Wall clock time and date at job start Sat Apr 11 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47002 * 269.99715 * 3 2 1 5 5 H 1.48499 * 109.46987 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.46830 * 150.00042 * 3 2 1 7 7 C 1.37879 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47051 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00118 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99665 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.62925 * 180.02562 * 13 11 10 15 15 C 1.53189 * 108.77201 * 233.62878 * 14 13 11 16 16 C 1.53041 * 109.31283 * 305.36057 * 15 14 13 17 17 N 1.46501 * 109.46151 * 181.38748 * 16 15 14 18 18 C 1.34776 * 120.00193 * 154.96964 * 17 16 15 19 19 O 1.21585 * 119.99541 * 4.97292 * 18 17 16 20 20 N 1.34766 * 120.00211 * 184.96857 * 18 17 16 21 21 C 1.47168 * 120.94467 * 354.72364 * 20 18 17 22 22 C 1.53300 * 108.37665 * 230.51527 * 21 20 18 23 23 O 1.42955 * 109.26383 * 307.77025 * 22 21 20 24 24 C 1.42963 * 114.16753 * 62.55533 * 23 22 21 25 25 C 1.47156 * 120.98374 * 174.78341 * 20 18 17 26 26 C 1.53032 * 109.52515 * 61.37530 * 16 15 14 27 27 C 1.46922 * 120.63405 * 0.02562 * 13 11 10 28 28 H 0.97003 * 120.00030 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47290 * 60.00453 * 9 7 2 30 30 H 1.08996 * 109.47390 * 299.99878 * 9 7 2 31 31 H 1.09003 * 109.46741 * 60.00071 * 10 9 7 32 32 H 1.08996 * 109.46886 * 300.00140 * 10 9 7 33 33 H 1.09001 * 109.58905 * 113.83704 * 14 13 11 34 34 H 1.09001 * 109.70134 * 353.48392 * 14 13 11 35 35 H 1.09004 * 109.49500 * 185.41223 * 15 14 13 36 36 H 1.09000 * 109.50129 * 65.31697 * 15 14 13 37 37 H 1.09005 * 109.46025 * 301.35928 * 16 15 14 38 38 H 0.97000 * 120.00012 * 334.97724 * 17 16 15 39 39 H 1.08997 * 109.64881 * 110.81750 * 21 20 18 40 40 H 1.09009 * 109.72778 * 350.25503 * 21 20 18 41 41 H 1.08998 * 109.51542 * 187.82138 * 22 21 20 42 42 H 1.08995 * 109.51221 * 67.71988 * 22 21 20 43 43 H 1.09000 * 109.51495 * 57.34383 * 24 23 22 44 44 H 1.08998 * 109.51296 * 177.44556 * 24 23 22 45 45 H 1.09002 * 109.67980 * 9.71325 * 25 20 18 46 46 H 1.09001 * 109.68281 * 249.16241 * 25 20 18 47 47 H 1.09004 * 109.50212 * 58.58100 * 26 16 15 48 48 H 1.08997 * 109.49887 * 178.67797 * 26 16 15 49 49 H 1.08990 * 109.59499 * 246.16038 * 27 13 11 50 50 H 1.09005 * 109.58202 * 6.45165 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9671 -0.0006 13 7 2.1654 -6.1344 0.0026 14 6 1.4447 -7.4149 0.0015 15 6 1.9503 -8.2661 1.1704 16 6 3.4719 -8.4012 1.0773 17 7 3.9553 -9.2423 2.1750 18 6 5.1166 -9.9144 2.0480 19 8 5.8076 -9.7528 1.0608 20 7 5.5119 -10.7655 3.0153 21 6 4.7522 -10.8914 4.2694 22 6 5.7296 -10.7541 5.4424 23 8 6.8143 -11.6675 5.2618 24 6 7.5975 -11.4221 4.0913 25 6 6.7161 -11.5948 2.8489 26 6 4.1152 -7.0161 1.1748 27 6 3.6345 -6.1507 0.0054 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.8710 -3.6040 0.8923 32 1 2.8724 -3.6048 -0.8877 33 1 1.6289 -7.9370 -0.9374 34 1 0.3758 -7.2350 0.1159 35 1 1.4938 -9.2549 1.1245 36 1 1.6846 -7.7857 2.1121 37 1 3.7381 -8.8591 0.1246 38 1 3.4396 -9.3156 2.9933 39 1 4.2673 -11.8668 4.3078 40 1 3.9999 -10.1044 4.3244 41 1 5.2134 -10.9817 6.3750 42 1 6.1141 -9.7348 5.4785 43 1 7.9888 -10.4052 4.1215 44 1 8.4256 -12.1297 4.0523 45 1 7.2636 -11.2735 1.9628 46 1 6.4296 -12.6413 2.7446 47 1 3.8291 -6.5475 2.1164 48 1 5.1999 -7.1150 1.1320 49 1 3.9972 -6.5699 -0.9330 50 1 4.0109 -5.1343 0.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348730604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:27 Heat of formation + Delta-G solvation = -105.565041 kcal Electronic energy + Delta-G solvation = -29875.196468 eV Core-core repulsion = 25709.542134 eV Total energy + Delta-G solvation = -4165.654335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03305 -39.90170 -38.91870 -37.32097 -35.19348 -34.74055 -33.52616 -32.18929 -31.69667 -30.93633 -30.50810 -28.19615 -26.08858 -24.91797 -24.35295 -23.44750 -22.66301 -21.67781 -20.70267 -20.12722 -18.95138 -18.34368 -17.28355 -16.95346 -16.51299 -16.24913 -15.90780 -15.67448 -15.50525 -15.42373 -15.21699 -15.01899 -14.52313 -14.43494 -14.31555 -13.98269 -13.72481 -13.25199 -13.10774 -13.00553 -12.50779 -12.40185 -12.13284 -12.09813 -11.99797 -11.85780 -11.41290 -11.32207 -11.26994 -11.05504 -10.93000 -10.81097 -10.70943 -10.58214 -10.41400 -9.95885 -9.64074 -9.43284 -9.17682 -9.00001 -8.93023 -8.47322 -8.31245 -5.95976 -4.00274 2.09212 2.80771 3.18565 3.24431 3.24876 3.33408 3.39441 3.40481 3.42403 4.15604 4.38302 4.39563 4.46945 4.48785 4.53184 4.62071 4.70066 4.83408 4.89472 4.96712 5.05468 5.12668 5.14849 5.18302 5.20326 5.35881 5.38938 5.40083 5.47178 5.56115 5.67285 5.77134 5.82296 5.86162 5.96844 6.05652 6.19646 6.21841 6.22513 6.46139 6.52491 6.71726 6.90518 7.49982 7.72741 7.74729 7.86331 8.07237 8.19618 8.38625 8.73099 9.08128 9.63181 11.14940 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.001988 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.535120 B =14077.624436 C =14786.345548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.534 6.534 13 N -0.627 5.627 14 C 0.116 3.884 15 C -0.140 4.140 16 C 0.165 3.835 17 N -0.740 5.740 18 C 0.710 3.290 19 O -0.584 6.584 20 N -0.636 5.636 21 C 0.077 3.923 22 C 0.047 3.953 23 O -0.379 6.379 24 C 0.046 3.954 25 C 0.095 3.905 26 C -0.145 4.145 27 C 0.113 3.887 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.394 0.606 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.691 -27.366 9.506 31.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.305 3.695 12 O -0.409 6.409 13 N -0.363 5.363 14 C -0.008 4.008 15 C -0.179 4.179 16 C 0.060 3.940 17 N -0.396 5.396 18 C 0.412 3.588 19 O -0.461 6.461 20 N -0.375 5.375 21 C -0.047 4.047 22 C -0.030 4.030 23 O -0.297 6.297 24 C -0.031 4.031 25 C -0.028 4.028 26 C -0.184 4.184 27 C -0.011 4.011 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.392 -27.259 8.873 31.231 hybrid contribution 0.188 1.017 0.340 1.088 sum 12.580 -26.242 9.212 30.525 Atomic orbital electron populations 1.70001 1.06042 1.26559 1.50224 1.25030 0.94836 0.99229 0.95332 0.86590 0.79758 0.83516 0.78080 1.20662 1.21237 1.19904 1.21219 0.92915 0.91008 1.51334 0.92621 1.18907 0.93175 0.89388 0.98585 1.21887 1.00732 0.91961 1.02299 1.21587 0.88385 0.85475 0.74092 1.90654 1.14407 1.87159 1.48729 1.48346 1.06497 1.05802 1.75672 1.21386 0.98743 0.83836 0.96844 1.22217 0.94144 1.00883 1.00660 1.20870 0.93022 0.90040 0.90082 1.45429 1.23305 1.50641 1.20248 1.15801 0.81676 0.78551 0.82793 1.90931 1.55092 1.68986 1.31139 1.47284 1.29276 1.43708 1.17237 1.22340 0.94900 1.03129 0.84351 1.22970 0.88148 0.93986 0.97941 1.87977 1.43135 1.54780 1.43857 1.23043 0.93525 1.02175 0.84388 1.22169 0.85895 0.94782 0.99966 1.22343 1.01417 0.95040 0.99633 1.21658 0.79861 1.01721 0.97896 0.92967 0.95823 0.95880 0.90293 0.90224 0.91739 0.88486 0.90372 0.90867 0.89235 0.77008 0.90300 0.89474 0.87455 0.92412 0.92432 0.87446 0.87743 0.90830 0.91240 0.90131 0.91363 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.63 3.98 -27.88 -0.11 -2.74 16 11 C 0.51 9.95 7.70 -10.98 -0.08 9.86 16 12 O -0.53 -12.50 15.40 5.56 0.09 -12.42 16 13 N -0.63 -9.02 2.97 -172.76 -0.51 -9.54 16 14 C 0.12 1.38 6.43 -3.71 -0.02 1.36 16 15 C -0.14 -1.26 5.55 -26.61 -0.15 -1.41 16 16 C 0.16 1.56 2.38 -67.89 -0.16 1.40 16 17 N -0.74 -6.15 4.99 -58.64 -0.29 -6.44 16 18 C 0.71 7.35 8.27 -86.93 -0.72 6.63 16 19 O -0.58 -8.23 15.48 5.29 0.08 -8.15 16 20 N -0.64 -4.94 3.02 -177.98 -0.54 -5.47 16 21 C 0.08 0.37 6.57 -3.52 -0.02 0.35 16 22 C 0.05 0.24 6.98 37.31 0.26 0.50 16 23 O -0.38 -2.68 10.74 -35.23 -0.38 -3.06 16 24 C 0.05 0.27 6.99 37.31 0.26 0.53 16 25 C 0.10 0.66 6.65 -3.53 -0.02 0.63 16 26 C -0.14 -1.50 5.65 -26.60 -0.15 -1.65 16 27 C 0.11 1.31 6.34 -3.70 -0.02 1.29 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 32 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.33 7.01 -51.93 -0.36 0.97 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 38 H 0.39 2.34 6.16 -40.82 -0.25 2.09 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.29 5.78 -51.92 -0.30 -0.01 16 41 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.84 7.06 -51.93 -0.37 0.47 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 1.14 5.93 -51.93 -0.31 0.83 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -37.14 394.19 -9.63 -46.77 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.25 Total: -1.54 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.48 Total: 3.94 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.61 Total: -48.16 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.21 Total: -23.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.14 -9.63 -46.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348730604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.794 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds