Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48501 * 109.47020 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47147 * 29.99759 * 3 2 1 6 6 H 1.48497 * 109.47706 * 149.99721 * 3 2 1 7 7 C 1.38815 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00297 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.46504 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47058 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47139 * 59.99340 * 11 10 9 13 13 C 1.55322 * 109.40420 * 180.02562 * 11 10 9 14 14 N 1.45124 * 109.25644 * 187.88260 * 13 11 10 15 15 C 1.34778 * 118.75766 * 90.85201 * 14 13 11 16 16 O 1.21283 * 119.99910 * 359.73438 * 15 14 13 17 17 C 1.50695 * 120.00071 * 179.72951 * 15 14 13 18 18 C 1.53006 * 109.47196 * 180.02562 * 17 15 14 19 19 H 1.09006 * 109.59799 * 55.00089 * 18 17 15 20 20 C 1.53343 * 109.60528 * 175.32491 * 18 17 15 21 21 C 1.53004 * 108.46148 * 187.11630 * 20 18 17 22 22 C 1.50176 * 110.00929 * 311.36525 * 21 20 18 23 23 O 1.21276 * 118.24804 * 197.45477 * 22 21 20 24 24 N 1.33359 * 123.50358 * 17.46904 * 22 21 20 25 25 C 1.45750 * 124.10728 * 357.75888 * 24 22 21 26 26 C 1.47511 * 122.48704 * 270.57826 * 14 13 11 27 27 C 1.53571 * 111.02776 * 41.87898 * 26 14 13 28 28 C 1.51537 * 109.58432 * 39.98301 * 27 26 14 29 29 O 1.38015 * 109.46839 * 300.00171 * 11 10 9 30 30 H 0.96999 * 119.99993 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00000 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46816 * 60.00344 * 10 9 7 33 33 H 1.08996 * 109.47235 * 300.00187 * 10 9 7 34 34 H 1.09001 * 109.50504 * 68.00904 * 13 11 10 35 35 H 1.08991 * 109.69531 * 307.87493 * 13 11 10 36 36 H 1.09007 * 109.46985 * 60.00668 * 17 15 14 37 37 H 1.08995 * 109.47338 * 299.99942 * 17 15 14 38 38 H 1.08998 * 109.67219 * 307.02345 * 20 18 17 39 39 H 1.08998 * 109.67013 * 67.55732 * 20 18 17 40 40 H 1.09003 * 109.43107 * 191.15060 * 21 20 18 41 41 H 1.08999 * 109.18314 * 71.43019 * 21 20 18 42 42 H 0.97001 * 117.94579 * 177.77433 * 24 22 21 43 43 H 1.08999 * 109.29846 * 258.77715 * 25 24 22 44 44 H 1.09005 * 109.13177 * 139.29907 * 25 24 22 45 45 H 1.08992 * 109.16953 * 162.28120 * 26 14 13 46 46 H 1.09006 * 109.16445 * 281.48499 * 26 14 13 47 47 H 1.09001 * 109.45123 * 160.00976 * 27 26 14 48 48 H 1.09000 * 109.45591 * 279.96663 * 27 26 14 49 49 H 1.09008 * 109.58933 * 28.37877 * 28 27 26 50 50 H 1.08995 * 109.59479 * 148.81547 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0011 11 6 5.6164 -2.1915 0.0009 12 1 5.8797 -1.6190 0.8903 13 6 6.3914 -3.5375 0.0014 14 7 7.8063 -3.2751 0.1891 15 6 8.3015 -3.2553 1.4425 16 8 7.5670 -3.4499 2.3878 17 6 9.7677 -2.9916 1.6693 18 6 10.0657 -3.0244 3.1697 19 1 9.7256 -3.9712 3.5894 20 6 11.5744 -2.8728 3.3980 21 6 11.8633 -3.0869 4.8852 22 6 10.9212 -2.2633 5.7155 23 8 11.2069 -2.0603 6.8765 24 7 9.7871 -1.7434 5.2444 25 6 9.3436 -1.8676 3.8616 26 6 8.7242 -3.0349 -0.9404 27 6 8.0753 -2.1251 -1.9939 28 6 7.2898 -1.0285 -1.3035 29 8 5.9497 -1.4687 -1.1266 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 3.8484 -3.0435 -0.8882 33 1 3.8491 -3.0416 0.8918 34 1 6.2394 -4.0453 -0.9510 35 1 6.0287 -4.1698 0.8118 36 1 10.0269 -2.0116 1.2684 37 1 10.3569 -3.7578 1.1654 38 1 12.1114 -3.6147 2.8071 39 1 11.8909 -1.8714 3.1062 40 1 12.8898 -2.7909 5.1015 41 1 11.7318 -4.1415 5.1274 42 1 9.2220 -1.2516 5.8606 43 1 9.5570 -0.9402 3.3301 44 1 8.2694 -2.0526 3.8461 45 1 9.6325 -2.5608 -0.5688 46 1 8.9819 -3.9886 -1.4011 47 1 8.8514 -1.6791 -2.6158 48 1 7.4037 -2.7143 -2.6183 49 1 7.7359 -0.8155 -0.3320 50 1 7.3009 -0.1285 -1.9182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200673295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -101.231608 kcal Electronic energy + Delta-G solvation = -30871.976992 eV Core-core repulsion = 26706.510569 eV Total energy + Delta-G solvation = -4165.466423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.10242 -40.33741 -38.82980 -36.98719 -35.86461 -34.80081 -33.78736 -32.99092 -31.86603 -31.18660 -29.41890 -27.58905 -26.59539 -25.26595 -24.66711 -22.79382 -21.98816 -21.82717 -21.09067 -19.55056 -19.16987 -17.79162 -17.58991 -17.44345 -16.71489 -16.55284 -16.42446 -16.07838 -15.79552 -15.16684 -15.02657 -14.61466 -14.39193 -14.19733 -14.02418 -13.85794 -13.66738 -13.51952 -13.33682 -12.91289 -12.81825 -12.62437 -12.41685 -12.17714 -11.99902 -11.97611 -11.71067 -11.50011 -11.44839 -11.31978 -11.24483 -10.96837 -10.83621 -10.42329 -10.13532 -10.05868 -9.91523 -9.60422 -9.55288 -9.30988 -8.86715 -8.74039 -7.17912 -5.72470 -3.06990 2.31313 2.37890 2.64837 3.02259 3.41708 3.45659 3.48537 3.75676 3.95467 4.06303 4.15731 4.31272 4.40532 4.45327 4.51609 4.64296 4.73426 4.80809 4.85779 4.94880 4.99447 5.05329 5.09211 5.15619 5.19243 5.26626 5.28985 5.32739 5.34515 5.37201 5.42889 5.57349 5.62234 5.67475 5.75791 5.78792 5.81556 5.90627 5.96384 6.31372 6.48994 6.53394 6.64649 7.01995 7.07118 7.79024 7.89021 7.94161 8.03576 8.46581 9.26303 9.98717 10.19424 11.46048 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.002881 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.880051 B = 9715.367179 C =11024.000019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.170 3.830 11 C 0.086 3.914 12 H 0.051 0.949 13 C 0.081 3.919 14 N -0.610 5.610 15 C 0.503 3.497 16 O -0.529 6.529 17 C -0.134 4.134 18 C -0.089 4.089 19 H 0.091 0.909 20 C -0.120 4.120 21 C -0.134 4.134 22 C 0.517 3.483 23 O -0.564 6.564 24 N -0.716 5.716 25 C 0.106 3.894 26 C 0.104 3.896 27 C -0.168 4.168 28 C 0.072 3.928 29 O -0.371 6.371 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.401 0.599 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.345 -7.688 -1.326 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.192 4.192 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.042 3.958 11 C 0.026 3.974 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.343 5.343 15 C 0.291 3.709 16 O -0.405 6.405 17 C -0.174 4.174 18 C -0.108 4.108 19 H 0.110 0.890 20 C -0.157 4.157 21 C -0.174 4.174 22 C 0.304 3.696 23 O -0.444 6.444 24 N -0.367 5.367 25 C -0.018 4.018 26 C -0.018 4.018 27 C -0.206 4.206 28 C -0.004 4.004 29 O -0.289 6.289 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.236 0.764 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.064 0.936 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 28.869 -7.873 -0.536 29.928 hybrid contribution 0.546 1.324 0.097 1.435 sum 29.416 -6.549 -0.439 30.139 Atomic orbital electron populations 1.69705 1.05082 1.25770 1.57818 1.24650 0.95224 0.97206 1.02127 0.86496 0.79076 0.84907 0.77747 1.21056 1.21861 1.20509 1.19060 0.80551 0.94765 1.42732 0.89200 1.42543 1.03894 1.02073 1.91001 1.20598 0.85640 0.90156 0.99360 1.22420 0.96358 0.90613 0.88046 0.93139 1.22511 0.79201 0.98944 1.03608 1.47981 1.09358 1.70769 1.06179 1.20757 0.90486 0.76872 0.82748 1.90723 1.60586 1.48466 1.40743 1.21754 0.93807 1.04489 0.97351 1.21232 0.95144 1.00443 0.94017 0.89041 1.21741 0.95293 1.03229 0.95481 1.21607 0.99788 1.01344 0.94655 1.20192 0.81834 0.79616 0.87972 1.90763 1.74524 1.60524 1.18573 1.45480 1.22831 1.55919 1.12421 1.21670 1.01342 0.97684 0.81068 1.22020 0.92260 0.99950 0.87566 1.22507 1.01048 0.98578 0.98459 1.22137 0.82967 0.96027 0.99317 1.86432 1.27107 1.71991 1.43389 0.93113 0.80295 0.94721 0.93951 0.89717 0.88600 0.88442 0.88086 0.90137 0.90908 0.88031 0.88135 0.76361 0.92038 0.88226 0.89857 0.91280 0.89591 0.89759 0.93552 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.92 13.97 55.49 0.78 -29.14 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 22.79 27.73 -169.99 -4.71 18.08 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 7 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -18.51 5.29 -59.91 -0.32 -18.83 16 10 C 0.17 3.35 5.95 -4.04 -0.02 3.33 16 11 C 0.09 1.34 2.74 -25.50 -0.07 1.27 16 12 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 13 C 0.08 0.98 4.91 -3.55 -0.02 0.96 16 14 N -0.61 -5.66 2.18 -172.14 -0.38 -6.03 16 15 C 0.50 4.84 7.38 -10.99 -0.08 4.76 16 16 O -0.53 -7.15 13.46 5.56 0.07 -7.07 16 17 C -0.13 -0.70 3.51 -27.88 -0.10 -0.80 16 18 C -0.09 -0.57 1.89 -90.48 -0.17 -0.74 16 19 H 0.09 0.72 7.94 -51.93 -0.41 0.31 16 20 C -0.12 -0.54 5.33 -26.55 -0.14 -0.68 16 21 C -0.13 -0.88 6.03 -28.13 -0.17 -1.05 16 22 C 0.52 5.47 7.72 -11.87 -0.09 5.38 16 23 O -0.56 -8.43 17.78 5.56 0.10 -8.33 16 24 N -0.72 -6.73 5.45 -61.39 -0.33 -7.06 16 25 C 0.11 0.87 6.11 -4.49 -0.03 0.84 16 26 C 0.10 0.61 5.99 -3.19 -0.02 0.59 16 27 C -0.17 -1.20 5.79 -27.18 -0.16 -1.35 16 28 C 0.07 0.77 6.38 36.42 0.23 1.00 16 29 O -0.37 -5.74 9.18 -26.54 -0.24 -5.98 16 30 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 31 H 0.36 8.95 5.39 -40.82 -0.22 8.73 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.94 8.11 -51.93 -0.42 0.51 16 35 H 0.10 1.26 7.28 -51.93 -0.38 0.88 16 36 H 0.10 0.36 7.38 -51.93 -0.38 -0.03 16 37 H 0.10 0.31 8.04 -51.93 -0.42 -0.11 16 38 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.30 8.13 -51.93 -0.42 -0.12 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 3.75 8.80 -40.82 -0.36 3.39 16 43 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.10 1.05 6.20 -51.93 -0.32 0.73 16 45 H 0.08 0.28 5.88 -51.93 -0.31 -0.02 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 49 H 0.05 0.47 7.40 -51.92 -0.38 0.09 16 50 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -37.92 387.79 -8.54 -46.46 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.26 Total: 5.72 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.09 Total: 6.35 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.25 Total: -61.07 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.39 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.92 -8.54 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200673295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.768 kcal (2) G-P(sol) polarization free energy of solvation -37.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds