Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 120.00055 * 2 1 4 4 H 1.48498 * 109.46885 * 269.99930 * 3 2 1 5 5 H 1.48499 * 109.47194 * 29.99510 * 3 2 1 6 6 H 1.48493 * 109.47006 * 149.99748 * 3 2 1 7 7 C 1.38954 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99514 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99828 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99870 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99841 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47048 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99913 * 180.02562 * 13 12 10 15 15 H 1.08998 * 112.90630 * 336.24254 * 14 13 12 16 16 C 1.53778 * 113.61883 * 107.50322 * 14 13 12 17 17 C 1.53778 * 87.08449 * 139.97809 * 16 14 13 18 18 H 1.08993 * 113.61229 * 220.02023 * 17 16 14 19 19 N 1.46501 * 113.61560 * 89.11214 * 17 16 14 20 20 C 1.34781 * 119.99552 * 107.49938 * 19 17 16 21 21 O 1.21273 * 120.00172 * 0.02562 * 20 19 17 22 22 C 1.50702 * 119.99750 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.47072 * 180.02562 * 22 20 19 24 24 H 1.09004 * 109.52033 * 54.87717 * 23 22 20 25 25 C 1.53179 * 109.52234 * 175.00119 * 23 22 20 26 26 C 1.53171 * 109.03517 * 176.88735 * 25 23 22 27 27 C 1.53084 * 109.16416 * 303.01913 * 26 25 23 28 28 O 1.42904 * 109.41580 * 57.61009 * 27 26 25 29 29 C 1.42902 * 114.09741 * 298.84012 * 28 27 26 30 30 C 1.53784 * 87.08081 * 334.56700 * 17 16 14 31 31 H 0.96998 * 120.00093 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00117 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47110 * 60.00355 * 12 10 9 34 34 H 1.09001 * 109.47549 * 300.00562 * 12 10 9 35 35 H 1.00905 * 110.99615 * 303.95248 * 13 12 10 36 36 H 1.08999 * 113.61111 * 254.52872 * 16 14 13 37 37 H 1.09004 * 113.61682 * 25.42269 * 16 14 13 38 38 H 0.96998 * 120.00259 * 287.50678 * 19 17 16 39 39 H 1.09000 * 109.47285 * 300.00722 * 22 20 19 40 40 H 1.08993 * 109.46779 * 60.00471 * 22 20 19 41 41 H 1.09004 * 109.54174 * 296.75598 * 25 23 22 42 42 H 1.09001 * 109.54315 * 57.01830 * 25 23 22 43 43 H 1.08998 * 109.52184 * 62.92545 * 26 25 23 44 44 H 1.08999 * 109.52326 * 183.11491 * 26 25 23 45 45 H 1.09010 * 109.48461 * 177.59074 * 27 26 25 46 46 H 1.09002 * 109.48266 * 297.61422 * 27 26 25 47 47 H 1.08996 * 109.48286 * 301.17763 * 29 28 27 48 48 H 1.08998 * 109.47869 * 181.13939 * 29 28 27 49 49 H 1.09004 * 113.61451 * 270.88641 * 30 17 16 50 50 H 1.08994 * 113.61477 * 139.97943 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 1.4981 -7.2708 0.0016 15 1 0.4880 -7.2056 0.4057 16 6 1.5774 -8.0147 -1.3420 17 6 1.7628 -9.3054 -0.5270 18 1 2.4960 -9.9897 -0.9537 19 7 0.5022 -9.9654 -0.1780 20 6 0.1479 -11.1103 -0.7946 21 8 0.8727 -11.5944 -1.6378 22 6 -1.1485 -11.7895 -0.4352 23 6 -1.3085 -13.0593 -1.2737 24 1 -0.4326 -13.6948 -1.1429 25 6 -2.5618 -13.8159 -0.8228 26 6 -2.7545 -15.0426 -1.7196 27 6 -2.8431 -14.5892 -3.1791 28 8 -1.6601 -13.8657 -3.5245 29 6 -1.4530 -12.6824 -2.7504 30 6 2.3269 -8.4210 0.5976 31 1 -0.4850 0.8400 -0.0004 32 1 0.3535 -2.3907 0.0005 33 1 0.6169 -4.9209 -0.8886 34 1 0.6174 -4.9205 0.8913 35 1 2.8333 -5.9128 -0.7798 36 1 0.6484 -7.9875 -1.9115 37 1 2.4490 -7.7462 -1.9390 38 1 -0.0774 -9.5783 0.4966 39 1 -1.1404 -12.0516 0.6227 40 1 -1.9802 -11.1141 -0.6358 41 1 -2.4419 -14.1360 0.2122 42 1 -3.4311 -13.1634 -0.9056 43 1 -1.9080 -15.7185 -1.5990 44 1 -3.6746 -15.5563 -1.4413 45 1 -2.9374 -15.4616 -3.8258 46 1 -3.7135 -13.9457 -3.3077 47 1 -2.3050 -12.0139 -2.8732 48 1 -0.5458 -12.1813 -3.0881 49 1 3.4035 -8.2636 0.5309 50 1 2.0030 -8.7220 1.5938 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266638581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = -110.968358 kcal Electronic energy + Delta-G solvation = -28667.371115 eV Core-core repulsion = 24501.482475 eV Total energy + Delta-G solvation = -4165.888640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74678 -39.71969 -38.66343 -37.97346 -34.82371 -34.59424 -33.84906 -32.66136 -32.24421 -31.20381 -28.20469 -26.76633 -25.81474 -25.38538 -24.48874 -23.45161 -22.63777 -21.03339 -20.40436 -19.77448 -19.12149 -17.89699 -17.44267 -16.73304 -16.49814 -16.31307 -16.06801 -15.57281 -15.42001 -14.99816 -14.89686 -14.58765 -14.57960 -14.50580 -14.08567 -13.79846 -13.31292 -13.14714 -13.03865 -12.93617 -12.81273 -12.60374 -12.31884 -12.08688 -11.84240 -11.64013 -11.60222 -11.44108 -11.42473 -11.24424 -11.07295 -10.85989 -10.68177 -10.49432 -10.40293 -10.22642 -10.01169 -9.79155 -9.52467 -9.29575 -8.46871 -8.04314 -7.96825 -6.43318 -3.84137 2.30972 2.80448 3.16897 3.25675 3.31767 3.57636 3.89100 4.08447 4.18611 4.26758 4.28966 4.33390 4.40454 4.48679 4.54862 4.58207 4.74464 4.79585 4.92293 4.95236 5.00943 5.07997 5.11641 5.15035 5.20663 5.25414 5.36737 5.44413 5.45844 5.53334 5.59336 5.63038 5.68010 5.73739 5.76995 5.83027 5.86415 5.91608 5.96146 5.99557 6.23650 6.37496 6.89628 7.18616 7.23468 7.53827 7.63446 7.92735 8.04875 8.59601 9.16400 9.52625 10.04049 10.74392 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024489 B = 0.001534 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.079999 B =18249.979766 C =18797.835687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.068 3.932 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.118 3.882 18 H 0.104 0.896 19 N -0.712 5.712 20 C 0.513 3.487 21 O -0.534 6.534 22 C -0.137 4.137 23 C -0.107 4.107 24 H 0.089 0.911 25 C -0.119 4.119 26 C -0.156 4.156 27 C 0.056 3.944 28 O -0.379 6.379 29 C 0.061 3.939 30 C -0.132 4.132 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.353 0.647 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.112 0.888 49 H 0.101 0.899 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 -28.044 -0.408 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.288 5.288 14 C -0.043 4.043 15 H 0.111 0.889 16 C -0.221 4.221 17 C 0.012 3.988 18 H 0.122 0.878 19 N -0.363 5.363 20 C 0.299 3.701 21 O -0.411 6.411 22 C -0.177 4.177 23 C -0.126 4.126 24 H 0.107 0.893 25 C -0.156 4.156 26 C -0.193 4.193 27 C -0.021 4.021 28 O -0.298 6.298 29 C -0.015 4.015 30 C -0.171 4.171 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.173 0.827 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.428 -28.242 -0.475 29.477 hybrid contribution -1.187 1.236 -0.225 1.728 sum -9.614 -27.007 -0.700 28.676 Atomic orbital electron populations 1.69609 1.05947 1.28162 1.50627 1.25263 0.95635 0.99732 0.97291 0.85851 0.79260 0.80766 0.78382 1.20421 1.20921 1.19386 1.19716 0.93398 0.82249 1.47593 0.87904 1.41868 1.09179 1.04625 1.64358 1.19834 0.88408 0.84755 0.84500 1.90524 1.13770 1.87072 1.55393 1.21711 0.94444 0.91065 1.01029 1.60030 1.18227 0.99485 1.51039 1.23097 0.97254 0.88985 0.94992 0.88908 1.24195 1.02989 0.96810 0.98089 1.21772 0.86224 0.93414 0.97392 0.87830 1.45753 1.22859 1.25158 1.42532 1.20710 0.87851 0.80360 0.81146 1.90700 1.53648 1.64489 1.32269 1.21708 0.95833 0.97843 1.02305 1.21562 0.99414 0.95817 0.95822 0.89306 1.21667 0.97450 0.96876 0.99653 1.22177 1.02825 0.98298 0.96026 1.22593 0.87926 0.96260 0.95316 1.87994 1.43511 1.38690 1.59578 1.22861 1.02239 0.86604 0.89812 1.23465 1.01826 0.94198 0.97639 0.91879 0.77488 0.93867 0.89707 0.82663 0.91299 0.88803 0.76436 0.88359 0.88633 0.91255 0.91647 0.90940 0.90842 0.89040 0.93343 0.93832 0.87027 0.88077 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 11 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 12 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 13 N -0.66 -10.08 6.24 -107.13 -0.67 -10.75 16 14 C 0.07 0.75 4.06 -66.90 -0.27 0.48 16 15 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 16 C -0.18 -1.85 7.49 -25.92 -0.19 -2.04 16 17 C 0.12 1.10 4.32 -67.12 -0.29 0.81 16 18 H 0.10 1.12 7.47 -51.93 -0.39 0.73 16 19 N -0.71 -5.43 5.26 -53.02 -0.28 -5.71 16 20 C 0.51 4.54 7.56 -10.98 -0.08 4.46 16 21 O -0.53 -6.83 13.59 5.56 0.08 -6.75 16 22 C -0.14 -0.77 5.18 -27.88 -0.14 -0.91 16 23 C -0.11 -0.77 2.03 -90.48 -0.18 -0.95 16 24 H 0.09 0.81 7.95 -51.93 -0.41 0.39 16 25 C -0.12 -0.63 5.31 -26.55 -0.14 -0.77 16 26 C -0.16 -0.87 6.14 -26.60 -0.16 -1.03 16 27 C 0.06 0.38 6.84 37.20 0.25 0.64 16 28 O -0.38 -3.92 10.77 -35.23 -0.38 -4.30 16 29 C 0.06 0.56 5.84 37.20 0.22 0.78 16 30 C -0.13 -1.27 7.63 -25.91 -0.20 -1.47 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.35 5.68 7.89 -39.29 -0.31 5.37 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.00 7.82 -51.93 -0.41 0.59 16 38 H 0.40 2.10 8.70 -40.82 -0.36 1.75 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.11 1.26 6.04 -51.93 -0.31 0.94 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -33.74 403.36 -9.34 -43.08 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.35 Total: 13.01 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.55 Total: 3.00 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.28 Total: -54.37 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.22 Total: -26.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.74 -9.34 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266638581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.884 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds