Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47040 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47035 * 240.00232 * 3 2 1 6 6 H 1.48493 * 109.47219 * 120.00503 * 3 2 1 7 7 C 1.38811 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 206.50453 * 7 2 1 9 9 N 1.36935 * 120.00114 * 26.49459 * 7 2 1 10 10 C 1.43463 * 118.94418 * 207.14382 * 9 7 2 11 11 C 1.53800 * 107.95594 * 273.61114 * 10 9 7 12 12 C 1.47139 * 111.84388 * 281.66239 * 11 10 9 13 13 N 1.48216 * 110.33900 * 58.29922 * 12 11 10 14 14 C 1.34775 * 119.96652 * 102.51907 * 13 12 11 15 15 O 1.21276 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99691 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47068 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47305 * 179.97438 * 17 16 14 19 19 C 1.34780 * 120.00298 * 180.02562 * 18 17 16 20 20 O 1.21276 * 119.99796 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00068 * 179.97438 * 19 18 17 22 22 H 1.09001 * 110.33348 * 57.24748 * 21 19 18 23 23 C 1.54475 * 110.37486 * 294.99720 * 21 19 18 24 24 C 1.54504 * 104.06459 * 217.19086 * 23 21 19 25 25 C 1.54482 * 104.06381 * 359.97438 * 24 23 21 26 26 O 1.44425 * 104.80126 * 23.97891 * 25 24 23 27 27 C 1.43623 * 120.06030 * 282.49177 * 13 12 11 28 28 C 1.48860 * 118.93651 * 26.87416 * 9 7 2 29 29 H 0.96998 * 119.99990 * 185.78778 * 1 2 3 30 30 H 1.08997 * 109.76599 * 33.22429 * 10 9 7 31 31 H 1.09000 * 109.76263 * 153.94390 * 10 9 7 32 32 H 1.09001 * 109.01024 * 42.27686 * 11 10 9 33 33 H 1.09005 * 109.00211 * 161.13740 * 11 10 9 34 34 H 1.08998 * 109.32663 * 178.56764 * 12 11 10 35 35 H 1.09003 * 109.32650 * 298.21296 * 12 11 10 36 36 H 1.09004 * 109.46781 * 299.99381 * 16 14 13 37 37 H 1.08998 * 109.47344 * 59.99260 * 16 14 13 38 38 H 1.09004 * 109.46974 * 299.99459 * 17 16 14 39 39 H 1.08998 * 109.47482 * 59.99541 * 17 16 14 40 40 H 0.96998 * 119.99898 * 359.97438 * 18 17 16 41 41 H 1.09003 * 110.50791 * 335.83579 * 23 21 19 42 42 H 1.09005 * 110.51162 * 98.40720 * 23 21 19 43 43 H 1.08996 * 110.51312 * 118.64235 * 24 23 21 44 44 H 1.08998 * 110.51265 * 241.35487 * 24 23 21 45 45 H 1.08997 * 110.37274 * 142.81341 * 25 24 23 46 46 H 1.08999 * 110.36878 * 265.03850 * 25 24 23 47 47 H 1.08999 * 108.87197 * 211.44720 * 27 13 12 48 48 H 1.09000 * 108.87340 * 329.98156 * 27 13 12 49 49 H 1.09002 * 109.48060 * 260.62386 * 28 9 7 50 50 H 1.08998 * 109.48404 * 20.65813 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0051 -1.2514 0.4168 9 7 1.4335 -2.3255 -0.5301 10 6 1.8365 -3.6111 -0.0371 11 6 3.0770 -4.0555 -0.8302 12 6 2.7199 -4.5729 -2.1606 13 7 1.9909 -3.5412 -2.9359 14 6 2.6291 -2.8467 -3.8986 15 8 3.7993 -3.0657 -4.1298 16 6 1.8887 -1.7971 -4.6870 17 6 2.8361 -1.1631 -5.7074 18 7 2.1163 -0.1433 -6.4742 19 6 2.7544 0.5512 -7.4371 20 8 3.9246 0.3322 -7.6684 21 6 2.0137 1.5999 -8.2262 22 1 1.5940 2.3511 -7.5573 23 6 0.8968 0.9481 -9.0712 24 6 0.9014 1.7569 -10.3876 25 6 2.0201 2.8022 -10.1821 26 8 2.8929 2.2184 -9.1904 27 6 0.6051 -3.2814 -2.6626 28 6 0.4041 -2.1732 -1.5945 29 1 -0.4850 -0.8357 0.0847 30 1 2.0827 -3.5390 1.0223 31 1 1.0298 -4.3300 -0.1798 32 1 3.7467 -3.2036 -0.9487 33 1 3.5930 -4.8376 -0.2732 34 1 3.6281 -4.8512 -2.6951 35 1 2.0844 -5.4512 -2.0473 36 1 1.0495 -2.2585 -5.2075 37 1 1.5177 -1.0282 -4.0094 38 1 3.6751 -0.7017 -5.1866 39 1 3.2075 -1.9319 -6.3850 40 1 1.1803 0.0316 -6.2895 41 1 1.1271 -0.0995 -9.2657 42 1 -0.0656 1.0394 -8.5677 43 1 1.1339 1.1093 -11.2329 44 1 -0.0591 2.2502 -10.5361 45 1 2.5611 2.9672 -11.1138 46 1 1.6010 3.7396 -9.8164 47 1 0.1151 -2.9741 -3.5865 48 1 0.1382 -4.1991 -2.3047 49 1 -0.5893 -2.2633 -1.1551 50 1 0.5072 -1.1943 -2.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198386313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -89.522052 kcal Electronic energy + Delta-G solvation = -30843.850355 eV Core-core repulsion = 26678.891697 eV Total energy + Delta-G solvation = -4164.958659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.46334 -39.91774 -38.52949 -37.23929 -35.17513 -34.48849 -33.10890 -32.49458 -31.22058 -30.77295 -29.44645 -27.66815 -25.62726 -24.63292 -23.77433 -23.25791 -21.87746 -21.54068 -20.61982 -19.83718 -18.59331 -17.70600 -17.48906 -16.98236 -16.70693 -16.06310 -16.01898 -15.74523 -15.30727 -14.90744 -14.66578 -14.34827 -14.28410 -14.04578 -13.72045 -13.58918 -13.37494 -13.13184 -13.01092 -12.70819 -12.36286 -12.23015 -12.15285 -12.03762 -11.73574 -11.68164 -11.44658 -11.28687 -11.14540 -11.13440 -10.74512 -10.39069 -10.35521 -10.32112 -10.28602 -10.04882 -9.76436 -9.45444 -9.41897 -9.11720 -8.38254 -8.21997 -6.95491 -6.12671 -3.30149 2.51908 2.70127 2.95848 3.42482 3.46562 3.50623 3.67000 3.79128 4.14822 4.36073 4.50562 4.54590 4.67102 4.80766 4.82523 4.88656 5.00165 5.01108 5.13636 5.20994 5.27913 5.31406 5.41901 5.42207 5.47228 5.53207 5.56128 5.62178 5.62459 5.80276 5.87466 5.89534 5.98498 6.05509 6.11488 6.29592 6.30573 6.39679 6.42707 6.59629 6.71349 6.83908 6.88339 7.11709 7.38389 7.79596 8.01024 8.14586 8.50311 8.52527 9.08823 9.77860 10.16737 11.13320 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003106 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.321094 B = 9012.527854 C =10306.190979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.053 2.947 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.351 4.351 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.584 5.584 14 C 0.527 3.473 15 O -0.551 6.551 16 C -0.154 4.154 17 C 0.138 3.862 18 N -0.727 5.727 19 C 0.517 3.483 20 O -0.517 6.517 21 C 0.057 3.943 22 H 0.098 0.902 23 C -0.146 4.146 24 C -0.153 4.153 25 C 0.040 3.960 26 O -0.345 6.345 27 C 0.087 3.913 28 C 0.137 3.863 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.401 0.599 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -1.877 -16.223 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.883 3.117 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.480 4.480 8 H 0.071 0.929 9 N -0.316 5.316 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.314 3.686 15 O -0.429 6.429 16 C -0.194 4.194 17 C 0.015 3.985 18 N -0.381 5.381 19 C 0.302 3.698 20 O -0.391 6.391 21 C -0.005 4.005 22 H 0.115 0.885 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.036 4.036 26 O -0.262 6.262 27 C -0.039 4.039 28 C 0.011 3.989 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.708 -0.513 -16.566 16.983 hybrid contribution -0.613 -1.489 0.439 1.669 sum -4.320 -2.002 -16.127 16.815 Atomic orbital electron populations 1.70831 1.06546 1.30060 1.48060 1.25695 0.96367 1.01206 0.98763 0.83690 0.75037 0.76454 0.76518 1.21093 1.22033 1.21924 1.19922 0.98613 0.89271 1.40220 0.92863 1.43676 1.46802 1.01817 1.39346 1.20290 0.92945 0.87378 0.95798 1.21833 1.01943 1.01093 0.96110 1.20570 0.96900 0.89015 0.92655 1.47335 1.11501 1.37918 1.34816 1.20108 0.86958 0.81384 0.80127 1.90674 1.16240 1.67190 1.68802 1.21849 0.99547 0.99157 0.98843 1.21043 0.94390 0.90193 0.92870 1.45878 1.14956 1.39893 1.37340 1.20132 0.87450 0.82051 0.80202 1.90752 1.15960 1.66004 1.66377 1.22879 0.90218 0.94673 0.92687 0.88457 1.22934 0.98538 1.01083 0.95822 1.22940 0.99889 0.98212 0.98073 1.23505 0.91437 0.95824 0.92882 1.89291 1.28325 1.72509 1.36110 1.22038 0.81506 1.00624 0.99735 1.22178 0.92082 0.96626 0.88012 0.92150 0.93469 0.95082 0.91166 0.92572 0.90288 0.92126 0.88692 0.87426 0.90282 0.90674 0.76527 0.90057 0.89311 0.90329 0.90032 0.88628 0.91829 0.91306 0.91704 0.94672 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.52 12.63 55.49 0.70 -24.82 16 2 C -0.02 -0.49 4.60 -17.43 -0.08 -0.57 16 3 Si 1.05 24.78 29.99 -169.99 -5.10 19.69 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.35 -9.32 9.12 -15.06 -0.14 -9.46 16 8 H 0.05 1.49 7.96 -52.49 -0.42 1.07 16 9 N -0.59 -13.54 2.38 -171.78 -0.41 -13.95 16 10 C 0.16 3.21 5.63 -5.23 -0.03 3.18 16 11 C -0.17 -3.00 5.64 -29.13 -0.16 -3.16 16 12 C 0.13 2.09 5.70 -5.91 -0.03 2.05 16 13 N -0.58 -9.73 2.46 -176.43 -0.43 -10.17 16 14 C 0.53 9.25 7.67 -10.98 -0.08 9.17 16 15 O -0.55 -11.46 15.42 5.56 0.09 -11.37 16 16 C -0.15 -2.11 4.37 -27.88 -0.12 -2.23 16 17 C 0.14 2.03 4.96 -4.05 -0.02 2.01 16 18 N -0.73 -8.66 5.54 -60.30 -0.33 -9.00 16 19 C 0.52 7.31 7.08 -10.99 -0.08 7.23 16 20 O -0.52 -9.93 16.55 -13.65 -0.23 -10.16 16 21 C 0.06 0.61 3.71 -27.11 -0.10 0.50 16 22 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.15 -1.07 6.61 -25.17 -0.17 -1.23 16 24 C -0.15 -0.97 7.09 -25.16 -0.18 -1.15 16 25 C 0.04 0.32 7.63 37.94 0.29 0.61 16 26 O -0.34 -4.45 10.91 -54.44 -0.59 -5.04 16 27 C 0.09 1.32 5.06 -4.39 -0.02 1.30 16 28 C 0.14 2.75 5.09 -1.56 -0.01 2.74 16 29 H 0.27 7.43 6.37 -40.82 -0.26 7.17 16 30 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 31 H 0.03 0.55 7.59 -51.93 -0.39 0.15 16 32 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.31 7.12 -51.93 -0.37 0.94 16 35 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.09 0.98 7.37 -51.93 -0.38 0.59 16 37 H 0.11 1.57 7.35 -51.93 -0.38 1.19 16 38 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 39 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.40 3.39 8.47 -40.82 -0.35 3.04 16 41 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.84 6.38 -51.93 -0.33 0.51 16 48 H 0.06 0.89 7.72 -51.93 -0.40 0.49 16 49 H 0.04 0.73 7.11 -51.93 -0.37 0.36 16 50 H 0.07 1.53 6.23 -51.93 -0.32 1.20 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -35.63 391.85 -9.56 -45.19 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.23 Total: 2.74 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -0.93 Total: 10.99 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.48 Total: -57.93 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.73 Total: -26.57 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.10 Total: 19.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.63 -9.56 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198386313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.332 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds