Wall clock time and date at job start Sat Apr 11 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48496 * 109.47306 * 239.99916 * 3 2 1 5 5 H 1.48507 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47309 * 119.99726 * 3 2 1 7 7 C 1.38813 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99882 * 197.35558 * 7 2 1 9 9 N 1.36934 * 120.00041 * 17.34748 * 7 2 1 10 10 C 1.46925 * 120.62984 * 207.67533 * 9 7 2 11 11 C 1.53198 * 108.77339 * 233.63495 * 10 9 7 12 12 C 1.53038 * 109.31201 * 305.36388 * 11 10 9 13 13 N 1.46501 * 109.45764 * 181.39000 * 12 11 10 14 14 C 1.34774 * 119.99912 * 154.97832 * 13 12 11 15 15 O 1.21281 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.50712 * 119.99799 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.46983 * 179.97438 * 16 14 13 18 18 N 1.46494 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.34780 * 120.00024 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.50695 * 120.00077 * 180.02562 * 19 18 17 22 22 H 1.09000 * 109.99151 * 56.08222 * 21 19 18 23 23 C 1.54099 * 109.87926 * 294.99968 * 21 19 18 24 24 C 1.54812 * 104.30716 * 238.47981 * 23 21 19 25 25 C 1.55225 * 101.98359 * 339.25989 * 24 23 21 26 26 O 1.43743 * 109.87923 * 177.16774 * 21 19 18 27 27 C 1.53039 * 109.52555 * 61.37780 * 12 11 10 28 28 C 1.46923 * 120.62826 * 27.70436 * 9 7 2 29 29 H 0.96998 * 119.99526 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58580 * 113.85132 * 10 9 7 31 31 H 1.08994 * 109.58589 * 353.42210 * 10 9 7 32 32 H 1.09006 * 109.49455 * 185.41657 * 11 10 9 33 33 H 1.08998 * 109.52644 * 65.33657 * 11 10 9 34 34 H 1.08999 * 109.46386 * 301.35990 * 12 11 10 35 35 H 0.97006 * 120.00022 * 334.96866 * 13 12 11 36 36 H 1.08993 * 109.46715 * 59.99872 * 16 14 13 37 37 H 1.08999 * 109.46689 * 299.99786 * 16 14 13 38 38 H 1.09004 * 109.47161 * 60.00018 * 17 16 14 39 39 H 1.09007 * 109.47113 * 300.00358 * 17 16 14 40 40 H 0.96996 * 120.00133 * 359.97438 * 18 17 16 41 41 H 1.09005 * 110.49160 * 357.22558 * 23 21 19 42 42 H 1.09001 * 110.48926 * 119.73447 * 23 21 19 43 43 H 1.09000 * 110.90759 * 97.38408 * 24 23 21 44 44 H 1.08994 * 110.90554 * 220.98825 * 24 23 21 45 45 H 1.08998 * 110.52168 * 278.38178 * 25 24 23 46 46 H 1.09007 * 110.64100 * 155.43583 * 25 24 23 47 47 H 1.09004 * 109.50226 * 58.57600 * 27 12 11 48 48 H 1.09003 * 109.49663 * 178.67240 * 27 12 11 49 49 H 1.09001 * 109.58696 * 246.15092 * 28 9 7 50 50 H 1.08994 * 109.58987 * 6.58069 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3525 10 6 1.8194 -3.6546 0.1822 11 6 2.0750 -4.6100 -0.9878 12 6 0.8195 -4.6903 -1.8593 13 7 1.0492 -5.6286 -2.9606 14 6 0.0057 -6.2494 -3.5456 15 8 -1.1234 -6.0316 -3.1600 16 6 0.2419 -7.2143 -4.6791 17 6 -1.0983 -7.7753 -5.1588 18 7 -0.8686 -8.7136 -6.2601 19 6 -1.9120 -9.3353 -6.8444 20 8 -3.0411 -9.1175 -6.4588 21 6 -1.6758 -10.3010 -7.9769 22 1 -0.9871 -11.0846 -7.6609 23 6 -1.0951 -9.5518 -9.1919 24 6 -2.1109 -9.8211 -10.3287 25 6 -2.8380 -11.0933 -9.8165 26 8 -2.9229 -10.8839 -8.3904 27 6 0.5018 -3.3052 -2.4274 28 6 0.2280 -2.3351 -1.2737 29 1 -0.4849 0.8401 -0.0004 30 1 1.0470 -4.0689 0.8301 31 1 2.7399 -3.5170 0.7493 32 1 2.3144 -5.6012 -0.6025 33 1 2.9090 -4.2404 -1.5844 34 1 -0.0197 -5.0367 -1.2561 35 1 1.9522 -5.8031 -3.2689 36 1 0.8750 -8.0317 -4.3342 37 1 0.7342 -6.6952 -5.5014 38 1 -1.7318 -6.9580 -5.5035 39 1 -1.5903 -8.2944 -4.3362 40 1 0.0343 -8.8876 -6.5688 41 1 -1.0281 -8.4836 -8.9852 42 1 -0.1151 -9.9509 -9.4535 43 1 -2.8083 -8.9898 -10.4321 44 1 -1.5981 -10.0163 -11.2704 45 1 -2.2514 -11.9845 -10.0393 46 1 -3.8339 -11.1689 -10.2533 47 1 1.3506 -2.9474 -3.0102 48 1 -0.3787 -3.3675 -3.0668 49 1 -0.6742 -2.6417 -0.7445 50 1 0.0985 -1.3269 -1.6672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230442638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:34 Heat of formation + Delta-G solvation = -132.909216 kcal Electronic energy + Delta-G solvation = -29084.004184 eV Core-core repulsion = 24917.164117 eV Total energy + Delta-G solvation = -4166.840067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43737 -40.95690 -39.44027 -38.95728 -36.38084 -35.95062 -33.97087 -33.29817 -32.40972 -31.69681 -31.18601 -30.11704 -27.08359 -25.56831 -24.15459 -23.90756 -23.20685 -22.68634 -21.69627 -21.32807 -20.78140 -18.90199 -18.61102 -18.10063 -17.53638 -17.20592 -17.06790 -16.88389 -16.62862 -16.04626 -15.78686 -15.59675 -15.54012 -15.35811 -14.90359 -14.69719 -14.60113 -14.56354 -14.36128 -14.09803 -14.03539 -13.21018 -13.03904 -12.91502 -12.77986 -12.68541 -12.64662 -12.55863 -12.45593 -12.17569 -12.12699 -12.08188 -11.88158 -11.85824 -11.53478 -11.39469 -11.19790 -10.88252 -10.57705 -10.53165 -10.23455 -9.97503 -8.72467 -7.87752 -5.33969 1.47510 1.49609 1.50105 1.57052 1.67321 1.72477 2.36763 2.51634 3.03597 3.28062 3.46481 3.60564 3.66261 3.75181 3.86830 3.89919 4.03128 4.04132 4.05702 4.11757 4.27488 4.34344 4.42893 4.47675 4.52696 4.66794 4.73388 4.78490 4.80710 4.84218 4.88548 4.92005 4.93802 5.00775 5.06646 5.08590 5.13718 5.14955 5.30081 5.32099 5.46189 5.58086 5.63615 5.69104 5.79786 6.37678 6.49723 6.65072 7.12628 7.19609 7.35606 7.84100 8.36690 9.19162 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.001644 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.410732 B =17026.077921 C =17318.052284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.139 3.861 11 C -0.119 4.119 12 C 0.160 3.840 13 N -0.706 5.706 14 C 0.506 3.494 15 O -0.594 6.594 16 C -0.131 4.131 17 C 0.138 3.862 18 N -0.705 5.705 19 C 0.502 3.498 20 O -0.583 6.583 21 C 0.061 3.939 22 H 0.129 0.871 23 C -0.142 4.142 24 C -0.154 4.154 25 C 0.036 3.964 26 O -0.393 6.393 27 C -0.130 4.130 28 C 0.181 3.819 29 H 0.249 0.751 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.419 0.581 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.424 0.576 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.042 0.958 49 H -0.015 1.015 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -24.867 -22.730 34.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.093 0.907 9 N -0.332 5.332 10 C 0.013 3.987 11 C -0.159 4.159 12 C 0.055 3.945 13 N -0.358 5.358 14 C 0.293 3.707 15 O -0.475 6.475 16 C -0.171 4.171 17 C 0.014 3.986 18 N -0.360 5.360 19 C 0.289 3.711 20 O -0.462 6.462 21 C 0.000 4.000 22 H 0.146 0.854 23 C -0.179 4.179 24 C -0.192 4.192 25 C -0.040 4.040 26 O -0.312 6.312 27 C -0.170 4.170 28 C 0.054 3.946 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.257 0.743 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.003 0.997 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.024 -24.485 -22.020 33.670 hybrid contribution 0.160 1.366 0.258 1.399 sum 7.183 -23.119 -21.762 32.552 Atomic orbital electron populations 1.70218 1.06994 1.25925 1.55477 1.25891 0.95963 1.01891 1.01325 0.85294 0.77449 0.78889 0.78535 1.20099 1.22554 1.19792 1.19562 0.93218 0.85846 1.40625 0.90686 1.44340 1.35582 1.02578 1.50720 1.21072 0.97769 0.85673 0.94205 1.22116 0.96185 1.00389 0.97185 1.20624 0.98443 0.87793 0.87670 1.45970 1.10391 1.43832 1.35622 1.21186 0.84296 0.81208 0.83965 1.90770 1.25053 1.65918 1.65711 1.21740 0.98181 0.99790 0.97367 1.20799 0.97107 0.91887 0.88856 1.45616 1.10334 1.44455 1.35622 1.21314 0.84540 0.81425 0.83854 1.90742 1.25419 1.64873 1.65118 1.22879 0.87926 0.95287 0.93936 0.85396 1.23034 1.01446 1.01517 0.91938 1.23215 0.98244 0.97792 0.99937 1.23940 1.02593 0.98437 0.79036 1.88996 1.35642 1.81770 1.24792 1.22293 1.00296 0.96003 0.98403 1.20479 0.87751 0.97495 0.88889 0.94230 0.97392 0.91327 0.88893 0.90281 0.93007 0.74324 0.84003 0.84440 0.93627 0.93335 0.73709 0.90365 0.85423 0.92003 0.86786 0.89299 0.88690 0.91660 0.93895 0.99716 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 11.19 21.65 0.24 -57.06 16 2 C -0.06 -3.14 4.91 84.86 0.42 -2.72 16 3 Si 0.97 44.82 29.59 68.60 2.03 46.85 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.26 -14.28 9.58 84.03 0.81 -13.47 16 8 H 0.08 3.86 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -30.49 2.99 -699.10 -2.09 -32.59 16 10 C 0.14 5.49 6.52 86.36 0.56 6.05 16 11 C -0.12 -3.45 5.55 30.67 0.17 -3.28 16 12 C 0.16 5.17 2.42 45.02 0.11 5.28 16 13 N -0.71 -15.62 5.08 -442.40 -2.25 -17.86 16 14 C 0.51 12.42 7.79 87.66 0.68 13.11 16 15 O -0.59 -22.27 15.64 -3.03 -0.05 -22.32 16 16 C -0.13 -1.56 5.81 29.85 0.17 -1.39 16 17 C 0.14 2.77 4.96 86.38 0.43 3.20 16 18 N -0.70 -9.41 5.53 -463.06 -2.56 -11.97 16 19 C 0.50 10.65 6.95 87.65 0.61 11.26 16 20 O -0.58 -20.37 16.53 15.68 0.26 -20.11 16 21 C 0.06 0.79 3.84 30.22 0.12 0.91 16 22 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 23 C -0.14 -0.84 6.60 31.58 0.21 -0.64 16 24 C -0.15 -1.13 7.17 31.98 0.23 -0.90 16 25 C 0.04 0.38 7.72 72.75 0.56 0.94 16 26 O -0.39 -8.03 10.74 -130.26 -1.40 -9.43 16 27 C -0.13 -5.12 5.65 30.67 0.17 -4.95 16 28 C 0.18 9.17 5.31 86.37 0.46 9.63 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 32 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 35 H 0.42 5.46 8.60 -92.70 -0.80 4.67 16 36 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 40 H 0.42 1.26 8.47 -92.71 -0.79 0.47 16 41 H 0.08 0.58 7.69 -2.38 -0.02 0.56 16 42 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 48 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 49 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 50 H 0.05 3.15 6.04 -2.39 -0.01 3.13 16 Total: -1.00 -91.41 402.10 -0.74 -92.16 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -0.64 Total: 9.30 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.71 Total: 23.03 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.66 Total: -119.48 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -1.19 Total: -51.85 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -91.41 -0.74 -92.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230442638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.752 kcal (2) G-P(sol) polarization free energy of solvation -91.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds