Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48496 * 109.47002 * 269.99715 * 3 2 1 5 5 H 1.48499 * 109.46987 * 29.99847 * 3 2 1 6 6 H 1.48498 * 109.46830 * 150.00042 * 3 2 1 7 7 C 1.37879 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47051 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00118 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99665 * 180.02562 * 11 10 9 14 14 C 1.46929 * 120.62925 * 180.02562 * 13 11 10 15 15 C 1.53189 * 108.77201 * 233.62878 * 14 13 11 16 16 C 1.53041 * 109.31283 * 305.36057 * 15 14 13 17 17 N 1.46501 * 109.46151 * 181.38748 * 16 15 14 18 18 C 1.34776 * 120.00193 * 154.96964 * 17 16 15 19 19 O 1.21585 * 119.99541 * 4.97292 * 18 17 16 20 20 N 1.34766 * 120.00211 * 184.96857 * 18 17 16 21 21 C 1.47168 * 120.94467 * 354.72364 * 20 18 17 22 22 C 1.53300 * 108.37665 * 230.51527 * 21 20 18 23 23 O 1.42955 * 109.26383 * 307.77025 * 22 21 20 24 24 C 1.42963 * 114.16753 * 62.55533 * 23 22 21 25 25 C 1.47156 * 120.98374 * 174.78341 * 20 18 17 26 26 C 1.53032 * 109.52515 * 61.37530 * 16 15 14 27 27 C 1.46922 * 120.63405 * 0.02562 * 13 11 10 28 28 H 0.97003 * 120.00030 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47290 * 60.00453 * 9 7 2 30 30 H 1.08996 * 109.47390 * 299.99878 * 9 7 2 31 31 H 1.09003 * 109.46741 * 60.00071 * 10 9 7 32 32 H 1.08996 * 109.46886 * 300.00140 * 10 9 7 33 33 H 1.09001 * 109.58905 * 113.83704 * 14 13 11 34 34 H 1.09001 * 109.70134 * 353.48392 * 14 13 11 35 35 H 1.09004 * 109.49500 * 185.41223 * 15 14 13 36 36 H 1.09000 * 109.50129 * 65.31697 * 15 14 13 37 37 H 1.09005 * 109.46025 * 301.35928 * 16 15 14 38 38 H 0.97000 * 120.00012 * 334.97724 * 17 16 15 39 39 H 1.08997 * 109.64881 * 110.81750 * 21 20 18 40 40 H 1.09009 * 109.72778 * 350.25503 * 21 20 18 41 41 H 1.08998 * 109.51542 * 187.82138 * 22 21 20 42 42 H 1.08995 * 109.51221 * 67.71988 * 22 21 20 43 43 H 1.09000 * 109.51495 * 57.34383 * 24 23 22 44 44 H 1.08998 * 109.51296 * 177.44556 * 24 23 22 45 45 H 1.09002 * 109.67980 * 9.71325 * 25 20 18 46 46 H 1.09001 * 109.68281 * 249.16241 * 25 20 18 47 47 H 1.09004 * 109.50212 * 58.58100 * 26 16 15 48 48 H 1.08997 * 109.49887 * 178.67797 * 26 16 15 49 49 H 1.08990 * 109.59499 * 246.16038 * 27 13 11 50 50 H 1.09005 * 109.58202 * 6.45165 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9671 -0.0006 13 7 2.1654 -6.1344 0.0026 14 6 1.4447 -7.4149 0.0015 15 6 1.9503 -8.2661 1.1704 16 6 3.4719 -8.4012 1.0773 17 7 3.9553 -9.2423 2.1750 18 6 5.1166 -9.9144 2.0480 19 8 5.8076 -9.7528 1.0608 20 7 5.5119 -10.7655 3.0153 21 6 4.7522 -10.8914 4.2694 22 6 5.7296 -10.7541 5.4424 23 8 6.8143 -11.6675 5.2618 24 6 7.5975 -11.4221 4.0913 25 6 6.7161 -11.5948 2.8489 26 6 4.1152 -7.0161 1.1748 27 6 3.6345 -6.1507 0.0054 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8902 31 1 2.8710 -3.6040 0.8923 32 1 2.8724 -3.6048 -0.8877 33 1 1.6289 -7.9370 -0.9374 34 1 0.3758 -7.2350 0.1159 35 1 1.4938 -9.2549 1.1245 36 1 1.6846 -7.7857 2.1121 37 1 3.7381 -8.8591 0.1246 38 1 3.4396 -9.3156 2.9933 39 1 4.2673 -11.8668 4.3078 40 1 3.9999 -10.1044 4.3244 41 1 5.2134 -10.9817 6.3750 42 1 6.1141 -9.7348 5.4785 43 1 7.9888 -10.4052 4.1215 44 1 8.4256 -12.1297 4.0523 45 1 7.2636 -11.2735 1.9628 46 1 6.4296 -12.6413 2.7446 47 1 3.8291 -6.5475 2.1164 48 1 5.1999 -7.1150 1.1320 49 1 3.9972 -6.5699 -0.9330 50 1 4.0109 -5.1343 0.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348730604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = -132.305271 kcal Electronic energy + Delta-G solvation = -29876.356012 eV Core-core repulsion = 25709.542134 eV Total energy + Delta-G solvation = -4166.813878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76331 -41.07426 -39.64611 -38.43645 -35.89959 -35.67543 -35.60520 -33.38155 -32.61976 -31.96625 -31.75534 -28.81755 -27.86741 -25.90527 -25.03009 -24.49492 -23.62643 -22.97071 -21.79017 -20.84484 -19.98540 -19.28413 -18.83176 -17.91381 -17.54028 -17.04092 -16.86659 -16.73787 -16.60129 -16.41707 -16.26245 -16.04211 -15.63424 -15.26121 -15.18765 -15.06202 -14.78624 -14.36579 -14.28031 -14.18930 -13.68336 -13.55962 -13.37048 -13.17020 -12.98289 -12.81760 -12.72851 -12.48678 -12.37327 -12.28062 -12.09388 -11.93141 -11.79631 -11.68955 -11.55621 -11.31241 -11.29968 -11.13795 -10.68106 -10.56673 -10.22310 -9.69334 -9.50420 -8.17885 -6.31763 1.42018 1.44568 1.44740 1.55527 1.69405 2.02502 2.04789 2.43126 2.77245 2.85779 3.14946 3.57248 3.74181 3.76801 3.86143 3.95508 4.04790 4.07748 4.07925 4.10554 4.25958 4.29099 4.37964 4.41820 4.48543 4.51614 4.57949 4.64952 4.71071 4.75166 4.81606 4.82878 4.84696 4.91029 4.92655 5.02693 5.10776 5.20365 5.34904 5.47355 5.48525 5.62818 5.63130 5.82608 5.85281 6.09715 6.17786 6.37243 6.85482 6.86483 7.25766 7.38335 7.46454 8.94693 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.001988 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.535120 B =14077.624436 C =14786.345548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.613 5.613 14 C 0.109 3.891 15 C -0.125 4.125 16 C 0.171 3.829 17 N -0.728 5.728 18 C 0.705 3.295 19 O -0.626 6.626 20 N -0.635 5.635 21 C 0.075 3.925 22 C 0.044 3.956 23 O -0.395 6.395 24 C 0.051 3.949 25 C 0.093 3.907 26 C -0.136 4.136 27 C 0.108 3.892 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.017 1.017 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.407 0.593 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.129 0.871 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.741 -28.401 10.579 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.157 4.157 11 C 0.304 3.696 12 O -0.467 6.467 13 N -0.347 5.347 14 C -0.014 4.014 15 C -0.164 4.164 16 C 0.065 3.935 17 N -0.385 5.385 18 C 0.407 3.593 19 O -0.507 6.507 20 N -0.373 5.373 21 C -0.048 4.048 22 C -0.033 4.033 23 O -0.313 6.313 24 C -0.027 4.027 25 C -0.030 4.030 26 C -0.175 4.175 27 C -0.015 4.015 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.001 0.999 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.147 0.853 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.144 0.856 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.486 -28.361 9.993 33.378 hybrid contribution -0.440 1.234 0.020 1.310 sum 14.046 -27.127 10.014 32.148 Atomic orbital electron populations 1.70178 1.08252 1.27778 1.51453 1.26136 0.95748 1.03910 0.94681 0.85327 0.78673 0.77775 0.78509 1.19760 1.21129 1.17946 1.21702 0.93947 0.91613 1.50758 0.90703 1.18686 0.93655 0.92391 0.94690 1.21643 0.99343 0.90410 1.04331 1.21307 0.87594 0.86576 0.74165 1.90637 1.16453 1.87951 1.51663 1.48270 1.07750 1.05262 1.73369 1.21601 0.97568 0.82956 0.99234 1.22084 0.93728 1.01461 0.99122 1.20713 0.93062 0.89546 0.90162 1.45212 1.22868 1.49953 1.20480 1.15975 0.81753 0.78863 0.82730 1.90901 1.56409 1.70410 1.33009 1.47379 1.29550 1.42832 1.17574 1.22549 0.94976 1.04440 0.82825 1.23129 0.87793 0.93476 0.98904 1.87960 1.43785 1.55440 1.44115 1.23060 0.93663 1.02334 0.83615 1.22226 0.85818 0.95027 0.99912 1.22241 1.01137 0.95282 0.98874 1.21887 0.77779 1.02423 0.99423 0.92862 0.99987 0.99870 0.88057 0.88158 0.89897 0.90490 0.87853 0.90826 0.90204 0.75407 0.89167 0.87756 0.85301 0.92927 0.93189 0.85629 0.89279 0.89875 0.91237 0.90458 0.89747 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.30 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.44 4.26 29.85 0.13 2.56 16 10 C -0.12 -4.80 3.98 29.85 0.12 -4.68 16 11 C 0.51 20.11 7.70 87.66 0.67 20.78 16 12 O -0.59 -28.75 15.40 -3.03 -0.05 -28.79 16 13 N -0.61 -17.03 2.97 -818.87 -2.43 -19.47 16 14 C 0.11 2.47 6.43 86.36 0.56 3.03 16 15 C -0.13 -1.96 5.55 30.67 0.17 -1.79 16 16 C 0.17 2.86 2.38 45.02 0.11 2.97 16 17 N -0.73 -10.42 4.99 -457.70 -2.28 -12.70 16 18 C 0.71 13.53 8.27 179.06 1.48 15.01 16 19 O -0.63 -17.25 15.48 -3.98 -0.06 -17.31 16 20 N -0.64 -8.79 3.02 -835.28 -2.52 -11.32 16 21 C 0.07 0.54 6.57 86.35 0.57 1.10 16 22 C 0.04 0.34 6.98 72.08 0.50 0.84 16 23 O -0.39 -4.83 10.74 -148.98 -1.60 -6.43 16 24 C 0.05 0.53 6.99 72.08 0.50 1.03 16 25 C 0.09 1.19 6.65 86.35 0.57 1.76 16 26 C -0.14 -2.55 5.65 30.68 0.17 -2.38 16 27 C 0.11 2.30 6.34 86.37 0.55 2.85 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 30 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 31 H 0.10 3.66 7.69 -2.39 -0.02 3.64 16 32 H 0.10 3.66 7.94 -2.39 -0.02 3.64 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.12 7.01 -2.39 -0.02 2.10 16 35 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.58 7.65 -2.38 -0.02 1.56 16 38 H 0.41 3.62 6.16 -92.71 -0.57 3.05 16 39 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.10 0.36 5.78 -2.38 -0.01 0.35 16 41 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.42 7.06 -2.39 -0.02 1.41 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 49 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.10 2.08 5.93 -2.38 -0.01 2.07 16 Total: -1.00 -84.48 394.19 0.53 -83.95 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.37 Total: 12.54 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.80 Total: 12.35 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.95 Total: -102.78 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.71 Total: -52.54 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -84.48 0.53 -83.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348730604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.354 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds