Wall clock time and date at job start Sat Apr 11 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99683 * 2 1 4 4 H 1.48498 * 109.47063 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47248 * 30.00365 * 3 2 1 6 6 H 1.48503 * 109.46941 * 150.00276 * 3 2 1 7 7 C 1.38942 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99900 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00339 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00374 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00029 * 180.02562 * 10 9 7 13 13 N 1.46907 * 109.47103 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99892 * 180.02562 * 13 12 10 15 15 H 1.09002 * 112.84775 * 336.19561 * 14 13 12 16 16 C 1.53779 * 113.69198 * 107.46678 * 14 13 12 17 17 C 1.53783 * 87.07914 * 139.98952 * 16 14 13 18 18 H 1.09003 * 113.68746 * 220.00722 * 17 16 14 19 19 N 1.46499 * 113.61254 * 89.12073 * 17 16 14 20 20 C 1.34777 * 120.00199 * 107.50239 * 19 17 16 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 17 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 17 23 23 H 1.08999 * 109.63044 * 60.11886 * 22 20 19 24 24 C 1.50287 * 109.63196 * 180.72619 * 22 20 19 25 25 C 1.54606 * 112.95215 * 211.78200 * 24 22 20 26 26 C 1.54352 * 111.45207 * 319.00051 * 25 24 22 27 27 O 1.39959 * 112.57181 * 319.31153 * 26 25 24 28 28 C 1.44233 * 112.36328 * 97.12160 * 27 26 25 29 29 C 1.45977 * 112.10854 * 277.40898 * 28 27 26 30 30 C 1.53779 * 113.61174 * 205.00484 * 14 13 12 31 31 H 0.96997 * 119.99952 * 359.97438 * 1 2 3 32 32 H 0.97002 * 119.99279 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47049 * 60.00021 * 12 10 9 34 34 H 1.08995 * 109.47141 * 299.99985 * 12 10 9 35 35 H 1.00892 * 111.00007 * 303.95356 * 13 12 10 36 36 H 1.09002 * 113.60824 * 25.44262 * 16 14 13 37 37 H 1.08996 * 113.61384 * 254.53940 * 16 14 13 38 38 H 0.97000 * 119.99484 * 287.49336 * 19 17 16 39 39 H 1.09001 * 108.78624 * 332.67716 * 24 22 20 40 40 H 1.09002 * 108.78541 * 90.88854 * 24 22 20 41 41 H 1.08999 * 109.07890 * 198.49564 * 25 24 22 42 42 H 1.09001 * 109.02916 * 79.47641 * 25 24 22 43 43 H 1.09009 * 108.86109 * 198.51415 * 26 25 24 44 44 H 1.09001 * 108.78271 * 80.05875 * 26 25 24 45 45 H 1.09001 * 108.95225 * 156.72833 * 28 27 26 46 46 H 1.09005 * 108.95096 * 38.09120 * 28 27 26 47 47 H 1.09001 * 109.02723 * 299.48838 * 29 28 27 48 48 H 1.09002 * 108.97197 * 180.60735 * 29 28 27 49 49 H 1.08997 * 113.61904 * 105.38571 * 30 14 13 50 50 H 1.09003 * 113.61234 * 334.48186 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4984 -7.2708 -0.0028 15 1 0.4886 -7.2050 0.4023 16 6 1.5758 -8.0145 -1.3466 17 6 1.7614 -9.3054 -0.5318 18 1 2.4935 -9.9911 -0.9584 19 7 0.5008 -9.9647 -0.1818 20 6 0.1452 -11.1095 -0.7979 21 8 0.8687 -11.5935 -1.6425 22 6 -1.1544 -11.7843 -0.4423 23 1 -1.9856 -11.1097 -0.6476 24 6 -1.3080 -13.0421 -1.2504 25 6 -2.7825 -13.3724 -1.5775 26 6 -3.7021 -13.1085 -0.3662 27 8 -3.1284 -13.5175 0.8431 28 6 -2.4979 -12.4281 1.5475 29 6 -1.1503 -12.1614 1.0537 30 6 2.3271 -8.4214 0.5922 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3906 -0.0005 33 1 0.6176 -4.9204 -0.8914 34 1 0.6170 -4.9208 0.8886 35 1 2.8335 -5.9120 -0.7829 36 1 2.4470 -7.7464 -1.9443 37 1 0.6463 -7.9868 -1.9151 38 1 -0.0778 -9.5774 0.4935 39 1 -0.7582 -12.9283 -2.1847 40 1 -0.8777 -13.8731 -0.6915 41 1 -2.8581 -14.4223 -1.8603 42 1 -3.1082 -12.7538 -2.4138 43 1 -4.6391 -13.6462 -0.5114 44 1 -3.9140 -12.0406 -0.3125 45 1 -2.4439 -12.6761 2.6075 46 1 -3.1038 -11.5302 1.4261 47 1 -0.5376 -13.0519 1.1940 48 1 -0.7193 -11.3399 1.6260 49 1 2.0041 -8.7223 1.5888 50 1 3.4036 -8.2646 0.5245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265476027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:08 Heat of formation + Delta-G solvation = -128.094437 kcal Electronic energy + Delta-G solvation = -29116.103624 eV Core-core repulsion = 24949.472341 eV Total energy + Delta-G solvation = -4166.631283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70343 -40.55294 -39.98555 -39.21365 -36.13791 -35.54841 -35.43073 -33.87224 -33.29526 -32.99350 -28.77295 -28.29171 -26.68180 -26.64773 -25.97972 -24.06839 -22.98153 -22.21227 -21.19038 -20.70749 -20.40987 -19.87480 -18.60533 -17.83949 -17.54678 -17.11874 -16.90004 -16.51022 -16.35071 -16.27591 -16.09508 -15.98818 -15.63792 -15.46307 -15.10755 -14.83203 -14.35208 -14.28148 -14.12382 -13.89073 -13.54774 -13.50752 -13.46330 -13.27245 -13.09799 -12.83235 -12.63777 -12.43842 -12.41156 -12.13846 -12.12249 -11.76179 -11.72787 -11.61906 -11.50969 -11.36148 -11.30022 -10.95400 -10.43580 -10.33055 -10.08908 -10.01414 -9.23541 -8.46919 -5.95469 1.37917 1.42004 1.54544 1.55002 2.05665 2.08590 2.29267 2.95536 3.00352 3.20486 3.44223 3.55900 3.60448 3.64735 3.75411 3.80997 3.97274 4.06823 4.08239 4.13570 4.24995 4.32776 4.41470 4.51685 4.52513 4.57400 4.59310 4.61342 4.70449 4.75856 4.80644 4.85724 4.92876 4.96721 5.03132 5.10575 5.12885 5.14568 5.22363 5.23668 5.30962 5.41017 5.56114 5.93692 6.16934 6.37545 6.39827 6.52477 6.60400 7.12817 7.22104 7.56624 8.12130 8.70355 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.001704 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.894038 B =16426.759010 C =17139.273589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.069 3.931 15 H 0.115 0.885 16 C -0.177 4.177 17 C 0.125 3.875 18 H 0.086 0.914 19 N -0.696 5.696 20 C 0.519 3.481 21 O -0.583 6.583 22 C -0.098 4.098 23 H 0.120 0.880 24 C -0.108 4.108 25 C -0.143 4.143 26 C 0.053 3.947 27 O -0.391 6.391 28 C 0.054 3.946 29 C -0.138 4.138 30 C -0.123 4.123 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.345 0.655 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -25.706 2.028 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.041 4.041 15 H 0.133 0.867 16 C -0.217 4.217 17 C 0.018 3.982 18 H 0.104 0.896 19 N -0.348 5.348 20 C 0.307 3.693 21 O -0.462 6.462 22 C -0.119 4.119 23 H 0.138 0.862 24 C -0.146 4.146 25 C -0.181 4.181 26 C -0.024 4.024 27 O -0.310 6.310 28 C -0.022 4.022 29 C -0.176 4.176 30 C -0.162 4.162 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.165 0.835 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.075 -26.044 2.205 28.012 hybrid contribution -0.266 1.299 -1.077 1.708 sum -10.342 -24.744 1.129 26.842 Atomic orbital electron populations 1.69663 1.06753 1.29290 1.50324 1.26024 0.96569 1.02372 0.96310 0.84940 0.77897 0.76960 0.78614 1.19697 1.19480 1.19863 1.19658 0.92691 0.84111 1.49926 0.90421 1.41937 1.09345 1.04711 1.65050 1.20982 0.88292 0.86302 0.82119 1.90495 1.15988 1.88010 1.56682 1.21587 0.94077 0.87952 1.03067 1.60062 1.18507 1.00627 1.51025 1.23259 0.98177 0.87048 0.95629 0.86744 1.24140 1.02750 0.96965 0.97893 1.21584 0.86558 0.92781 0.97231 0.89577 1.45576 1.22384 1.24472 1.42363 1.21050 0.88059 0.80170 0.80025 1.90685 1.55129 1.65834 1.34569 1.21045 0.94808 0.98259 0.97813 0.86241 1.21193 0.97332 0.95928 1.00165 1.22620 0.94020 1.02501 0.98958 1.22468 0.95487 1.00631 0.83832 1.87784 1.73824 1.35619 1.33785 1.21721 0.92649 0.90456 0.97351 1.21208 0.99972 1.03392 0.92990 1.23376 1.01174 0.93174 0.98433 0.91289 0.76916 0.91681 0.87392 0.83539 0.89559 0.91207 0.74619 0.92430 0.92718 0.91522 0.90323 0.89526 0.91533 0.87833 0.90610 0.91633 0.88274 0.89121 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 3 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.91 5.29 -306.99 -1.62 -30.53 16 10 C 0.44 20.26 7.82 87.65 0.69 20.95 16 11 O -0.63 -34.34 15.78 -3.07 -0.05 -34.39 16 12 C 0.07 2.09 6.01 85.55 0.51 2.61 16 13 N -0.67 -19.50 6.24 -492.85 -3.08 -22.58 16 14 C 0.07 1.34 4.05 45.44 0.18 1.53 16 15 H 0.11 1.77 7.87 -2.39 -0.02 1.75 16 16 C -0.18 -3.39 7.50 31.12 0.23 -3.16 16 17 C 0.13 2.20 4.32 45.52 0.20 2.40 16 18 H 0.09 1.88 7.46 -2.39 -0.02 1.87 16 19 N -0.70 -9.52 5.01 -440.03 -2.21 -11.73 16 20 C 0.52 9.39 7.14 87.66 0.63 10.01 16 21 O -0.58 -16.19 14.92 -3.04 -0.05 -16.23 16 22 C -0.10 -1.18 2.20 -11.98 -0.03 -1.20 16 23 H 0.12 0.95 7.09 -2.39 -0.02 0.93 16 24 C -0.11 -1.68 4.81 30.27 0.15 -1.54 16 25 C -0.14 -1.63 6.27 31.60 0.20 -1.43 16 26 C 0.05 0.50 6.09 72.44 0.44 0.95 16 27 O -0.39 -5.06 10.35 -140.35 -1.45 -6.52 16 28 C 0.05 0.40 6.11 69.83 0.43 0.83 16 29 C -0.14 -1.18 4.90 28.87 0.14 -1.04 16 30 C -0.12 -2.10 7.63 31.12 0.24 -1.86 16 31 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.40 18.85 7.90 -92.71 -0.73 18.11 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.11 3.00 8.13 -2.39 -0.02 2.98 16 35 H 0.35 10.92 7.90 -89.70 -0.71 10.21 16 36 H 0.09 1.80 7.83 -2.39 -0.02 1.78 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.42 3.10 8.07 -92.71 -0.75 2.36 16 39 H 0.06 1.18 6.72 -2.39 -0.02 1.17 16 40 H 0.05 0.98 7.34 -2.39 -0.02 0.96 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.40 6.54 -2.39 -0.02 0.39 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.28 7.35 -2.38 -0.02 0.26 16 47 H 0.06 0.79 7.53 -2.39 -0.02 0.77 16 48 H 0.10 0.46 7.19 -2.39 -0.02 0.45 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.58 397.06 -2.07 -76.64 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -1.21 Total: 38.57 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.28 Total: 10.79 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -6.62 Total: -113.47 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -1.55 Total: -57.14 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.58 -2.07 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265476027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.450 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds