Wall clock time and date at job start Sat Apr 11 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47073 * 270.00280 * 3 2 1 5 5 H 1.48501 * 109.47297 * 29.99742 * 3 2 1 6 6 H 1.48496 * 109.47417 * 150.00009 * 3 2 1 7 7 C 1.38952 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 0.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 H 1.08994 * 112.85005 * 25.33222 * 14 13 12 16 16 C 1.53780 * 113.61092 * 156.53119 * 14 13 12 17 17 C 1.53786 * 87.07902 * 139.98050 * 16 14 13 18 18 H 1.09001 * 113.61355 * 89.19969 * 17 16 14 19 19 N 1.46500 * 113.61042 * 220.01401 * 17 16 14 20 20 C 1.34777 * 119.99906 * 204.99649 * 19 17 16 21 21 O 1.21289 * 119.99947 * 0.02562 * 20 19 17 22 22 C 1.50702 * 120.00224 * 180.02562 * 20 19 17 23 23 C 1.52994 * 109.47334 * 180.02562 * 22 20 19 24 24 H 1.09000 * 109.48366 * 54.97507 * 23 22 20 25 25 C 1.53083 * 109.48202 * 175.00109 * 23 22 20 26 26 C 1.53181 * 109.16574 * 177.58999 * 25 23 22 27 27 C 1.53177 * 109.03596 * 303.01990 * 26 25 23 28 28 C 1.53088 * 109.16254 * 56.98015 * 27 26 25 29 29 O 1.42905 * 109.47980 * 294.94433 * 23 22 20 30 30 C 1.53785 * 113.61347 * 254.13526 * 14 13 12 31 31 H 0.96997 * 120.00406 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 33 33 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 34 34 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 35 35 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 36 36 H 1.09004 * 113.61334 * 254.52449 * 16 14 13 37 37 H 1.08999 * 113.61516 * 25.43259 * 16 14 13 38 38 H 0.96995 * 120.00027 * 25.00831 * 19 17 16 39 39 H 1.08998 * 109.46935 * 300.00350 * 22 20 19 40 40 H 1.08998 * 109.46611 * 60.00154 * 22 20 19 41 41 H 1.08997 * 109.52330 * 297.49403 * 25 23 22 42 42 H 1.09005 * 109.52373 * 57.62364 * 25 23 22 43 43 H 1.09008 * 109.54189 * 62.88690 * 26 25 23 44 44 H 1.09002 * 109.54317 * 183.06144 * 26 25 23 45 45 H 1.08998 * 109.52268 * 176.88281 * 27 26 25 46 46 H 1.09006 * 109.52277 * 297.07318 * 27 26 25 47 47 H 1.08994 * 109.48555 * 62.37517 * 28 27 26 48 48 H 1.09008 * 109.48256 * 182.40036 * 28 27 26 49 49 H 1.09000 * 113.61582 * 334.56945 * 30 14 13 50 50 H 1.09007 * 113.61203 * 105.47042 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5608 -2.3704 0.0000 13 7 6.0504 -3.7554 0.0006 14 6 7.5190 -3.7946 0.0000 15 1 7.9664 -2.8981 0.4291 16 6 8.1005 -5.1027 0.5617 17 6 9.1488 -5.0266 -0.5609 18 1 10.0435 -4.4681 -0.2857 19 7 9.4528 -6.3244 -1.1688 20 6 10.6428 -6.5253 -1.7688 21 8 11.4622 -5.6318 -1.8050 22 6 10.9553 -7.8601 -2.3947 23 6 12.3593 -7.8227 -3.0015 24 1 13.0772 -7.5213 -2.2386 25 6 12.7258 -9.2131 -3.5266 26 6 14.1071 -9.1537 -4.1860 27 6 14.0852 -8.0998 -5.2974 28 6 13.6662 -6.7523 -4.7039 29 8 12.3876 -6.8851 -4.0796 30 6 8.1239 -4.1968 -1.3554 31 1 -0.4850 0.8400 0.0004 32 1 3.8648 -0.3633 -0.0004 33 1 5.9241 -1.8566 0.8899 34 1 5.9240 -1.8566 -0.8901 35 1 5.6750 -4.2714 0.7822 36 1 8.5229 -4.9990 1.5612 37 1 7.4260 -5.9542 0.4723 38 1 8.7975 -7.0390 -1.1397 39 1 10.9098 -8.6382 -1.6327 40 1 10.2267 -8.0742 -3.1766 41 1 12.7479 -9.9212 -2.6982 42 1 11.9848 -9.5328 -4.2593 43 1 14.8554 -8.8827 -3.4412 44 1 14.3509 -10.1278 -4.6101 45 1 15.0794 -8.0116 -5.7354 46 1 13.3722 -8.3965 -6.0668 47 1 14.4012 -6.4368 -3.9635 48 1 13.6076 -6.0077 -5.4980 49 1 7.4559 -4.8003 -1.9699 50 1 8.5651 -3.3628 -1.9014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265534911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:14 Heat of formation + Delta-G solvation = -104.721729 kcal Electronic energy + Delta-G solvation = -28567.801805 eV Core-core repulsion = 24402.184039 eV Total energy + Delta-G solvation = -4165.617766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48709 -39.62229 -38.62792 -38.02215 -34.63838 -33.97919 -33.87148 -33.29639 -32.42721 -31.62700 -28.80827 -27.01369 -25.81593 -24.97544 -24.22874 -23.36519 -22.19537 -20.65511 -20.62691 -19.83229 -19.29931 -18.29484 -17.18175 -16.87406 -16.83243 -16.27228 -15.85150 -15.41623 -15.39017 -15.02317 -14.95971 -14.86508 -14.68719 -14.34335 -13.90752 -13.60171 -13.31653 -13.16105 -13.02382 -12.77856 -12.71403 -12.52466 -12.44556 -12.13967 -12.01054 -11.86136 -11.65813 -11.49835 -11.32917 -11.19081 -11.11629 -10.98850 -10.69758 -10.64223 -10.58253 -9.97358 -9.93900 -9.69268 -9.56543 -9.14228 -8.56763 -8.19340 -8.13990 -6.30506 -3.81872 2.49240 2.95978 3.03409 3.08140 3.15995 3.44252 3.75152 4.10518 4.16377 4.26269 4.31130 4.39714 4.40869 4.44693 4.50221 4.66421 4.77360 4.78883 4.84382 4.87908 5.00530 5.02847 5.06061 5.22231 5.23597 5.26413 5.35959 5.40012 5.45700 5.49850 5.54663 5.59672 5.64643 5.67771 5.69244 5.77850 5.85359 5.91250 5.92599 6.00790 6.11665 6.44264 6.96559 7.15570 7.34753 7.57737 7.59621 8.08884 8.15203 8.60572 8.95620 9.43284 9.83592 10.82632 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.001523 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.273562 B =18381.339610 C =18693.524666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.566 6.566 12 C 0.047 3.953 13 N -0.654 5.654 14 C 0.061 3.939 15 H 0.074 0.926 16 C -0.147 4.147 17 C 0.123 3.877 18 H 0.112 0.888 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.531 6.531 22 C -0.137 4.137 23 C 0.107 3.893 24 H 0.065 0.935 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.158 4.158 28 C 0.064 3.936 29 O -0.366 6.366 30 C -0.137 4.137 31 H 0.273 0.727 32 H 0.371 0.629 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.352 0.648 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.048 -16.498 -4.701 34.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.448 6.448 12 C -0.086 4.086 13 N -0.287 5.287 14 C -0.050 4.050 15 H 0.092 0.908 16 C -0.186 4.186 17 C 0.017 3.983 18 H 0.130 0.870 19 N -0.372 5.372 20 C 0.301 3.699 21 O -0.407 6.407 22 C -0.177 4.177 23 C 0.048 3.952 24 H 0.083 0.917 25 C -0.190 4.190 26 C -0.160 4.160 27 C -0.196 4.196 28 C -0.013 4.013 29 O -0.285 6.285 30 C -0.176 4.176 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.172 0.828 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.236 0.764 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 29.797 -16.404 -5.453 34.449 hybrid contribution 0.583 1.230 0.936 1.652 sum 30.380 -15.174 -4.517 34.258 Atomic orbital electron populations 1.69619 1.05645 1.27492 1.49400 1.25035 0.95488 0.97970 0.97632 0.86669 0.79740 0.84025 0.78931 1.19585 1.20195 1.19532 1.19436 0.79272 0.96632 1.48081 0.86292 1.42211 1.07533 1.06191 1.67083 1.19732 0.88231 0.84543 0.83918 1.90559 1.69477 1.30948 1.53785 1.21774 0.94918 0.90639 1.01277 1.60196 1.04922 1.12674 1.50875 1.22811 0.88414 0.96583 0.97185 0.90845 1.23602 0.97796 0.98979 0.98224 1.22365 0.97171 0.84659 0.94056 0.86974 1.45986 1.17512 1.15437 1.58229 1.20529 0.81642 0.89888 0.77810 1.90713 1.47518 1.44763 1.57661 1.21759 0.98353 0.96114 1.01497 1.21734 0.95687 0.88384 0.89348 0.91737 1.22243 0.97961 0.97428 1.01360 1.21570 0.96935 0.99396 0.98050 1.22223 1.02203 0.96397 0.98758 1.22511 0.85710 0.96331 0.96789 1.87993 1.30848 1.61510 1.48149 1.23599 0.97019 0.99885 0.97130 0.91622 0.79676 0.93702 0.89450 0.82790 0.90866 0.88640 0.76443 0.87562 0.87903 0.90782 0.90827 0.91804 0.91425 0.90981 0.91051 0.93259 0.88981 0.88716 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.85 13.96 55.50 0.77 -25.07 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 7 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 9 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 10 C 0.45 10.23 7.82 -10.98 -0.09 10.15 16 11 O -0.57 -15.17 15.78 5.55 0.09 -15.08 16 12 C 0.05 0.77 6.02 -4.97 -0.03 0.74 16 13 N -0.65 -9.82 6.18 -107.12 -0.66 -10.48 16 14 C 0.06 0.70 4.12 -66.90 -0.28 0.42 16 15 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 16 C -0.15 -1.33 7.42 -25.92 -0.19 -1.53 16 17 C 0.12 1.21 4.24 -67.03 -0.28 0.92 16 18 H 0.11 1.23 7.46 -51.93 -0.39 0.84 16 19 N -0.72 -6.19 5.36 -52.93 -0.28 -6.48 16 20 C 0.52 5.26 7.71 -10.98 -0.08 5.17 16 21 O -0.53 -7.62 15.02 -8.81 -0.13 -7.75 16 22 C -0.14 -0.93 5.41 -27.89 -0.15 -1.08 16 23 C 0.11 0.86 2.19 -26.69 -0.06 0.80 16 24 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 25 C -0.15 -0.85 5.42 -26.59 -0.14 -0.99 16 26 C -0.12 -0.65 6.03 -26.55 -0.16 -0.81 16 27 C -0.16 -0.93 6.14 -26.59 -0.16 -1.09 16 28 C 0.06 0.50 6.84 37.20 0.25 0.76 16 29 O -0.37 -3.87 9.64 -49.60 -0.48 -4.35 16 30 C -0.14 -1.55 7.69 -25.83 -0.20 -1.75 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 33 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.35 5.39 8.26 -39.29 -0.32 5.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.40 2.46 8.73 -40.82 -0.36 2.11 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -35.82 404.19 -9.64 -45.46 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.44 Total: 13.18 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.82 Total: 3.91 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.23 Total: -56.24 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.52 Total: -27.18 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.82 -9.64 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265534911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.266 kcal (2) G-P(sol) polarization free energy of solvation -35.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds