.21609 1.01264 0.91894 1.03039 1.23129 0.98065 0.99070 0.97599 1.22794 0.96933 1.01482 0.94196 1.22592 0.97089 0.94779 1.00339 0.85279 1.20806 0.82872 0.83779 0.81460 1.90701 1.41173 1.61377 1.51555 1.45849 1.41945 1.35210 1.13080 1.21274 0.93483 0.84829 0.95936 0.91242 1.23263 0.97346 0.92279 0.95985 1.65103 1.47109 1.07078 1.03805 1.21994 0.96475 0.93951 0.95858 1.20862 0.83034 0.83668 0.90263 1.90519 1.42434 1.71658 1.45970 1.41901 1.29783 1.30676 1.18524 1.19574 1.15890 1.13987 0.97046 0.90873 1.25988 0.94819 0.98241 1.01894 1.69650 1.18329 1.33418 1.34453 0.85042 0.78249 0.77813 0.77554 1.19842 1.18964 1.19950 1.24113 1.02485 0.92515 0.93625 1.22620 0.83234 0.96804 0.92144 0.86986 1.86556 1.22633 1.96809 1.32285 0.91696 0.93702 0.93571 0.91545 0.90786 0.90965 0.89966 0.92508 0.85814 0.93328 0.74358 0.93769 0.93317 0.86437 0.90707 0.76875 0.91159 0.87355 0.90111 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.11 71.98 0.58 -2.51 16 2 C -0.06 -1.05 1.33 -51.65 -0.07 -1.12 16 3 C -0.12 -1.28 9.03 71.98 0.65 -0.63 16 4 C -0.14 -3.00 6.78 31.12 0.21 -2.79 16 5 C -0.12 -2.11 7.31 31.12 0.23 -1.88 16 6 C -0.13 -2.25 3.86 -11.01 -0.04 -2.29 16 7 H 0.13 1.30 8.10 -2.39 -0.02 1.28 16 8 C 0.52 13.94 6.48 87.66 0.57 14.51 16 9 O -0.57 -21.30 12.63 -3.01 -0.04 -21.34 16 10 N -0.71 -15.54 5.06 -438.30 -2.22 -17.76 16 11 C 0.15 4.36 3.22 45.88 0.15 4.51 16 12 H 0.07 2.63 7.40 -2.38 -0.02 2.62 16 13 C 0.04 1.49 5.28 86.45 0.46 1.95 16 14 N -0.51 -17.12 5.18 -886.04 -4.59 -21.71 16 15 C 0.05 1.71 5.40 85.56 0.46 2.17 16 16 C 0.43 21.73 7.36 87.66 0.65 22.38 16 17 O -0.62 -36.95 14.10 -3.05 -0.04 -36.99 16 18 N -0.57 -30.25 5.29 -306.98 -1.62 -31.87 16 19 C -0.34 -19.76 9.68 84.04 0.81 -18.94 16 20 H 0.07 4.66 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 22 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 23 Si 0.99 44.25 29.55 68.60 2.03 46.28 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.00 0.00 6.23 86.45 0.54 0.54 16 28 C 0.11 2.16 4.18 31.49 0.13 2.29 16 29 H 0.11 1.18 7.67 -2.39 -0.02 1.16 16 30 O -0.57 -12.08 13.26 -148.98 -1.98 -14.06 16 31 H 0.06 1.20 7.98 -2.39 -0.02 1.18 16 32 H 0.04 1.33 5.94 -2.38 -0.01 1.31 16 33 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 34 H 0.07 0.67 8.07 -2.39 -0.02 0.65 16 35 H 0.07 0.59 7.34 -2.39 -0.02 0.57 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 38 H 0.06 1.66 6.81 -2.39 -0.02 1.65 16 39 H 0.12 1.41 7.64 -2.39 -0.02 1.39 16 40 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 41 H 0.42 5.32 8.35 -92.71 -0.77 4.55 16 42 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 43 H 0.05 2.40 6.58 -2.39 -0.02 2.39 16 44 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 45 H 0.08 2.23 7.97 -2.39 -0.02 2.21 16 46 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 47 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 48 H 0.11 1.83 8.08 -2.39 -0.02 1.82 16 49 H 0.08 1.22 7.91 -2.39 -0.02 1.20 16 50 H 0.40 3.92 9.12 -74.06 -0.68 3.24 16 Total: -1.00 -85.36 395.92 -3.59 -88.96 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -1.20 Total: 40.13 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 5.79 Total: 18.13 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -8.15 Total: -121.10 kcal Atomic # 8 Polarization: -70.33 SS G_CDS: -2.06 Total: -72.39 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -85.36 -3.59 -88.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195517983.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.583 kcal (2) G-P(sol) polarization free energy of solvation -85.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds