Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08997 * 112.84920 * 336.19748 * 14 13 12 16 16 C 1.53786 * 113.61249 * 107.50115 * 14 13 12 17 17 C 1.53787 * 87.07849 * 89.11535 * 16 14 13 18 18 H 1.09001 * 113.68663 * 270.86963 * 17 16 14 19 19 C 1.53000 * 113.61127 * 139.97926 * 17 16 14 20 20 N 1.46501 * 109.46908 * 87.50335 * 19 17 16 21 21 C 1.34786 * 119.99751 * 180.02562 * 20 19 17 22 22 O 1.21281 * 119.99713 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.99917 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47858 * 54.99212 * 23 21 20 25 25 C 1.53096 * 109.47462 * 294.96964 * 23 21 20 26 26 C 1.53175 * 109.15927 * 182.41774 * 25 23 21 27 27 C 1.53182 * 109.04496 * 56.96558 * 26 25 23 28 28 C 1.53094 * 109.16354 * 303.02779 * 27 26 25 29 29 O 1.42894 * 109.47995 * 175.01747 * 23 21 20 30 30 C 1.53776 * 113.61089 * 204.99857 * 14 13 12 31 31 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 34 34 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 35 35 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 36 36 H 1.08997 * 113.61023 * 203.66279 * 16 14 13 37 37 H 1.08994 * 113.61350 * 334.56611 * 16 14 13 38 38 H 1.09003 * 109.47121 * 207.50074 * 19 17 16 39 39 H 1.09002 * 109.47317 * 327.50096 * 19 17 16 40 40 H 0.96998 * 120.00275 * 359.97438 * 20 19 17 41 41 H 1.08998 * 109.52702 * 302.31635 * 25 23 21 42 42 H 1.09000 * 109.52305 * 62.50907 * 25 23 21 43 43 H 1.08997 * 109.53976 * 297.10092 * 26 25 23 44 44 H 1.09000 * 109.62244 * 176.88058 * 26 25 23 45 45 H 1.08998 * 109.52759 * 183.11726 * 27 26 25 46 46 H 1.09003 * 109.52159 * 62.92848 * 27 26 25 47 47 H 1.08999 * 109.47388 * 297.62013 * 28 27 26 48 48 H 1.09003 * 109.48200 * 177.59336 * 28 27 26 49 49 H 1.08995 * 113.61668 * 25.43281 * 30 14 13 50 50 H 1.09004 * 113.61202 * 156.25199 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 7 2.1980 -5.9795 -0.0184 14 6 1.4976 -7.2709 -0.0252 15 1 0.4879 -7.2068 0.3802 16 6 1.5768 -8.0075 -1.3729 17 6 2.8729 -8.6528 -0.8545 18 1 3.7694 -8.0735 -1.0757 19 6 3.0132 -10.1302 -1.2266 20 7 3.6490 -10.2443 -2.5416 21 6 3.8754 -11.4602 -3.0774 22 8 3.5533 -12.4597 -2.4707 23 6 4.5299 -11.5776 -4.4298 24 1 5.4779 -11.0396 -4.4227 25 6 3.6098 -10.9771 -5.4959 26 6 4.2545 -11.1544 -6.8740 27 6 4.5254 -12.6432 -7.1113 28 6 5.4101 -13.1792 -5.9827 29 8 4.7659 -12.9552 -4.7270 30 6 2.3263 -8.4242 0.5646 31 1 -0.4850 0.8401 0.0004 32 1 0.3532 -2.3907 -0.0005 33 1 0.6172 -4.9252 0.8769 34 1 0.6164 -4.9162 -0.9030 35 1 2.8329 -5.9163 0.7632 36 1 0.7667 -8.7197 -1.5294 37 1 1.7294 -7.3446 -2.2245 38 1 3.6270 -10.6359 -0.4812 39 1 2.0265 -10.5922 -1.2588 40 1 3.9062 -9.4449 -3.0269 41 1 2.6471 -11.4877 -5.4759 42 1 3.4644 -9.9156 -5.2956 43 1 5.1938 -10.6025 -6.9108 44 1 3.5808 -10.7791 -7.6444 45 1 5.0346 -12.7733 -8.0663 46 1 3.5813 -13.1878 -7.1239 47 1 6.3696 -12.6622 -5.9963 48 1 5.5710 -14.2481 -6.1233 49 1 3.0839 -8.0977 1.2769 50 1 1.7210 -9.2497 0.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263858787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = -107.778187 kcal Electronic energy + Delta-G solvation = -28682.215885 eV Core-core repulsion = 24516.465581 eV Total energy + Delta-G solvation = -4165.750304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62147 -39.61721 -38.60628 -38.01840 -35.10914 -34.17050 -33.95627 -33.13661 -31.88596 -31.21846 -28.43263 -26.52215 -25.84938 -25.44754 -24.35076 -23.89889 -22.20329 -21.09127 -20.61092 -19.31223 -19.04924 -17.93616 -17.78213 -17.04999 -16.19967 -16.09855 -15.93366 -15.50340 -15.36070 -15.06385 -15.00406 -14.74617 -14.62846 -14.39434 -14.06886 -13.84219 -13.53554 -13.41734 -13.11489 -13.06346 -12.50972 -12.48286 -12.25419 -11.95380 -11.72804 -11.68019 -11.54739 -11.53503 -11.51430 -11.09962 -10.94698 -10.90631 -10.60030 -10.36499 -10.28534 -10.23734 -10.00592 -9.79345 -9.54451 -9.28272 -8.46549 -8.09802 -7.98332 -6.44209 -3.85038 2.35897 2.54741 3.14368 3.25107 3.32213 3.64204 3.88162 4.02842 4.19037 4.25113 4.29978 4.33672 4.46901 4.47921 4.54112 4.62155 4.69084 4.72673 4.77478 4.95508 5.07977 5.17559 5.19283 5.21745 5.23617 5.30036 5.43325 5.43976 5.52373 5.53427 5.56301 5.59392 5.65663 5.71626 5.78038 5.82910 5.92279 6.04904 6.10632 6.18556 6.27839 6.35359 6.67391 7.23809 7.24320 7.53041 7.63413 7.97545 8.04062 8.58619 9.15491 9.51894 10.03084 10.73548 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.001669 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.438032 B =16770.761149 C =17866.476407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.052 3.948 13 N -0.650 5.650 14 C 0.061 3.939 15 H 0.058 0.942 16 C -0.127 4.127 17 C -0.115 4.115 18 H 0.104 0.896 19 C 0.130 3.870 20 N -0.724 5.724 21 C 0.518 3.482 22 O -0.522 6.522 23 C 0.074 3.926 24 H 0.084 0.916 25 C -0.146 4.146 26 C -0.122 4.122 27 C -0.159 4.159 28 C 0.059 3.941 29 O -0.355 6.355 30 C -0.135 4.135 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.351 0.649 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -23.192 -10.430 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.284 5.284 14 C -0.050 4.050 15 H 0.076 0.924 16 C -0.166 4.166 17 C -0.133 4.133 18 H 0.122 0.878 19 C 0.007 3.993 20 N -0.377 5.377 21 C 0.303 3.697 22 O -0.397 6.397 23 C 0.013 3.987 24 H 0.102 0.898 25 C -0.184 4.184 26 C -0.159 4.159 27 C -0.197 4.197 28 C -0.018 4.018 29 O -0.273 6.273 30 C -0.173 4.173 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.172 0.828 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.045 -23.898 -10.516 26.592 hybrid contribution -0.426 1.506 0.402 1.615 sum 4.619 -22.392 -10.115 25.001 Atomic orbital electron populations 1.69623 1.05943 1.28068 1.50629 1.25271 0.95641 0.99745 0.97321 0.85797 0.79701 0.81115 0.77712 1.19222 1.20744 1.20760 1.19756 0.93400 0.82229 1.47512 0.87861 1.41873 1.09216 1.04625 1.64308 1.19818 0.88382 0.84737 0.84474 1.90520 1.13760 1.87090 1.55473 1.21718 0.94333 0.90830 1.01191 1.59940 1.18337 0.99081 1.50996 1.22548 0.96397 0.89052 0.96978 0.92363 1.23116 0.96474 0.98751 0.98239 1.22722 0.99616 0.93723 0.97253 0.87786 1.21468 0.97864 0.96604 0.83358 1.45920 1.62914 1.07824 1.21047 1.20152 0.79225 0.83588 0.86750 1.90726 1.50409 1.36368 1.62207 1.21892 0.98776 0.85353 0.92677 0.89846 1.22150 0.99754 1.01890 0.94625 1.21591 1.01368 0.96375 0.96598 1.22229 1.01548 0.96661 0.99264 1.22672 0.94478 1.01751 0.82870 1.88060 1.80080 1.22123 1.37044 1.23193 0.99679 0.98459 0.95987 0.91914 0.77457 0.93806 0.89627 0.82776 0.90231 0.90509 0.91462 0.91371 0.76259 0.90328 0.89964 0.91384 0.90789 0.90579 0.90811 0.92934 0.88336 0.90792 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.09 5.29 -10.96 -0.06 -14.14 16 10 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 11 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 13 N -0.65 -9.80 6.07 -107.13 -0.65 -10.46 16 14 C 0.06 0.69 4.22 -66.90 -0.28 0.41 16 15 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 16 C -0.13 -1.27 7.43 -25.91 -0.19 -1.46 16 17 C -0.11 -1.05 3.67 -89.80 -0.33 -1.38 16 18 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 19 C 0.13 1.20 5.51 -4.04 -0.02 1.18 16 20 N -0.72 -6.32 5.52 -60.29 -0.33 -6.65 16 21 C 0.52 5.77 7.18 -10.98 -0.08 5.69 16 22 O -0.52 -8.17 16.51 -14.30 -0.24 -8.41 16 23 C 0.07 0.64 3.05 -27.83 -0.09 0.56 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.15 -0.97 5.37 -26.59 -0.14 -1.12 16 26 C -0.12 -0.65 6.03 -26.55 -0.16 -0.81 16 27 C -0.16 -0.87 6.14 -26.59 -0.16 -1.04 16 28 C 0.06 0.40 6.84 37.21 0.25 0.65 16 29 O -0.36 -3.77 9.94 -55.09 -0.55 -4.32 16 30 C -0.13 -1.26 7.32 -25.92 -0.19 -1.45 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 32 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 33 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.35 5.52 8.09 -39.29 -0.32 5.21 16 36 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 40 H 0.40 2.65 8.32 -40.82 -0.34 2.31 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.43 7.99 -51.93 -0.41 0.02 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 50 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 408.01 15.07 6.15 6.15 Total: -1.00 -34.21 408.01 -10.09 -44.31 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -8.46 Total: 12.49 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.75 Total: 4.24 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.32 Total: -54.82 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.70 Total: -28.18 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.21 -10.09 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263858787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.472 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds