Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47040 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47035 * 240.00232 * 3 2 1 6 6 H 1.48493 * 109.47219 * 120.00503 * 3 2 1 7 7 C 1.38811 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 206.50453 * 7 2 1 9 9 N 1.36935 * 120.00114 * 26.49459 * 7 2 1 10 10 C 1.43463 * 118.94418 * 207.14382 * 9 7 2 11 11 C 1.53800 * 107.95594 * 273.61114 * 10 9 7 12 12 C 1.47139 * 111.84388 * 281.66239 * 11 10 9 13 13 N 1.48216 * 110.33900 * 58.29922 * 12 11 10 14 14 C 1.34775 * 119.96652 * 102.51907 * 13 12 11 15 15 O 1.21276 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99691 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.47068 * 179.97438 * 16 14 13 18 18 N 1.46496 * 109.47305 * 179.97438 * 17 16 14 19 19 C 1.34780 * 120.00298 * 180.02562 * 18 17 16 20 20 O 1.21276 * 119.99796 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00068 * 179.97438 * 19 18 17 22 22 H 1.09001 * 110.33348 * 57.24748 * 21 19 18 23 23 C 1.54475 * 110.37486 * 294.99720 * 21 19 18 24 24 C 1.54504 * 104.06459 * 217.19086 * 23 21 19 25 25 C 1.54482 * 104.06381 * 359.97438 * 24 23 21 26 26 O 1.44425 * 104.80126 * 23.97891 * 25 24 23 27 27 C 1.43623 * 120.06030 * 282.49177 * 13 12 11 28 28 C 1.48860 * 118.93651 * 26.87416 * 9 7 2 29 29 H 0.96998 * 119.99990 * 185.78778 * 1 2 3 30 30 H 1.08997 * 109.76599 * 33.22429 * 10 9 7 31 31 H 1.09000 * 109.76263 * 153.94390 * 10 9 7 32 32 H 1.09001 * 109.01024 * 42.27686 * 11 10 9 33 33 H 1.09005 * 109.00211 * 161.13740 * 11 10 9 34 34 H 1.08998 * 109.32663 * 178.56764 * 12 11 10 35 35 H 1.09003 * 109.32650 * 298.21296 * 12 11 10 36 36 H 1.09004 * 109.46781 * 299.99381 * 16 14 13 37 37 H 1.08998 * 109.47344 * 59.99260 * 16 14 13 38 38 H 1.09004 * 109.46974 * 299.99459 * 17 16 14 39 39 H 1.08998 * 109.47482 * 59.99541 * 17 16 14 40 40 H 0.96998 * 119.99898 * 359.97438 * 18 17 16 41 41 H 1.09003 * 110.50791 * 335.83579 * 23 21 19 42 42 H 1.09005 * 110.51162 * 98.40720 * 23 21 19 43 43 H 1.08996 * 110.51312 * 118.64235 * 24 23 21 44 44 H 1.08998 * 110.51265 * 241.35487 * 24 23 21 45 45 H 1.08997 * 110.37274 * 142.81341 * 25 24 23 46 46 H 1.08999 * 110.36878 * 265.03850 * 25 24 23 47 47 H 1.08999 * 108.87197 * 211.44720 * 27 13 12 48 48 H 1.09000 * 108.87340 * 329.98156 * 27 13 12 49 49 H 1.09002 * 109.48060 * 260.62386 * 28 9 7 50 50 H 1.08998 * 109.48404 * 20.65813 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0051 -1.2514 0.4168 9 7 1.4335 -2.3255 -0.5301 10 6 1.8365 -3.6111 -0.0371 11 6 3.0770 -4.0555 -0.8302 12 6 2.7199 -4.5729 -2.1606 13 7 1.9909 -3.5412 -2.9359 14 6 2.6291 -2.8467 -3.8986 15 8 3.7993 -3.0657 -4.1298 16 6 1.8887 -1.7971 -4.6870 17 6 2.8361 -1.1631 -5.7074 18 7 2.1163 -0.1433 -6.4742 19 6 2.7544 0.5512 -7.4371 20 8 3.9246 0.3322 -7.6684 21 6 2.0137 1.5999 -8.2262 22 1 1.5940 2.3511 -7.5573 23 6 0.8968 0.9481 -9.0712 24 6 0.9014 1.7569 -10.3876 25 6 2.0201 2.8022 -10.1821 26 8 2.8929 2.2184 -9.1904 27 6 0.6051 -3.2814 -2.6626 28 6 0.4041 -2.1732 -1.5945 29 1 -0.4850 -0.8357 0.0847 30 1 2.0827 -3.5390 1.0223 31 1 1.0298 -4.3300 -0.1798 32 1 3.7467 -3.2036 -0.9487 33 1 3.5930 -4.8376 -0.2732 34 1 3.6281 -4.8512 -2.6951 35 1 2.0844 -5.4512 -2.0473 36 1 1.0495 -2.2585 -5.2075 37 1 1.5177 -1.0282 -4.0094 38 1 3.6751 -0.7017 -5.1866 39 1 3.2075 -1.9319 -6.3850 40 1 1.1803 0.0316 -6.2895 41 1 1.1271 -0.0995 -9.2657 42 1 -0.0656 1.0394 -8.5677 43 1 1.1339 1.1093 -11.2329 44 1 -0.0591 2.2502 -10.5361 45 1 2.5611 2.9672 -11.1138 46 1 1.6010 3.7396 -9.8164 47 1 0.1151 -2.9741 -3.5865 48 1 0.1382 -4.1991 -2.3047 49 1 -0.5893 -2.2633 -1.1551 50 1 0.5072 -1.1943 -2.0626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198386313.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -114.627748 kcal Electronic energy + Delta-G solvation = -30844.939020 eV Core-core repulsion = 26678.891697 eV Total energy + Delta-G solvation = -4166.047323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.52306 -41.16707 -39.49331 -38.78551 -36.43585 -36.11113 -34.57132 -33.25978 -32.73024 -32.08082 -30.31220 -29.21165 -27.13084 -25.73301 -25.51246 -24.29100 -22.87095 -22.48364 -21.65138 -21.50963 -19.89764 -19.32863 -18.63200 -18.28618 -17.60029 -17.39916 -17.07325 -16.95020 -16.33708 -16.11260 -15.95964 -15.76530 -15.69880 -15.40888 -15.00374 -14.74065 -14.51832 -14.49572 -14.30947 -14.20370 -13.86145 -13.65445 -13.01000 -12.94050 -12.83297 -12.72921 -12.69895 -12.58964 -12.55308 -12.25823 -12.04352 -11.99827 -11.85376 -11.80412 -11.69367 -11.29517 -11.12839 -10.89770 -10.69620 -10.38430 -10.28145 -9.62035 -8.85816 -8.18215 -5.34917 1.43905 1.54744 1.55159 1.58224 1.71849 1.78245 2.22917 2.62107 3.04896 3.18755 3.39904 3.55861 3.62434 3.69234 3.73391 3.92206 3.96915 4.05834 4.08152 4.13367 4.21109 4.22308 4.37205 4.38441 4.41436 4.51602 4.64302 4.68470 4.72768 4.76100 4.80802 4.84270 4.86068 4.93397 4.97772 5.02241 5.04055 5.14303 5.17493 5.22420 5.24810 5.41468 5.70597 5.73300 5.89465 6.40485 6.45069 6.51162 7.11161 7.16120 7.18531 7.85205 8.20984 9.03105 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003106 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.321094 B = 9012.527854 C =10306.190979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.056 4.056 3 Si 1.092 2.908 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.354 4.354 8 H 0.027 0.973 9 N -0.609 5.609 10 C 0.161 3.839 11 C -0.154 4.154 12 C 0.127 3.873 13 N -0.585 5.585 14 C 0.515 3.485 15 O -0.592 6.592 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.707 5.707 19 C 0.511 3.489 20 O -0.579 6.579 21 C 0.056 3.944 22 H 0.122 0.878 23 C -0.140 4.140 24 C -0.148 4.148 25 C 0.031 3.969 26 O -0.390 6.390 27 C 0.095 3.905 28 C 0.140 3.860 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.422 0.578 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.029 0.971 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 -2.589 -17.531 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.254 4.254 3 Si 0.919 3.081 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.484 4.484 8 H 0.045 0.955 9 N -0.333 5.333 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.005 3.995 13 N -0.315 5.315 14 C 0.304 3.696 15 O -0.474 6.474 16 C -0.179 4.179 17 C 0.023 3.977 18 N -0.362 5.362 19 C 0.297 3.703 20 O -0.458 6.458 21 C -0.004 4.004 22 H 0.139 0.861 23 C -0.178 4.178 24 C -0.185 4.185 25 C -0.045 4.045 26 O -0.309 6.309 27 C -0.030 4.030 28 C 0.014 3.986 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.161 0.839 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.260 0.740 41 H 0.090 0.910 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.099 0.901 47 H 0.127 0.873 48 H 0.111 0.889 49 H 0.046 0.954 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.724 -1.247 -17.858 19.123 hybrid contribution 0.354 -1.308 0.907 1.630 sum -6.370 -2.555 -16.952 18.289 Atomic orbital electron populations 1.70908 1.06830 1.29610 1.49948 1.26525 0.96582 1.03299 0.99028 0.83131 0.74244 0.74150 0.76585 1.20824 1.22081 1.21287 1.19960 0.97559 0.91073 1.39854 0.95465 1.43894 1.47113 1.01801 1.40472 1.20407 0.94439 0.86829 0.94949 1.21648 1.00230 0.99992 0.97584 1.20660 0.97671 0.90064 0.91059 1.47489 1.12160 1.37628 1.34268 1.20793 0.86706 0.81678 0.80444 1.90658 1.18172 1.68456 1.70094 1.21780 0.99964 0.98007 0.98166 1.20730 0.93991 0.90195 0.92797 1.45670 1.15696 1.38674 1.36151 1.20982 0.86932 0.82270 0.80082 1.90719 1.18784 1.68013 1.68264 1.23058 0.90210 0.94181 0.92982 0.86106 1.22993 0.98542 1.00281 0.95956 1.22955 1.00475 0.97650 0.97429 1.23776 0.91645 0.96861 0.92203 1.89253 1.30876 1.73220 1.37584 1.22025 0.81001 1.00055 0.99940 1.22149 0.90715 0.97376 0.88314 0.92932 0.95364 0.91980 0.96011 0.89972 0.91150 0.88110 0.83926 0.87893 0.94375 0.91774 0.74036 0.91006 0.85909 0.90423 0.87239 0.88191 0.90148 0.87340 0.88880 0.95367 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.02 12.63 21.65 0.27 -51.75 16 2 C -0.06 -3.02 4.60 84.86 0.39 -2.63 16 3 Si 1.09 50.85 29.99 68.60 2.06 52.91 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.35 -19.19 9.12 84.03 0.77 -18.42 16 8 H 0.03 1.59 7.96 -2.91 -0.02 1.57 16 9 N -0.61 -27.62 2.38 -697.38 -1.66 -29.29 16 10 C 0.16 6.12 5.63 87.21 0.49 6.61 16 11 C -0.15 -5.33 5.64 29.04 0.16 -5.17 16 12 C 0.13 3.78 5.70 84.23 0.48 4.26 16 13 N -0.59 -18.15 2.46 -830.48 -2.04 -20.19 16 14 C 0.51 17.62 7.67 87.66 0.67 18.29 16 15 O -0.59 -25.16 15.42 -3.02 -0.05 -25.21 16 16 C -0.14 -3.58 4.37 29.85 0.13 -3.45 16 17 C 0.15 4.37 4.96 86.38 0.43 4.80 16 18 N -0.71 -16.23 5.54 -463.08 -2.57 -18.80 16 19 C 0.51 14.51 7.08 87.66 0.62 15.13 16 20 O -0.58 -23.44 16.55 15.35 0.25 -23.19 16 21 C 0.06 1.13 3.71 30.35 0.11 1.24 16 22 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.14 -1.64 6.61 31.61 0.21 -1.43 16 24 C -0.15 -1.44 7.09 31.61 0.22 -1.22 16 25 C 0.03 0.45 7.63 72.49 0.55 1.00 16 26 O -0.39 -10.02 10.91 -130.62 -1.43 -11.44 16 27 C 0.09 2.52 5.06 87.67 0.44 2.96 16 28 C 0.14 5.38 5.09 86.68 0.44 5.82 16 29 H 0.26 14.49 6.37 -92.71 -0.59 13.90 16 30 H 0.03 1.16 8.02 -2.39 -0.02 1.14 16 31 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 32 H 0.02 0.95 7.91 -2.39 -0.02 0.93 16 33 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.07 2.26 7.12 -2.39 -0.02 2.24 16 35 H 0.10 2.26 8.05 -2.39 -0.02 2.24 16 36 H 0.14 2.29 7.37 -2.38 -0.02 2.27 16 37 H 0.10 2.84 7.35 -2.39 -0.02 2.82 16 38 H 0.04 1.44 8.10 -2.38 -0.02 1.42 16 39 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 40 H 0.42 6.01 8.47 -92.71 -0.79 5.22 16 41 H 0.07 1.00 7.86 -2.39 -0.02 0.98 16 42 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 2.08 6.38 -2.39 -0.02 2.07 16 48 H 0.09 2.05 7.72 -2.39 -0.02 2.03 16 49 H 0.03 1.13 7.11 -2.39 -0.02 1.12 16 50 H 0.04 1.82 6.23 -2.39 -0.01 1.81 16 Total: -1.00 -84.04 391.85 1.31 -82.73 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.33 Total: 16.43 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 6.13 Total: 27.79 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -6.00 Total: -120.03 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.22 Total: -59.84 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.06 Total: 52.91 kcal Total: -84.04 1.31 -82.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198386313.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.896 kcal (2) G-P(sol) polarization free energy of solvation -84.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds