Wall clock time and date at job start Sat Apr 11 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 N 1.46896 * 109.47254 * 180.02562 * 12 10 9 14 14 C 1.46907 * 110.99733 * 180.02562 * 13 12 10 15 15 H 1.08997 * 112.84920 * 336.19748 * 14 13 12 16 16 C 1.53786 * 113.61249 * 107.50115 * 14 13 12 17 17 C 1.53787 * 87.07849 * 89.11535 * 16 14 13 18 18 H 1.09001 * 113.68663 * 270.86963 * 17 16 14 19 19 C 1.53000 * 113.61127 * 139.97926 * 17 16 14 20 20 N 1.46501 * 109.46908 * 87.50335 * 19 17 16 21 21 C 1.34786 * 119.99751 * 180.02562 * 20 19 17 22 22 O 1.21281 * 119.99713 * 359.97438 * 21 20 19 23 23 C 1.50702 * 119.99917 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.47858 * 54.99212 * 23 21 20 25 25 C 1.53096 * 109.47462 * 294.96964 * 23 21 20 26 26 C 1.53175 * 109.15927 * 182.41774 * 25 23 21 27 27 C 1.53182 * 109.04496 * 56.96558 * 26 25 23 28 28 C 1.53094 * 109.16354 * 303.02779 * 27 26 25 29 29 O 1.42894 * 109.47995 * 175.01747 * 23 21 20 30 30 C 1.53776 * 113.61089 * 204.99857 * 14 13 12 31 31 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 34 34 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 35 35 H 1.00897 * 111.00226 * 56.04425 * 13 12 10 36 36 H 1.08997 * 113.61023 * 203.66279 * 16 14 13 37 37 H 1.08994 * 113.61350 * 334.56611 * 16 14 13 38 38 H 1.09003 * 109.47121 * 207.50074 * 19 17 16 39 39 H 1.09002 * 109.47317 * 327.50096 * 19 17 16 40 40 H 0.96998 * 120.00275 * 359.97438 * 20 19 17 41 41 H 1.08998 * 109.52702 * 302.31635 * 25 23 21 42 42 H 1.09000 * 109.52305 * 62.50907 * 25 23 21 43 43 H 1.08997 * 109.53976 * 297.10092 * 26 25 23 44 44 H 1.09000 * 109.62244 * 176.88058 * 26 25 23 45 45 H 1.08998 * 109.52759 * 183.11726 * 27 26 25 46 46 H 1.09003 * 109.52159 * 62.92848 * 27 26 25 47 47 H 1.08999 * 109.47388 * 297.62013 * 28 27 26 48 48 H 1.09003 * 109.48200 * 177.59336 * 28 27 26 49 49 H 1.08995 * 113.61668 * 25.43281 * 30 14 13 50 50 H 1.09004 * 113.61202 * 156.25199 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 7 2.1980 -5.9795 -0.0184 14 6 1.4976 -7.2709 -0.0252 15 1 0.4879 -7.2068 0.3802 16 6 1.5768 -8.0075 -1.3729 17 6 2.8729 -8.6528 -0.8545 18 1 3.7694 -8.0735 -1.0757 19 6 3.0132 -10.1302 -1.2266 20 7 3.6490 -10.2443 -2.5416 21 6 3.8754 -11.4602 -3.0774 22 8 3.5533 -12.4597 -2.4707 23 6 4.5299 -11.5776 -4.4298 24 1 5.4779 -11.0396 -4.4227 25 6 3.6098 -10.9771 -5.4959 26 6 4.2545 -11.1544 -6.8740 27 6 4.5254 -12.6432 -7.1113 28 6 5.4101 -13.1792 -5.9827 29 8 4.7659 -12.9552 -4.7270 30 6 2.3263 -8.4242 0.5646 31 1 -0.4850 0.8401 0.0004 32 1 0.3532 -2.3907 -0.0005 33 1 0.6172 -4.9252 0.8769 34 1 0.6164 -4.9162 -0.9030 35 1 2.8329 -5.9163 0.7632 36 1 0.7667 -8.7197 -1.5294 37 1 1.7294 -7.3446 -2.2245 38 1 3.6270 -10.6359 -0.4812 39 1 2.0265 -10.5922 -1.2588 40 1 3.9062 -9.4449 -3.0269 41 1 2.6471 -11.4877 -5.4759 42 1 3.4644 -9.9156 -5.2956 43 1 5.1938 -10.6025 -6.9108 44 1 3.5808 -10.7791 -7.6444 45 1 5.0346 -12.7733 -8.0663 46 1 3.5813 -13.1878 -7.1239 47 1 6.3696 -12.6622 -5.9963 48 1 5.5710 -14.2481 -6.1233 49 1 3.0839 -8.0977 1.2769 50 1 1.7210 -9.2497 0.9390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263858787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:44 Heat of formation + Delta-G solvation = -133.117084 kcal Electronic energy + Delta-G solvation = -28683.314662 eV Core-core repulsion = 24516.465581 eV Total energy + Delta-G solvation = -4166.849081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38194 -40.55889 -39.86549 -39.26665 -36.21623 -35.82485 -34.70990 -34.27450 -33.22946 -32.48789 -29.38673 -27.91653 -26.61961 -26.37944 -25.48778 -24.85028 -23.05610 -21.79263 -21.20763 -21.09312 -19.96100 -19.90273 -18.53930 -17.81300 -17.66128 -16.89738 -16.83442 -16.65575 -16.44124 -16.28161 -15.95269 -15.82742 -15.53875 -15.43952 -15.18254 -15.04928 -14.79849 -14.38403 -14.02412 -13.78620 -13.63437 -13.53630 -13.38300 -13.20215 -13.11212 -12.85120 -12.53497 -12.44363 -12.39555 -12.20214 -12.11160 -11.96708 -11.74246 -11.55319 -11.50024 -11.37163 -11.10979 -10.74316 -10.48908 -10.30833 -10.10262 -10.00970 -9.27845 -8.46517 -5.95114 1.37050 1.42565 1.51625 1.56571 1.84553 2.05919 2.29383 2.90370 3.02968 3.21098 3.48682 3.55856 3.65436 3.75370 3.81369 3.88369 3.90013 4.00712 4.01921 4.04340 4.19330 4.30389 4.41972 4.47555 4.48255 4.57818 4.62477 4.66412 4.73293 4.78420 4.84296 4.84566 4.90106 4.97011 5.01082 5.07958 5.15104 5.21778 5.29510 5.34921 5.39772 5.42172 5.53035 5.94090 6.09652 6.16839 6.44961 6.51901 6.60507 7.13135 7.17896 7.56992 8.12012 8.71046 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.001669 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.438032 B =16770.761149 C =17866.476407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.067 3.933 13 N -0.661 5.661 14 C 0.053 3.947 15 H 0.068 0.932 16 C -0.121 4.121 17 C -0.103 4.103 18 H 0.095 0.905 19 C 0.135 3.865 20 N -0.710 5.710 21 C 0.514 3.486 22 O -0.575 6.575 23 C 0.075 3.925 24 H 0.106 0.894 25 C -0.142 4.142 26 C -0.121 4.121 27 C -0.157 4.157 28 C 0.052 3.948 29 O -0.391 6.391 30 C -0.127 4.127 31 H 0.277 0.723 32 H 0.396 0.604 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.346 0.654 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.415 0.585 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.071 0.929 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -22.985 -11.300 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.065 4.065 13 N -0.294 5.294 14 C -0.057 4.057 15 H 0.086 0.914 16 C -0.159 4.159 17 C -0.122 4.122 18 H 0.113 0.887 19 C 0.012 3.988 20 N -0.364 5.364 21 C 0.300 3.700 22 O -0.454 6.454 23 C 0.014 3.986 24 H 0.123 0.877 25 C -0.180 4.180 26 C -0.158 4.158 27 C -0.195 4.195 28 C -0.024 4.024 29 O -0.310 6.310 30 C -0.165 4.165 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.252 0.748 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.122 0.878 49 H 0.090 0.910 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.890 -23.672 -11.406 26.728 hybrid contribution -0.373 1.385 0.676 1.585 sum 4.517 -22.288 -10.730 25.145 Atomic orbital electron populations 1.69680 1.06825 1.29210 1.50417 1.26040 0.96540 1.02413 0.96313 0.84870 0.78046 0.77124 0.78291 1.19772 1.19649 1.19655 1.19708 0.92714 0.84047 1.49817 0.90284 1.41945 1.09338 1.04749 1.65068 1.20892 0.88261 0.86162 0.82112 1.90489 1.15817 1.87976 1.56633 1.21563 0.94018 0.88047 1.02882 1.59941 1.18441 1.00044 1.51004 1.22654 0.96835 0.87766 0.98416 0.91383 1.23105 0.97220 0.98567 0.97011 1.22576 0.99038 0.93270 0.97270 0.88668 1.21389 0.97625 0.96427 0.83394 1.45853 1.61890 1.07804 1.20823 1.20708 0.78525 0.83278 0.87444 1.90694 1.52870 1.38092 1.63757 1.21995 0.99866 0.85178 0.91584 0.87670 1.22142 0.98575 1.02350 0.94934 1.21622 1.02070 0.96368 0.95738 1.22217 1.00941 0.96641 0.99661 1.22891 0.95086 1.02519 0.81900 1.88012 1.80766 1.23287 1.38963 1.23192 0.99445 0.98012 0.95859 0.91329 0.76997 0.91682 0.88026 0.83430 0.88642 0.91647 0.92173 0.91585 0.74804 0.92027 0.88378 0.90057 0.89926 0.88649 0.92034 0.91486 0.87841 0.91009 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.67 0.28 -48.84 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 10 C 0.44 20.31 7.82 87.66 0.69 21.00 16 11 O -0.62 -33.69 15.78 -3.07 -0.05 -33.74 16 12 C 0.07 2.20 6.01 85.56 0.51 2.72 16 13 N -0.66 -19.13 6.07 -492.85 -2.99 -22.12 16 14 C 0.05 1.09 4.22 45.44 0.19 1.29 16 15 H 0.07 1.31 7.87 -2.39 -0.02 1.30 16 16 C -0.12 -2.16 7.43 31.12 0.23 -1.93 16 17 C -0.10 -1.73 3.67 -10.27 -0.04 -1.77 16 18 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.13 2.35 5.51 86.38 0.48 2.83 16 20 N -0.71 -11.74 5.52 -463.04 -2.56 -14.30 16 21 C 0.51 11.36 7.18 87.66 0.63 11.99 16 22 O -0.58 -18.48 16.51 15.95 0.26 -18.22 16 23 C 0.07 1.23 3.05 29.88 0.09 1.32 16 24 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 25 C -0.14 -1.71 5.37 30.68 0.16 -1.54 16 26 C -0.12 -1.04 6.03 30.71 0.19 -0.86 16 27 C -0.16 -1.49 6.14 30.69 0.19 -1.30 16 28 C 0.05 0.64 6.84 72.01 0.49 1.14 16 29 O -0.39 -8.27 9.94 -130.00 -1.29 -9.57 16 30 C -0.13 -2.12 7.32 31.12 0.23 -1.89 16 31 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 33 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.35 10.64 8.09 -89.70 -0.73 9.92 16 36 H 0.10 1.44 7.90 -2.39 -0.02 1.42 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.22 7.84 -2.39 -0.02 1.20 16 40 H 0.42 4.82 8.32 -92.71 -0.77 4.05 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.10 0.83 7.99 -2.39 -0.02 0.81 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.27 7.91 -2.39 -0.02 1.25 16 50 H 0.11 1.42 8.10 -2.38 -0.02 1.40 16 Total: -1.00 -75.42 408.01 -1.88 -77.31 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: -1.27 Total: 40.79 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.32 Total: 14.83 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -6.89 Total: -115.85 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -1.08 Total: -61.52 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.42 -1.88 -77.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263858787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.811 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds