Wall clock time and date at job start Sat Apr 11 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46942 * 239.99591 * 3 2 1 5 5 H 1.48507 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47443 * 119.99615 * 3 2 1 7 7 C 1.38951 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00047 * 180.02562 * 9 7 2 11 11 O 1.21285 * 119.99941 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99883 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46910 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99976 * 179.59975 * 13 12 10 15 15 C 1.53000 * 115.54572 * 294.62350 * 14 13 12 16 16 N 1.46493 * 109.47449 * 279.61581 * 15 14 13 17 17 C 1.34777 * 120.00032 * 175.59249 * 16 15 14 18 18 O 1.21283 * 120.00023 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00051 * 179.97438 * 17 16 15 20 20 C 1.52993 * 109.47275 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47353 * 180.02562 * 20 19 17 22 22 H 1.09004 * 109.98780 * 306.08607 * 21 20 19 23 23 C 1.54097 * 109.87821 * 185.00026 * 21 20 19 24 24 C 1.54806 * 104.18803 * 238.54384 * 23 21 20 25 25 C 1.55000 * 102.12395 * 339.10509 * 24 23 21 26 26 O 1.43745 * 109.87734 * 67.16673 * 21 20 19 27 27 C 1.52999 * 117.52149 * 80.32599 * 14 13 12 28 28 C 1.53001 * 117.49823 * 148.95710 * 14 13 12 29 29 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00321 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47114 * 59.99957 * 12 10 9 32 32 H 1.09002 * 109.47391 * 300.00004 * 12 10 9 33 33 H 1.00901 * 111.00337 * 303.54664 * 13 12 10 34 34 H 1.09002 * 109.46650 * 159.61307 * 15 14 13 35 35 H 1.09003 * 109.47146 * 39.62345 * 15 14 13 36 36 H 0.97006 * 119.99991 * 355.58757 * 16 15 14 37 37 H 1.09004 * 109.46755 * 59.99987 * 19 17 16 38 38 H 1.08996 * 109.46806 * 300.00159 * 19 17 16 39 39 H 1.09006 * 109.46880 * 59.99873 * 20 19 17 40 40 H 1.08999 * 109.47079 * 300.00276 * 20 19 17 41 41 H 1.09009 * 110.48735 * 119.87007 * 23 21 20 42 42 H 1.08994 * 110.49158 * 357.22134 * 23 21 20 43 43 H 1.09006 * 110.90801 * 97.31588 * 24 23 21 44 44 H 1.08997 * 110.91230 * 220.88718 * 24 23 21 45 45 H 1.08998 * 110.61605 * 155.54251 * 25 24 23 46 46 H 1.09005 * 110.61578 * 278.53912 * 25 24 23 47 47 H 1.08990 * 117.50270 * 214.97404 * 27 14 13 48 48 H 1.09001 * 117.49635 * 359.97438 * 27 14 13 49 49 H 1.08993 * 117.50022 * 359.97438 * 28 14 13 50 50 H 1.09001 * 117.49574 * 144.97307 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9794 0.0027 14 6 1.4982 -7.2708 0.0128 15 6 0.6848 -7.5703 1.2736 16 7 1.5796 -8.0501 2.3296 17 6 1.0958 -8.2933 3.5638 18 8 -0.0804 -8.1155 3.8001 19 6 2.0162 -8.7873 4.6501 20 6 1.2214 -8.9815 5.9429 21 6 2.1559 -9.4825 7.0459 22 1 2.6837 -10.3752 6.7101 23 6 1.3439 -9.8005 8.3163 24 6 1.9667 -8.8903 9.4026 25 6 3.3623 -8.5782 8.8047 26 8 3.1015 -8.4557 7.3890 27 6 0.9537 -7.7903 -1.3193 28 6 2.1799 -8.4496 -0.6848 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6175 -4.9212 -0.8881 32 1 0.6168 -4.9201 0.8919 33 1 2.8292 -5.9164 -0.7824 34 1 -0.0594 -8.3355 1.0525 35 1 0.1835 -6.6617 1.6070 36 1 2.5203 -8.1927 2.1406 37 1 2.8071 -8.0559 4.8166 38 1 2.4574 -9.7372 4.3483 39 1 0.4302 -9.7127 5.7766 40 1 0.7805 -8.0314 6.2445 41 1 1.4559 -10.8503 8.5879 42 1 0.2925 -9.5538 8.1688 43 1 1.3837 -7.9777 9.5265 44 1 2.0594 -9.4221 10.3495 45 1 3.7514 -7.6426 9.2064 46 1 4.0547 -9.3976 8.9980 47 1 0.0160 -8.3453 -1.2976 48 1 1.1146 -7.1736 -2.2035 49 1 3.1477 -8.2669 -1.1516 50 1 2.0491 -9.4385 -0.2454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269379021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:37 Heat of formation + Delta-G solvation = -130.557067 kcal Electronic energy + Delta-G solvation = -28956.343074 eV Core-core repulsion = 24789.605004 eV Total energy + Delta-G solvation = -4166.738070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04064 -40.42838 -40.09004 -39.17803 -36.04868 -35.18271 -34.52808 -33.94355 -33.22194 -32.95158 -29.99521 -28.30326 -27.85364 -25.90220 -24.90731 -23.40394 -22.75713 -21.78294 -21.29466 -21.10850 -20.61853 -19.93477 -18.22559 -17.83175 -17.37462 -17.15832 -17.06027 -16.74685 -16.48358 -16.36567 -16.23035 -15.93815 -15.78731 -15.45493 -14.70837 -14.56235 -14.48787 -14.37113 -14.13660 -13.78183 -13.67869 -13.53618 -13.37879 -12.96584 -12.90614 -12.86060 -12.59523 -12.45802 -12.40986 -12.26487 -12.14031 -11.91250 -11.85152 -11.80284 -11.52405 -11.51091 -11.22756 -10.83434 -10.58978 -10.35561 -10.05094 -10.03674 -9.28698 -8.48721 -5.98164 1.38200 1.40000 1.51438 1.67991 2.00730 2.14540 2.26801 2.65812 2.97899 3.03057 3.18168 3.41328 3.60135 3.64966 3.72249 3.78472 3.91048 4.00966 4.05976 4.11678 4.19715 4.24820 4.40383 4.41831 4.44983 4.50851 4.58217 4.62799 4.69573 4.75783 4.77792 4.80335 4.83126 4.84254 4.96723 4.99264 5.08328 5.13705 5.20100 5.21274 5.31366 5.38104 5.48082 5.83261 6.03876 6.04017 6.32752 6.56068 6.61132 7.09041 7.29259 7.51967 8.06477 8.68532 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.002271 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.058800 B =12327.155487 C =14565.415712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.068 3.932 13 N -0.637 5.637 14 C 0.020 3.980 15 C 0.169 3.831 16 N -0.710 5.710 17 C 0.507 3.493 18 O -0.591 6.591 19 C -0.130 4.130 20 C -0.098 4.098 21 C 0.074 3.926 22 H 0.087 0.913 23 C -0.153 4.153 24 C -0.155 4.155 25 C 0.038 3.962 26 O -0.402 6.402 27 C -0.198 4.198 28 C -0.142 4.142 29 H 0.278 0.722 30 H 0.395 0.605 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.351 0.649 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.414 0.586 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -25.495 10.844 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.507 6.507 12 C -0.064 4.064 13 N -0.269 5.269 14 C -0.073 4.073 15 C 0.045 3.955 16 N -0.361 5.361 17 C 0.295 3.705 18 O -0.472 6.472 19 C -0.169 4.169 20 C -0.136 4.136 21 C 0.017 3.983 22 H 0.105 0.895 23 C -0.190 4.190 24 C -0.193 4.193 25 C -0.038 4.038 26 O -0.322 6.322 27 C -0.238 4.238 28 C -0.180 4.180 29 H 0.088 0.912 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.171 0.829 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.131 0.869 48 H 0.113 0.887 49 H 0.123 0.877 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.863 -25.009 11.538 27.605 hybrid contribution -0.304 1.177 -0.968 1.554 sum 1.558 -23.832 10.569 26.117 Atomic orbital electron populations 1.69676 1.06923 1.29443 1.50122 1.26097 0.96573 1.02575 0.96172 0.84964 0.77749 0.76447 0.79030 1.19413 1.19450 1.19757 1.19645 0.92740 0.83941 1.50121 0.90156 1.41940 1.09317 1.04803 1.64901 1.20776 0.88247 0.86044 0.82393 1.90482 1.15604 1.87929 1.56703 1.21448 0.94168 0.88203 1.02581 1.59798 1.17619 0.98896 1.50551 1.21801 1.02214 0.90312 0.92965 1.20618 0.91226 0.98882 0.84803 1.45891 1.13633 1.66715 1.09869 1.21303 0.88793 0.76559 0.83857 1.90674 1.19493 1.54575 1.82482 1.21636 0.98182 1.04519 0.92596 1.21491 0.97302 1.02013 0.92775 1.22904 0.89526 0.90833 0.95038 0.89546 1.23033 1.00543 1.01552 0.93897 1.23144 0.96176 1.00334 0.99622 1.23743 0.97055 1.02657 0.80313 1.88906 1.62920 1.54919 1.25441 1.23676 0.99588 1.04574 0.96011 1.23248 0.97328 0.96128 1.01258 0.91245 0.77099 0.91445 0.89106 0.82871 0.89986 0.93376 0.74922 0.88530 0.85847 0.89749 0.93287 0.88615 0.90655 0.91510 0.88269 0.88909 0.90667 0.86925 0.88746 0.87730 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.34 -19.45 9.68 84.04 0.81 -18.64 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.57 -30.37 5.29 -306.99 -1.62 -31.99 16 10 C 0.44 21.42 7.82 87.66 0.69 22.11 16 11 O -0.62 -34.75 15.79 -3.05 -0.05 -34.80 16 12 C 0.07 2.44 6.01 85.56 0.51 2.96 16 13 N -0.64 -19.71 6.29 -474.13 -2.98 -22.69 16 14 C 0.02 0.44 1.81 3.53 0.01 0.44 16 15 C 0.17 4.09 5.68 86.38 0.49 4.58 16 16 N -0.71 -15.90 5.52 -463.06 -2.55 -18.46 16 17 C 0.51 12.88 7.83 87.66 0.69 13.57 16 18 O -0.59 -19.96 15.98 -3.04 -0.05 -20.01 16 19 C -0.13 -2.41 5.62 29.85 0.17 -2.24 16 20 C -0.10 -1.90 3.99 30.59 0.12 -1.77 16 21 C 0.07 1.16 3.41 30.97 0.11 1.27 16 22 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 23 C -0.15 -1.86 6.64 31.58 0.21 -1.65 16 24 C -0.16 -1.84 7.15 31.90 0.23 -1.62 16 25 C 0.04 0.54 7.73 72.67 0.56 1.10 16 26 O -0.40 -8.19 10.84 -148.98 -1.61 -9.81 16 27 C -0.20 -3.54 10.07 30.59 0.31 -3.23 16 28 C -0.14 -2.25 9.89 30.60 0.30 -1.95 16 29 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.40 20.11 7.90 -92.70 -0.73 19.38 16 31 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.09 3.23 6.62 -2.39 -0.02 3.21 16 33 H 0.35 11.11 8.32 -89.69 -0.75 10.36 16 34 H 0.08 1.78 7.94 -2.39 -0.02 1.76 16 35 H 0.05 1.46 6.52 -2.39 -0.02 1.44 16 36 H 0.41 7.64 8.41 -92.70 -0.78 6.86 16 37 H 0.10 1.94 7.91 -2.38 -0.02 1.92 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.55 8.10 -2.38 -0.02 1.53 16 40 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 1.00 7.70 -2.39 -0.02 0.99 16 43 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.11 1.70 8.08 -2.39 -0.02 1.68 16 48 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.70 413.07 -2.18 -77.88 By element: Atomic # 1 Polarization: 51.50 SS G_CDS: -1.29 Total: 50.21 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 5.67 Total: 14.60 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.88 Total: -123.83 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -1.71 Total: -64.61 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.70 -2.18 -77.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269379021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.676 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds