Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99762 * 2 1 4 4 H 1.48494 * 109.47026 * 270.00018 * 3 2 1 5 5 H 1.48497 * 109.46829 * 30.00404 * 3 2 1 6 6 H 1.48508 * 109.46758 * 150.00101 * 3 2 1 7 7 C 1.38951 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00262 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99676 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99641 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00080 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99871 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47217 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99948 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47132 * 180.02562 * 14 13 12 16 16 H 1.09004 * 110.91182 * 302.55360 * 15 14 13 17 17 C 1.55160 * 111.00610 * 66.45239 * 15 14 13 18 18 C 1.54325 * 103.10318 * 153.66670 * 17 15 14 19 19 N 1.47030 * 107.27017 * 337.72256 * 18 17 15 20 20 C 1.34773 * 125.64967 * 178.97552 * 19 18 17 21 21 O 1.21286 * 119.99513 * 354.96097 * 20 19 18 22 22 C 1.50692 * 120.00016 * 174.95593 * 20 19 18 23 23 C 1.53181 * 109.54419 * 266.80553 * 22 20 19 24 24 C 1.53093 * 109.16501 * 183.15531 * 23 22 20 25 25 O 1.42905 * 109.41462 * 57.60819 * 24 23 22 26 26 C 1.42903 * 114.09933 * 298.84708 * 25 24 23 27 27 C 1.53093 * 109.41579 * 61.15613 * 26 25 24 28 28 C 1.47423 * 108.70308 * 358.93898 * 19 18 17 29 29 H 0.96999 * 119.99886 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00355 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47509 * 59.99444 * 12 10 9 32 32 H 1.09004 * 109.46978 * 299.99202 * 12 10 9 33 33 H 1.00900 * 110.99717 * 56.04652 * 13 12 10 34 34 H 1.08998 * 109.47398 * 60.00674 * 14 13 12 35 35 H 1.09003 * 109.47449 * 299.99939 * 14 13 12 36 36 H 1.08996 * 110.71765 * 35.21482 * 17 15 14 37 37 H 1.08993 * 110.71858 * 272.12032 * 17 15 14 38 38 H 1.08999 * 109.88121 * 97.13253 * 18 17 15 39 39 H 1.08991 * 109.88339 * 218.14865 * 18 17 15 40 40 H 1.08993 * 109.54833 * 27.07323 * 22 20 19 41 41 H 1.08999 * 109.52645 * 303.06472 * 23 22 20 42 42 H 1.08999 * 109.52307 * 63.24912 * 23 22 20 43 43 H 1.09004 * 109.48072 * 297.62763 * 24 23 22 44 44 H 1.08995 * 109.49144 * 177.60112 * 24 23 22 45 45 H 1.09007 * 109.47780 * 301.17261 * 26 25 24 46 46 H 1.09004 * 109.48949 * 181.14805 * 26 25 24 47 47 H 1.08996 * 109.51794 * 182.48758 * 27 26 25 48 48 H 1.08993 * 109.52297 * 62.29767 * 27 26 25 49 49 H 1.08997 * 110.37016 * 142.96932 * 28 19 18 50 50 H 1.09001 * 110.36699 * 265.18303 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0009 12 6 5.5608 -2.3705 0.0000 13 7 6.0505 -3.7554 0.0006 14 6 7.5189 -3.7945 0.0000 15 6 7.9904 -5.2501 0.0001 16 1 7.5893 -5.7890 0.8586 17 6 7.6106 -5.9578 -1.3275 18 6 8.6776 -7.0659 -1.4509 19 7 9.8307 -6.6542 -0.6370 20 6 10.9649 -7.3621 -0.4667 21 8 11.0597 -8.4770 -0.9347 22 6 12.1150 -6.7683 0.3049 23 6 13.0793 -6.0768 -0.6639 24 6 14.2830 -5.5455 0.1188 25 8 14.9151 -6.6256 0.8089 26 6 14.0755 -7.2797 1.7624 27 6 12.8635 -7.8806 1.0457 28 6 9.5412 -5.3383 -0.0386 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0004 31 1 5.9242 -1.8565 0.8899 32 1 5.9241 -1.8567 -0.8901 33 1 5.6750 -4.2720 -0.7805 34 1 7.8962 -3.2902 0.8896 35 1 7.8955 -3.2911 -0.8904 36 1 7.6757 -5.2647 -2.1662 37 1 6.6120 -6.3895 -1.2625 38 1 8.2779 -8.0086 -1.0772 39 1 8.9773 -7.1776 -2.4929 40 1 11.7357 -6.0424 1.0240 41 1 13.4188 -6.7923 -1.4128 42 1 12.5698 -5.2479 -1.1554 43 1 13.9475 -4.8002 0.8399 44 1 14.9931 -5.0898 -0.5712 45 1 13.7373 -6.5570 2.5051 46 1 14.6361 -8.0734 2.2565 47 1 12.1997 -8.3418 1.7770 48 1 13.1986 -8.6326 0.3314 49 1 9.9492 -5.2824 0.9706 50 1 9.9525 -4.5412 -0.6579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265951738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -146.532192 kcal Electronic energy + Delta-G solvation = -29147.349498 eV Core-core repulsion = 24979.918695 eV Total energy + Delta-G solvation = -4167.430804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58441 -40.31796 -39.89792 -38.77811 -36.60520 -35.83004 -34.79796 -33.74065 -32.79912 -32.07400 -30.74116 -28.71657 -27.07309 -26.33789 -24.56993 -24.44166 -23.89850 -21.75661 -21.28539 -21.09487 -20.24307 -20.09198 -18.37506 -18.02080 -17.51755 -17.16039 -17.02728 -16.71216 -16.58217 -16.35088 -15.76065 -15.72262 -15.44813 -15.09342 -15.00871 -14.77646 -14.66246 -14.43689 -14.35310 -14.22930 -13.88889 -13.63715 -13.36167 -13.31728 -13.27248 -12.99356 -12.70640 -12.52506 -12.39753 -12.31347 -12.10783 -11.95774 -11.74316 -11.70555 -11.63603 -11.49130 -11.46109 -10.98134 -10.45639 -10.41043 -10.23272 -9.75392 -9.26411 -8.39791 -6.00933 1.31826 1.37553 1.46734 1.47512 1.86815 1.98832 2.24924 2.74397 2.97281 3.17035 3.30715 3.35179 3.61639 3.66254 3.71620 3.78370 3.96074 3.99625 4.14075 4.20256 4.23614 4.28785 4.34685 4.43520 4.47514 4.49317 4.55304 4.60446 4.61067 4.64114 4.75528 4.77340 4.79582 4.82051 4.89512 4.93560 5.04112 5.06231 5.09492 5.19816 5.28868 5.35800 5.54386 5.92931 6.09637 6.26868 6.41112 6.45378 6.61685 6.90213 7.03936 7.42153 7.99421 8.77900 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023271 B = 0.001718 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.919353 B =16294.278305 C =17071.505547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.228 1.228 7 C -0.329 4.329 8 H 0.053 0.947 9 N -0.591 5.591 10 C 0.446 3.554 11 O -0.617 6.617 12 C 0.063 3.937 13 N -0.691 5.691 14 C 0.075 3.925 15 C -0.092 4.092 16 H 0.082 0.918 17 C -0.126 4.126 18 C 0.106 3.894 19 N -0.617 5.617 20 C 0.527 3.473 21 O -0.589 6.589 22 C -0.099 4.099 23 C -0.138 4.138 24 C 0.062 3.938 25 O -0.406 6.406 26 C 0.064 3.936 27 C -0.141 4.141 28 C 0.106 3.894 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.344 0.656 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.101 0.899 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.946 -4.020 1.346 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.151 1.151 7 C -0.459 4.459 8 H 0.071 0.929 9 N -0.233 5.233 10 C 0.234 3.766 11 O -0.501 6.501 12 C -0.069 4.069 13 N -0.324 5.324 14 C -0.054 4.054 15 C -0.111 4.111 16 H 0.100 0.900 17 C -0.164 4.164 18 C -0.017 4.017 19 N -0.349 5.349 20 C 0.317 3.683 21 O -0.470 6.470 22 C -0.120 4.120 23 C -0.177 4.177 24 C -0.015 4.015 25 O -0.325 6.325 26 C -0.013 4.013 27 C -0.179 4.179 28 C -0.016 4.016 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.073 0.927 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.075 0.925 49 H 0.119 0.881 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 32.603 -5.373 1.755 33.090 hybrid contribution -0.963 0.590 -1.126 1.594 sum 31.641 -4.783 0.629 32.006 Atomic orbital electron populations 1.69815 1.08241 1.29232 1.50380 1.26162 0.96487 1.02863 0.96080 0.85340 0.79575 0.76508 0.79925 1.18141 1.20268 1.15087 1.19004 0.81679 0.94840 1.50339 0.92860 1.42036 1.05707 1.07720 1.67848 1.21134 0.91312 0.83204 0.80959 1.90550 1.71542 1.32885 1.55125 1.21629 0.89060 0.91957 1.04246 1.60024 1.08651 1.11940 1.51746 1.21922 0.85881 0.94987 1.02578 1.22363 0.94246 0.96396 0.98127 0.89975 1.22701 0.98093 0.97083 0.98528 1.21915 0.86247 0.98311 0.95230 1.48641 1.15727 1.21482 1.49073 1.20872 0.83034 0.84361 0.79986 1.90686 1.82394 1.21339 1.52537 1.21401 0.92902 0.99395 0.98329 1.22109 0.96625 1.01018 0.97908 1.22737 0.94333 0.88564 0.95835 1.87933 1.39834 1.48951 1.55792 1.22688 0.90861 0.97360 0.90354 1.22080 0.98181 0.97523 1.00107 1.22637 0.94907 0.83901 1.00173 0.91205 0.77389 0.86529 0.90226 0.83770 0.88814 0.92909 0.89463 0.90300 0.92945 0.91885 0.86157 0.92680 0.88561 0.90553 0.87358 0.90792 0.87766 0.90283 0.92469 0.88114 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.89 13.96 21.66 0.30 -55.59 16 2 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 3 Si 0.97 37.49 27.74 68.60 1.90 39.39 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 7 C -0.33 -18.96 10.16 84.04 0.85 -18.10 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -26.75 5.09 -306.98 -1.56 -28.31 16 10 C 0.45 19.08 7.82 87.66 0.69 19.76 16 11 O -0.62 -33.17 15.78 -3.06 -0.05 -33.22 16 12 C 0.06 1.67 6.17 85.56 0.53 2.20 16 13 N -0.69 -16.98 6.13 -517.93 -3.17 -20.16 16 14 C 0.08 1.04 5.21 86.31 0.45 1.49 16 15 C -0.09 -1.23 3.31 -9.23 -0.03 -1.26 16 16 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 17 C -0.13 -1.93 5.61 31.78 0.18 -1.75 16 18 C 0.11 1.93 6.87 86.73 0.60 2.52 16 19 N -0.62 -10.15 3.33 -810.84 -2.70 -12.84 16 20 C 0.53 10.61 6.87 87.65 0.60 11.21 16 21 O -0.59 -17.57 16.51 -3.05 -0.05 -17.62 16 22 C -0.10 -1.24 2.29 -11.42 -0.03 -1.27 16 23 C -0.14 -1.48 5.40 30.69 0.17 -1.32 16 24 C 0.06 0.53 6.84 72.01 0.49 1.02 16 25 O -0.41 -5.75 10.77 -148.98 -1.60 -7.35 16 26 C 0.06 0.66 6.84 72.01 0.49 1.16 16 27 C -0.14 -1.98 5.11 30.69 0.16 -1.82 16 28 C 0.11 0.99 6.06 87.02 0.53 1.52 16 29 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.39 14.32 5.76 -92.71 -0.53 13.78 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.34 9.34 7.64 -89.69 -0.69 8.65 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.55 8.11 -2.39 -0.02 0.53 16 36 H 0.09 1.16 8.01 -2.39 -0.02 1.14 16 37 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.12 0.81 6.42 -2.39 -0.02 0.80 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 47 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 1.13 7.75 -2.39 -0.02 1.12 16 49 H 0.10 0.55 6.86 -2.39 -0.02 0.54 16 50 H 0.10 0.52 8.05 -2.39 -0.02 0.50 16 Total: -1.00 -84.97 398.37 -1.12 -86.09 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.33 Total: 34.75 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.14 Total: 14.86 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -7.13 Total: -116.90 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -1.70 Total: -58.20 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.90 Total: 39.39 kcal Total: -84.97 -1.12 -86.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265951738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.444 kcal (2) G-P(sol) polarization free energy of solvation -84.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds