Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46942 * 239.99591 * 3 2 1 5 5 H 1.48507 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47443 * 119.99615 * 3 2 1 7 7 C 1.38951 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00047 * 180.02562 * 9 7 2 11 11 O 1.21285 * 119.99941 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99883 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46910 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99976 * 179.59975 * 13 12 10 15 15 C 1.53000 * 115.54572 * 294.62350 * 14 13 12 16 16 N 1.46493 * 109.47449 * 279.61581 * 15 14 13 17 17 C 1.34777 * 120.00032 * 175.59249 * 16 15 14 18 18 O 1.21283 * 120.00023 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00051 * 179.97438 * 17 16 15 20 20 C 1.52993 * 109.47275 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47353 * 180.02562 * 20 19 17 22 22 H 1.09004 * 109.98780 * 306.08607 * 21 20 19 23 23 C 1.54097 * 109.87821 * 185.00026 * 21 20 19 24 24 C 1.54806 * 104.18803 * 238.54384 * 23 21 20 25 25 C 1.55000 * 102.12395 * 339.10509 * 24 23 21 26 26 O 1.43745 * 109.87734 * 67.16673 * 21 20 19 27 27 C 1.52999 * 117.52149 * 80.32599 * 14 13 12 28 28 C 1.53001 * 117.49823 * 148.95710 * 14 13 12 29 29 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00321 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47114 * 59.99957 * 12 10 9 32 32 H 1.09002 * 109.47391 * 300.00004 * 12 10 9 33 33 H 1.00901 * 111.00337 * 303.54664 * 13 12 10 34 34 H 1.09002 * 109.46650 * 159.61307 * 15 14 13 35 35 H 1.09003 * 109.47146 * 39.62345 * 15 14 13 36 36 H 0.97006 * 119.99991 * 355.58757 * 16 15 14 37 37 H 1.09004 * 109.46755 * 59.99987 * 19 17 16 38 38 H 1.08996 * 109.46806 * 300.00159 * 19 17 16 39 39 H 1.09006 * 109.46880 * 59.99873 * 20 19 17 40 40 H 1.08999 * 109.47079 * 300.00276 * 20 19 17 41 41 H 1.09009 * 110.48735 * 119.87007 * 23 21 20 42 42 H 1.08994 * 110.49158 * 357.22134 * 23 21 20 43 43 H 1.09006 * 110.90801 * 97.31588 * 24 23 21 44 44 H 1.08997 * 110.91230 * 220.88718 * 24 23 21 45 45 H 1.08998 * 110.61605 * 155.54251 * 25 24 23 46 46 H 1.09005 * 110.61578 * 278.53912 * 25 24 23 47 47 H 1.08990 * 117.50270 * 214.97404 * 27 14 13 48 48 H 1.09001 * 117.49635 * 359.97438 * 27 14 13 49 49 H 1.08993 * 117.50022 * 359.97438 * 28 14 13 50 50 H 1.09001 * 117.49574 * 144.97307 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4982 -7.2708 0.0128 15 6 0.6848 -7.5703 1.2736 16 7 1.5796 -8.0501 2.3296 17 6 1.0958 -8.2933 3.5638 18 8 -0.0804 -8.1155 3.8001 19 6 2.0162 -8.7873 4.6501 20 6 1.2214 -8.9815 5.9429 21 6 2.1559 -9.4825 7.0459 22 1 2.6837 -10.3752 6.7101 23 6 1.3439 -9.8005 8.3163 24 6 1.9667 -8.8903 9.4026 25 6 3.3623 -8.5782 8.8047 26 8 3.1015 -8.4557 7.3890 27 6 0.9537 -7.7903 -1.3193 28 6 2.1799 -8.4496 -0.6848 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6175 -4.9212 -0.8881 32 1 0.6168 -4.9201 0.8919 33 1 2.8292 -5.9164 -0.7824 34 1 -0.0594 -8.3355 1.0525 35 1 0.1835 -6.6617 1.6070 36 1 2.5203 -8.1927 2.1406 37 1 2.8071 -8.0559 4.8166 38 1 2.4574 -9.7372 4.3483 39 1 0.4302 -9.7127 5.7766 40 1 0.7805 -8.0314 6.2445 41 1 1.4559 -10.8503 8.5879 42 1 0.2925 -9.5538 8.1688 43 1 1.3837 -7.9777 9.5265 44 1 2.0594 -9.4221 10.3495 45 1 3.7514 -7.6426 9.2064 46 1 4.0547 -9.3976 8.9980 47 1 0.0160 -8.3453 -1.2976 48 1 1.1146 -7.1736 -2.2035 49 1 3.1477 -8.2669 -1.1516 50 1 2.0491 -9.4385 -0.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269379021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -104.150832 kcal Electronic energy + Delta-G solvation = -28955.198014 eV Core-core repulsion = 24789.605004 eV Total energy + Delta-G solvation = -4165.593010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09698 -39.56915 -38.71478 -37.74596 -34.21574 -33.94355 -33.72985 -32.60094 -32.35833 -31.17316 -29.24906 -27.06230 -26.51312 -24.17548 -24.06426 -22.59685 -22.14427 -21.14537 -20.27269 -19.65512 -19.22123 -17.88064 -17.18904 -16.69292 -16.54813 -16.16959 -16.04309 -15.70662 -15.38826 -15.17157 -14.97994 -14.47410 -14.08253 -13.98518 -13.94065 -13.59441 -13.48934 -13.24448 -13.12263 -12.52063 -12.45796 -12.20570 -12.14473 -11.98310 -11.70427 -11.64127 -11.62915 -11.46963 -11.23672 -11.13300 -11.06639 -10.93202 -10.83216 -10.43252 -10.31354 -10.19111 -9.95149 -9.77041 -9.49063 -9.01261 -8.43283 -8.07570 -7.95113 -6.40203 -3.81228 2.69037 3.05883 3.21256 3.26949 3.31250 3.57425 3.67619 3.90500 4.07030 4.23320 4.26681 4.38695 4.49708 4.57734 4.63406 4.69945 4.73749 4.84701 4.89312 5.01056 5.12430 5.16104 5.26469 5.27355 5.34583 5.37660 5.45326 5.47649 5.51562 5.57140 5.58092 5.63932 5.72749 5.74787 5.76964 5.86549 5.89520 5.95646 6.01465 6.07212 6.26872 6.45122 6.64493 7.13442 7.52332 7.56229 7.58113 8.06696 8.26510 8.61928 9.18610 9.54996 10.06117 10.77387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.002271 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.058800 B =12327.155487 C =14565.415712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.038 3.962 15 C 0.167 3.833 16 N -0.718 5.718 17 C 0.512 3.488 18 O -0.549 6.549 19 C -0.138 4.138 20 C -0.101 4.101 21 C 0.075 3.925 22 H 0.068 0.932 23 C -0.153 4.153 24 C -0.157 4.157 25 C 0.045 3.955 26 O -0.371 6.371 27 C -0.207 4.207 28 C -0.166 4.166 29 H 0.272 0.728 30 H 0.393 0.607 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.354 0.646 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.405 0.595 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -23.622 10.848 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.055 4.055 15 C 0.042 3.958 16 N -0.369 5.369 17 C 0.299 3.701 18 O -0.426 6.426 19 C -0.178 4.178 20 C -0.138 4.138 21 C 0.017 3.983 22 H 0.086 0.914 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.290 6.290 27 C -0.247 4.247 28 C -0.204 4.204 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.174 0.826 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.118 0.882 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.375 -23.108 11.552 25.872 hybrid contribution -0.157 0.650 -0.961 1.170 sum 1.218 -22.459 10.592 24.861 Atomic orbital electron populations 1.69607 1.05937 1.28297 1.50367 1.25273 0.95642 0.99745 0.97275 0.85912 0.78759 0.80438 0.79069 1.19924 1.20963 1.19855 1.19647 0.93328 0.82215 1.47779 0.87972 1.41848 1.09233 1.04575 1.64165 1.19753 0.88344 0.84677 0.84637 1.90519 1.13716 1.87069 1.55603 1.21682 0.94441 0.90520 1.01526 1.59856 1.17516 0.98014 1.50334 1.21875 1.00358 0.91090 0.92201 1.20688 0.90834 0.99778 0.84451 1.45896 1.13224 1.67588 1.10214 1.20728 0.88971 0.77282 0.83162 1.90695 1.17532 1.52637 1.81778 1.21627 0.99170 1.03239 0.93741 1.21531 0.96820 1.03422 0.92077 1.22819 0.89706 0.90854 0.94901 0.91402 1.23006 1.01175 1.00307 0.94581 1.23139 0.96980 1.00563 0.98750 1.23559 0.96162 1.01884 0.81515 1.88944 1.62402 1.53919 1.23783 1.23632 0.98379 1.04992 0.97737 1.23137 0.97460 0.96556 1.03229 0.91788 0.77417 0.93490 0.89452 0.82575 0.91253 0.90418 0.76042 0.88008 0.89195 0.90087 0.90237 0.90702 0.90041 0.90350 0.90360 0.88952 0.92291 0.88441 0.88424 0.88179 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.49 9.68 -14.94 -0.14 -8.63 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.50 5.29 -10.97 -0.06 -14.55 16 10 C 0.44 10.53 7.82 -10.98 -0.09 10.44 16 11 O -0.58 -15.94 15.79 5.55 0.09 -15.85 16 12 C 0.05 0.90 6.01 -4.98 -0.03 0.87 16 13 N -0.63 -9.85 6.29 -101.21 -0.64 -10.49 16 14 C 0.04 0.46 1.81 -131.60 -0.24 0.22 16 15 C 0.17 2.09 5.68 -4.05 -0.02 2.06 16 16 N -0.72 -8.37 5.52 -60.29 -0.33 -8.71 16 17 C 0.51 6.56 7.83 -10.98 -0.09 6.48 16 18 O -0.55 -9.06 15.98 5.55 0.09 -8.97 16 19 C -0.14 -1.34 5.62 -27.88 -0.16 -1.50 16 20 C -0.10 -0.98 3.99 -26.73 -0.11 -1.09 16 21 C 0.07 0.63 3.41 -26.16 -0.09 0.54 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 23 C -0.15 -1.03 6.64 -25.21 -0.17 -1.20 16 24 C -0.16 -1.02 7.15 -24.72 -0.18 -1.19 16 25 C 0.05 0.34 7.73 38.21 0.30 0.64 16 26 O -0.37 -3.87 10.84 -35.23 -0.38 -4.26 16 27 C -0.21 -2.11 10.07 -26.73 -0.27 -2.38 16 28 C -0.17 -1.57 9.89 -26.73 -0.26 -1.83 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.53 6.62 -51.93 -0.34 1.19 16 33 H 0.35 5.69 8.32 -39.29 -0.33 5.36 16 34 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 35 H 0.08 1.16 6.52 -51.93 -0.34 0.82 16 36 H 0.40 4.06 8.41 -40.82 -0.34 3.71 16 37 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -34.05 413.07 -9.26 -43.32 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -8.32 Total: 17.19 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.64 Total: 3.94 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.30 Total: -57.91 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.21 Total: -29.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.05 -9.26 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269379021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.832 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds