Wall clock time and date at job start Sat Apr 11 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00284 * 2 1 4 4 H 1.48499 * 109.47128 * 274.06377 * 3 2 1 5 5 H 1.48497 * 109.47404 * 34.06699 * 3 2 1 6 6 H 1.48503 * 109.47170 * 154.06975 * 3 2 1 7 7 C 1.38812 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00301 * 197.50221 * 7 2 1 9 9 N 1.36936 * 120.00148 * 17.50482 * 7 2 1 10 10 C 1.46929 * 120.63484 * 207.95920 * 9 7 2 11 11 C 1.53189 * 108.77528 * 233.63054 * 10 9 7 12 12 C 1.53041 * 109.31242 * 305.36034 * 11 10 9 13 13 N 1.46504 * 109.46071 * 181.38537 * 12 11 10 14 14 C 1.34772 * 120.00117 * 154.97030 * 13 12 11 15 15 O 1.21596 * 120.00069 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00218 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00060 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47138 * 180.02562 * 17 16 14 19 19 H 1.08999 * 109.81417 * 59.40205 * 18 17 16 20 20 C 1.54181 * 109.87988 * 180.29280 * 18 17 16 21 21 C 1.54808 * 102.91941 * 140.82504 * 20 18 17 22 22 H 1.09004 * 114.72396 * 204.42731 * 21 20 18 23 23 C 1.54057 * 108.83574 * 75.50797 * 21 20 18 24 24 O 1.43286 * 107.84694 * 232.88547 * 23 21 20 25 25 C 1.43597 * 109.84469 * 357.27772 * 24 23 21 26 26 C 1.54822 * 105.36565 * 25.23776 * 25 24 23 27 27 H 1.09003 * 113.38071 * 201.91473 * 26 25 24 28 28 O 1.42992 * 109.81830 * 298.54800 * 18 17 16 29 29 C 1.53040 * 109.52647 * 61.37407 * 12 11 10 30 30 C 1.46934 * 120.63114 * 27.98187 * 9 7 2 31 31 H 0.97007 * 119.99429 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58571 * 113.83787 * 10 9 7 33 33 H 1.08997 * 109.57926 * 353.41464 * 10 9 7 34 34 H 1.09005 * 109.49780 * 185.41310 * 11 10 9 35 35 H 1.08998 * 109.52963 * 65.32822 * 11 10 9 36 36 H 1.08999 * 109.46331 * 301.36218 * 12 11 10 37 37 H 0.96995 * 119.99912 * 334.97669 * 13 12 11 38 38 H 0.97005 * 120.00014 * 0.02562 * 16 14 13 39 39 H 1.09003 * 109.47348 * 60.00466 * 17 16 14 40 40 H 1.08999 * 109.47680 * 300.00131 * 17 16 14 41 41 H 1.08997 * 110.72442 * 22.47253 * 20 18 17 42 42 H 1.08999 * 110.72514 * 259.18478 * 20 18 17 43 43 H 1.09003 * 109.79094 * 352.47400 * 23 21 20 44 44 H 1.09000 * 109.79286 * 113.29147 * 23 21 20 45 45 H 1.09004 * 110.26785 * 144.21302 * 25 24 23 46 46 H 1.09000 * 110.26589 * 266.17305 * 25 24 23 47 47 H 1.09005 * 109.49339 * 58.58072 * 29 12 11 48 48 H 1.08995 * 109.49931 * 178.67205 * 29 12 11 49 49 H 1.09000 * 109.58660 * 246.16217 * 30 9 7 50 50 H 1.09004 * 109.58132 * 6.57979 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4118 2.0959 -1.3965 5 1 1.4934 2.6263 0.7842 6 1 3.5882 1.4167 0.6122 7 6 2.0102 -1.2022 0.0005 8 1 3.0526 -1.2238 0.2818 9 7 1.3730 -2.3608 -0.3556 10 6 1.8149 -3.6543 0.1831 11 6 2.0768 -4.6111 -0.9842 12 6 0.8269 -4.6906 -1.8637 13 7 1.0623 -5.6302 -2.9628 14 6 0.0219 -6.2502 -3.5539 15 8 -1.1123 -6.0294 -3.1753 16 7 0.2385 -7.1150 -4.5646 17 6 -0.8925 -7.7886 -5.2075 18 6 -0.3754 -8.7094 -6.3146 19 1 0.3034 -9.4502 -5.8920 20 6 -1.5593 -9.4180 -7.0027 21 6 -1.1447 -9.4153 -8.4943 22 1 -1.9745 -9.4788 -9.1982 23 6 -0.0593 -10.4868 -8.7107 24 8 1.0556 -9.8586 -9.3553 25 6 0.7490 -8.4826 -9.6281 26 6 -0.3244 -8.0868 -8.5849 27 1 -0.9218 -7.2257 -8.8844 28 8 0.3057 -7.9385 -7.3077 29 6 0.5146 -3.3056 -2.4351 30 6 0.2347 -2.3341 -1.2843 31 1 -0.4850 0.8402 0.0004 32 1 1.0377 -4.0669 0.8265 33 1 2.7319 -3.5173 0.7561 34 1 2.3123 -5.6022 -0.5964 35 1 2.9151 -4.2432 -1.5758 36 1 -0.0167 -5.0352 -1.2657 37 1 1.9671 -5.8061 -3.2650 38 1 1.1434 -7.2915 -4.8664 39 1 -1.5624 -7.0438 -5.6373 40 1 -1.4325 -8.3788 -4.4672 41 1 -2.4821 -8.8561 -6.8579 42 1 -1.6657 -10.4381 -6.6338 43 1 0.2526 -10.8957 -7.7496 44 1 -0.4492 -11.2848 -9.3426 45 1 1.6395 -7.8659 -9.5062 46 1 0.3529 -8.3771 -10.6381 47 1 1.3677 -2.9496 -3.0128 48 1 -0.3618 -3.3673 -3.0802 49 1 -0.6714 -2.6389 -0.7606 50 1 0.1091 -1.3260 -1.6794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332284242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:48 Heat of formation + Delta-G solvation = -119.438059 kcal Electronic energy + Delta-G solvation = -29965.864446 eV Core-core repulsion = 25799.608532 eV Total energy + Delta-G solvation = -4166.255914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92170 -41.09898 -39.15554 -38.20580 -36.07322 -35.57792 -33.94112 -33.64772 -31.97986 -31.56834 -30.89329 -29.38155 -27.12743 -26.17571 -23.95322 -23.87313 -23.53494 -22.13509 -21.97836 -21.62670 -21.03976 -19.36109 -18.71467 -18.33498 -17.57367 -17.20303 -16.89312 -16.81083 -16.34084 -16.22254 -15.81068 -15.65954 -15.38551 -15.34414 -15.16238 -14.75316 -14.54217 -14.41830 -14.24605 -14.01657 -13.81319 -13.20529 -13.18232 -13.02425 -12.76658 -12.62654 -12.60255 -12.56919 -12.45170 -12.11768 -12.02487 -12.00803 -11.85853 -11.69255 -11.53203 -11.43554 -11.18853 -10.71741 -10.58519 -10.40273 -10.30193 -9.72141 -8.71612 -7.87060 -5.33170 1.47575 1.49121 1.58572 1.69707 2.18814 2.48857 2.51942 2.92810 3.18918 3.26506 3.34076 3.62492 3.67218 3.68400 3.89226 3.92773 3.95634 4.07047 4.10273 4.19118 4.35399 4.36194 4.45464 4.48376 4.56891 4.62097 4.67651 4.74725 4.78604 4.80812 4.83416 4.88340 4.92870 4.99936 5.05780 5.09355 5.11726 5.13818 5.32535 5.44972 5.48540 5.62013 5.64536 5.69432 5.99750 6.01776 6.04406 6.38906 7.12984 7.14421 7.62737 7.84501 8.37624 9.20144 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.001924 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.363296 B =14546.448769 C =14885.518672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.260 4.260 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.640 6.640 16 N -0.729 5.729 17 C 0.132 3.868 18 C 0.077 3.923 19 H 0.096 0.904 20 C -0.135 4.135 21 C -0.144 4.144 22 H 0.138 0.862 23 C 0.050 3.950 24 O -0.405 6.405 25 C 0.045 3.955 26 C 0.040 3.960 27 H 0.115 0.885 28 O -0.381 6.381 29 C -0.130 4.130 30 C 0.183 3.817 31 H 0.249 0.751 32 H 0.013 0.987 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.041 0.959 49 H -0.010 1.010 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -24.689 -20.205 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.076 3.924 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.521 6.521 16 N -0.385 5.385 17 C 0.007 3.993 18 C 0.019 3.981 19 H 0.114 0.886 20 C -0.172 4.172 21 C -0.162 4.162 22 H 0.156 0.844 23 C -0.026 4.026 24 O -0.325 6.325 25 C -0.031 4.031 26 C -0.018 4.018 27 H 0.133 0.867 28 O -0.301 6.301 29 C -0.170 4.170 30 C 0.057 3.943 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.246 0.754 38 H 0.246 0.754 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.008 0.992 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.219 -24.371 -19.842 31.427 hybrid contribution 0.299 1.212 0.003 1.248 sum 0.080 -23.159 -19.839 30.495 Atomic orbital electron populations 1.70222 1.06913 1.25828 1.55505 1.25893 0.96028 1.01861 1.01374 0.85207 0.78310 0.79370 0.77295 1.21434 1.22427 1.18750 1.19584 0.93205 0.85845 1.40365 0.90796 1.44363 1.36156 1.02639 1.50148 1.21052 0.97933 0.85509 0.93963 1.22138 0.96193 1.00453 0.97227 1.20500 0.98405 0.86991 0.86525 1.45111 1.08707 1.46402 1.37867 1.16191 0.84559 0.79293 0.80213 1.90902 1.23230 1.69638 1.68360 1.44847 1.11322 1.46416 1.35904 1.21662 0.88189 0.95220 0.94224 1.23001 0.94899 0.91853 0.88367 0.88589 1.23015 0.97990 1.03333 0.92908 1.24283 0.99445 0.93901 0.98610 0.84419 1.23327 0.85481 0.95495 0.98260 1.88414 1.39810 1.23991 1.80248 1.23684 0.99283 0.82225 0.97924 1.24711 0.93957 0.98453 0.84660 0.86716 1.88275 1.53858 1.70227 1.17707 1.22316 1.00082 0.96160 0.98467 1.20460 0.87948 0.97275 0.88663 0.94199 0.96934 0.91260 0.89023 0.90705 0.92614 0.75419 0.75379 0.92927 0.90520 0.88928 0.87058 0.90854 0.89809 0.89592 0.89177 0.92254 0.93991 0.99237 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.57 11.22 21.65 0.24 -57.33 16 2 C -0.06 -3.22 4.90 84.86 0.42 -2.81 16 3 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.26 -14.39 9.58 84.03 0.81 -13.59 16 8 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.27 2.99 -699.09 -2.09 -33.36 16 10 C 0.14 5.78 6.52 86.36 0.56 6.34 16 11 C -0.12 -3.81 5.55 30.67 0.17 -3.64 16 12 C 0.18 6.43 2.42 45.02 0.11 6.54 16 13 N -0.73 -20.36 5.08 -457.67 -2.33 -22.69 16 14 C 0.70 21.59 8.53 179.06 1.53 23.12 16 15 O -0.64 -26.25 16.01 -4.02 -0.06 -26.31 16 16 N -0.73 -15.92 5.47 -478.54 -2.62 -18.54 16 17 C 0.13 2.46 5.22 86.38 0.45 2.91 16 18 C 0.08 0.97 3.03 30.99 0.09 1.06 16 19 H 0.10 1.07 8.06 -2.39 -0.02 1.05 16 20 C -0.13 -0.98 5.76 31.61 0.18 -0.79 16 21 C -0.14 -1.04 4.37 -8.63 -0.04 -1.08 16 22 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 23 C 0.05 0.50 7.01 72.34 0.51 1.01 16 24 O -0.40 -6.64 11.36 -147.26 -1.67 -8.31 16 25 C 0.05 0.56 7.38 72.60 0.54 1.10 16 26 C 0.04 0.46 4.78 32.40 0.15 0.62 16 27 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 28 O -0.38 -6.24 10.29 -147.26 -1.52 -7.75 16 29 C -0.13 -5.47 5.65 30.67 0.17 -5.29 16 30 C 0.18 9.52 5.31 86.36 0.46 9.98 16 31 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 34 H 0.09 2.30 8.14 -2.38 -0.02 2.29 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 37 H 0.41 8.48 8.62 -92.71 -0.80 7.68 16 38 H 0.41 6.95 8.41 -92.70 -0.78 6.17 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 0.65 7.84 -2.39 -0.02 0.63 16 42 H 0.11 0.41 7.99 -2.39 -0.02 0.39 16 43 H 0.07 0.70 7.21 -2.39 -0.02 0.69 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 48 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 49 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.05 3.16 6.06 -2.38 -0.01 3.15 16 Total: -1.00 -77.86 391.09 -2.54 -80.40 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.63 Total: 20.85 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.11 Total: 25.48 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -6.79 Total: -131.92 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -3.25 Total: -42.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.86 -2.54 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332284242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.036 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds