Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46901 * 110.99844 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46977 * 179.97438 * 14 13 12 16 16 H 1.09007 * 109.47170 * 65.00434 * 15 14 13 17 17 N 1.46498 * 109.47553 * 305.00107 * 15 14 13 18 18 C 1.34773 * 120.00175 * 154.99538 * 17 15 14 19 19 O 1.21280 * 120.00396 * 0.02562 * 18 17 15 20 20 C 1.50699 * 120.00033 * 180.02562 * 18 17 15 21 21 H 1.08993 * 109.48221 * 54.97887 * 20 18 17 22 22 C 1.53093 * 109.47942 * 294.94372 * 20 18 17 23 23 C 1.53176 * 109.16254 * 182.40830 * 22 20 18 24 24 C 1.53180 * 109.03711 * 56.98354 * 23 22 20 25 25 C 1.53095 * 109.16257 * 303.01775 * 24 23 22 26 26 O 1.42904 * 109.41365 * 57.60991 * 25 24 23 27 27 C 1.52998 * 109.47404 * 184.99825 * 15 14 13 28 28 C 1.53000 * 117.50270 * 248.75447 * 27 15 14 29 29 C 1.52999 * 117.50372 * 180.08786 * 27 15 14 30 30 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 33 33 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 34 34 H 1.00895 * 110.99935 * 56.04274 * 13 12 10 35 35 H 1.08997 * 109.46919 * 300.00265 * 14 13 12 36 36 H 1.09005 * 109.46998 * 59.99725 * 14 13 12 37 37 H 0.97002 * 120.00235 * 335.00441 * 17 15 14 38 38 H 1.08999 * 109.52482 * 302.31464 * 22 20 18 39 39 H 1.08992 * 109.52389 * 62.50586 * 22 20 18 40 40 H 1.08997 * 109.54831 * 297.11406 * 23 22 20 41 41 H 1.09008 * 109.61821 * 176.88993 * 23 22 20 42 42 H 1.09002 * 109.52428 * 183.11324 * 24 23 22 43 43 H 1.09003 * 109.52222 * 62.92580 * 24 23 22 44 44 H 1.09003 * 109.48097 * 297.62754 * 25 24 23 45 45 H 1.08995 * 109.48206 * 177.59361 * 25 24 23 46 46 H 1.09007 * 115.54815 * 34.41911 * 27 15 14 47 47 H 1.09002 * 117.49730 * 359.97438 * 28 27 15 48 48 H 1.09003 * 117.50051 * 145.02154 * 28 27 15 49 49 H 1.08997 * 117.49995 * 214.98405 * 29 27 15 50 50 H 1.09002 * 117.49465 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1985 -5.9795 -0.0089 14 6 1.4982 -7.2708 -0.0144 15 6 2.5231 -8.4067 -0.0193 16 1 3.0889 -8.3896 0.9123 17 7 3.4385 -8.2338 -1.1499 18 6 4.6775 -8.7619 -1.1007 19 8 5.0346 -9.3807 -0.1206 20 6 5.6194 -8.5835 -2.2635 21 1 5.7230 -7.5219 -2.4878 22 6 5.0616 -9.3124 -3.4887 23 6 6.0528 -9.1772 -4.6487 24 6 7.4122 -9.7316 -4.2114 25 6 7.8792 -8.9865 -2.9582 26 8 6.8980 -9.1269 -1.9288 27 6 1.7979 -9.7475 -0.1507 28 6 1.8130 -10.6808 1.0616 29 6 2.6546 -11.0150 -0.1727 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6165 -4.9246 0.8846 33 1 0.6178 -4.9168 -0.8953 34 1 2.8328 -5.9158 0.7732 35 1 0.8729 -7.3489 0.8749 36 1 0.8736 -7.3416 -0.9050 37 1 3.1530 -7.7391 -1.9339 38 1 4.9196 -10.3669 -3.2520 39 1 4.1067 -8.8701 -3.7723 40 1 6.1573 -8.1264 -4.9185 41 1 5.6891 -9.7400 -5.5084 42 1 8.1383 -9.5890 -5.0118 43 1 7.3177 -10.7945 -3.9892 44 1 8.0124 -7.9301 -3.1918 45 1 8.8259 -9.4057 -2.6177 46 1 0.8986 -9.7371 -0.7667 47 1 2.3400 -10.3397 1.9527 48 1 0.9239 -11.2847 1.2429 49 1 2.3188 -11.8385 -0.8028 50 1 3.7349 -10.8936 -0.0931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269062271.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = -99.769457 kcal Electronic energy + Delta-G solvation = -29947.553275 eV Core-core repulsion = 25782.150255 eV Total energy + Delta-G solvation = -4165.403019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51349 -39.09395 -38.26507 -37.23656 -35.59621 -34.18834 -33.88928 -33.46698 -31.71143 -31.23415 -29.37584 -26.53079 -25.58687 -24.20660 -24.06140 -22.46544 -22.16631 -21.14241 -20.54899 -20.29217 -19.26312 -17.93490 -17.51405 -16.97426 -16.20876 -16.09399 -15.93733 -15.62479 -15.16214 -14.89323 -14.72402 -14.59555 -14.44178 -14.34282 -14.06212 -13.56814 -13.38602 -13.22890 -12.99999 -12.89261 -12.84004 -12.07355 -11.90659 -11.79046 -11.57712 -11.52961 -11.51224 -11.40285 -11.39387 -11.30884 -11.05588 -10.72361 -10.43824 -10.41101 -10.29860 -10.22864 -9.76997 -9.53540 -9.52661 -8.94838 -8.50522 -8.12929 -7.98361 -6.43894 -3.84766 2.62200 2.75854 3.16318 3.25179 3.31130 3.66044 3.88227 3.97263 4.01589 4.23363 4.43416 4.49840 4.52119 4.66429 4.68495 4.81174 4.87134 4.90460 4.96883 5.00222 5.14885 5.19890 5.21334 5.27109 5.29218 5.34022 5.42124 5.48643 5.54973 5.59251 5.59954 5.68339 5.72822 5.76197 5.80734 5.87352 5.93073 5.95241 6.06249 6.22643 6.25388 6.49564 6.91252 7.11588 7.53237 7.55313 7.58580 8.04073 8.28449 8.58909 9.15862 9.52000 10.03361 10.73846 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.002520 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.729107 B =11110.378805 C =13027.975346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.052 3.948 15 C 0.182 3.818 16 H 0.088 0.912 17 N -0.700 5.700 18 C 0.527 3.473 19 O -0.526 6.526 20 C 0.074 3.926 21 H 0.087 0.913 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.058 3.942 26 O -0.354 6.354 27 C -0.169 4.169 28 C -0.171 4.171 29 C -0.181 4.181 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.351 0.649 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.405 0.595 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.085 0.915 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -21.391 -7.539 23.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.300 5.300 14 C -0.078 4.078 15 C 0.077 3.923 16 H 0.106 0.894 17 N -0.352 5.352 18 C 0.312 3.688 19 O -0.402 6.402 20 C 0.012 3.988 21 H 0.105 0.895 22 C -0.181 4.181 23 C -0.160 4.160 24 C -0.196 4.196 25 C -0.018 4.018 26 O -0.272 6.272 27 C -0.189 4.189 28 C -0.209 4.209 29 C -0.218 4.218 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.140 -21.720 -7.317 23.489 hybrid contribution -0.917 1.248 0.164 1.557 sum 4.223 -20.472 -7.153 22.094 Atomic orbital electron populations 1.69609 1.05941 1.28179 1.50624 1.25259 0.95633 0.99731 0.97308 0.85861 0.79253 0.80797 0.78408 1.20386 1.20926 1.19402 1.19699 0.93364 0.82232 1.47576 0.87940 1.41865 1.09191 1.04614 1.64367 1.19802 0.88394 0.84712 0.84548 1.90534 1.13730 1.87040 1.55338 1.21677 0.94306 0.90953 1.01259 1.60075 1.18684 0.99644 1.51548 1.22239 0.95156 0.88754 1.01677 1.20478 0.89622 0.91637 0.90571 0.89442 1.45663 1.12957 1.55773 1.20820 1.20004 0.82056 0.78848 0.87893 1.90633 1.75726 1.40405 1.33419 1.21894 0.85178 0.98734 0.92975 0.89532 1.22114 0.99477 1.02076 0.94443 1.21594 0.94852 1.01877 0.97641 1.22218 0.97639 1.01235 0.98466 1.22659 0.91669 0.99641 0.87876 1.88053 1.18734 1.80765 1.39678 1.22647 1.01653 0.91410 1.03163 1.22929 1.02322 1.02907 0.92746 1.23285 1.00536 0.97385 1.00616 0.91863 0.77477 0.93801 0.89572 0.82938 0.93643 0.90385 0.75977 0.90540 0.90172 0.91307 0.91062 0.90731 0.90974 0.92833 0.88474 0.87746 0.88707 0.89029 0.89653 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C 0.44 10.11 7.82 -10.98 -0.09 10.03 16 11 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 13 N -0.67 -9.94 5.85 -115.06 -0.67 -10.61 16 14 C 0.05 0.57 5.22 -3.83 -0.02 0.55 16 15 C 0.18 2.04 2.51 -67.94 -0.17 1.87 16 16 H 0.09 1.17 7.34 -51.93 -0.38 0.79 16 17 N -0.70 -7.89 4.74 -53.81 -0.26 -8.15 16 18 C 0.53 7.01 6.51 -10.99 -0.07 6.94 16 19 O -0.53 -8.81 13.53 -14.30 -0.19 -9.01 16 20 C 0.07 0.83 3.05 -27.84 -0.09 0.75 16 21 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.14 -1.21 5.37 -26.59 -0.14 -1.35 16 23 C -0.12 -0.87 6.03 -26.55 -0.16 -1.03 16 24 C -0.16 -1.14 6.14 -26.59 -0.16 -1.31 16 25 C 0.06 0.53 6.84 37.21 0.25 0.78 16 26 O -0.35 -4.60 9.94 -55.09 -0.55 -5.15 16 27 C -0.17 -1.65 5.36 -90.62 -0.49 -2.14 16 28 C -0.17 -1.67 10.18 -26.69 -0.27 -1.95 16 29 C -0.18 -1.95 9.74 -26.69 -0.26 -2.21 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.41 4.05 8.45 -40.82 -0.34 3.70 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.12 1.60 5.02 -51.93 -0.26 1.34 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -33.17 405.93 -10.08 -43.25 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -8.32 Total: 16.98 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.93 Total: 3.83 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.26 Total: -56.47 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.65 Total: -29.61 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.17 -10.08 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269062271.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.517 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds