Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47373 * 300.00097 * 3 2 1 6 6 H 1.48498 * 109.47465 * 60.00327 * 3 2 1 7 7 C 1.38803 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00030 * 197.37510 * 7 2 1 9 9 N 1.36937 * 120.00530 * 17.36290 * 7 2 1 10 10 C 1.46935 * 120.62533 * 27.68794 * 9 7 2 11 11 C 1.53192 * 108.77544 * 126.37007 * 10 9 7 12 12 C 1.53043 * 109.33757 * 54.61788 * 11 10 9 13 13 N 1.46498 * 109.45696 * 178.63198 * 12 11 10 14 14 C 1.34780 * 120.00186 * 205.00116 * 13 12 11 15 15 O 1.21587 * 119.99553 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00237 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99880 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47087 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.46977 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.32997 * 54.30529 * 20 19 18 22 22 C 1.54501 * 110.36439 * 176.53641 * 20 19 18 23 23 C 1.54783 * 102.04587 * 134.12822 * 22 20 19 24 24 O 1.45830 * 104.49614 * 333.26355 * 23 22 20 25 25 C 1.34069 * 109.90891 * 30.54293 * 24 23 22 26 26 O 1.20819 * 125.09938 * 159.17203 * 25 24 23 27 27 C 1.53034 * 109.54096 * 298.68118 * 12 11 10 28 28 C 1.46930 * 120.63595 * 207.66636 * 9 7 2 29 29 H 0.97006 * 120.00073 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58626 * 6.57895 * 10 9 7 31 31 H 1.09003 * 109.58247 * 246.15680 * 10 9 7 32 32 H 1.08992 * 109.49723 * 174.58324 * 11 10 9 33 33 H 1.09006 * 109.49561 * 294.65338 * 11 10 9 34 34 H 1.08996 * 109.45980 * 58.67553 * 12 11 10 35 35 H 0.97002 * 120.00408 * 24.99990 * 13 12 11 36 36 H 0.97002 * 120.00219 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.47517 * 300.00556 * 17 16 14 38 38 H 1.08999 * 109.46822 * 60.00332 * 17 16 14 39 39 H 1.08998 * 109.47246 * 300.00538 * 18 17 16 40 40 H 1.08999 * 109.47169 * 60.00360 * 18 17 16 41 41 H 1.08998 * 109.47149 * 300.00240 * 19 18 17 42 42 H 1.08999 * 109.47037 * 59.99923 * 19 18 17 43 43 H 1.08994 * 110.86833 * 252.34648 * 22 20 19 44 44 H 1.08993 * 110.86760 * 16.02494 * 22 20 19 45 45 H 1.08993 * 110.46887 * 214.47632 * 23 22 20 46 46 H 1.09002 * 110.46401 * 92.04356 * 23 22 20 47 47 H 1.09000 * 109.47549 * 301.37196 * 27 12 11 48 48 H 1.09003 * 109.52621 * 181.30107 * 27 12 11 49 49 H 1.08991 * 109.58471 * 353.41614 * 28 9 7 50 50 H 1.08999 * 109.58560 * 113.84495 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3725 -2.3609 -0.3549 10 6 0.2281 -2.3338 -1.2762 11 6 0.5017 -3.3027 -2.4309 12 6 0.8204 -4.6884 -1.8649 13 7 1.0505 -5.6249 -2.9678 14 6 0.8510 -6.9450 -2.7837 15 8 0.4805 -7.3588 -1.7021 16 7 1.0621 -7.8065 -3.7985 17 6 0.8457 -9.2415 -3.5981 18 6 1.1549 -9.9900 -4.8962 19 6 0.9284 -11.4887 -4.6872 20 6 1.2370 -12.2370 -5.9854 21 1 2.2402 -11.9922 -6.3344 22 6 1.0986 -13.7611 -5.7734 23 6 0.2835 -14.1878 -7.0181 24 8 -0.4748 -12.9970 -7.3836 25 6 0.2126 -11.8965 -7.0460 26 8 0.0401 -10.7977 -7.5176 27 6 2.0754 -4.6089 -0.9927 28 6 1.8197 -3.6549 0.1783 29 1 -0.4850 0.8401 0.0004 30 1 0.0985 -1.3251 -1.6684 31 1 -0.6741 -2.6412 -0.7472 32 1 -0.3789 -3.3646 -3.0702 33 1 1.3501 -2.9438 -3.0137 34 1 -0.0186 -5.0364 -1.2624 35 1 1.3463 -5.2948 -3.8307 36 1 1.3580 -7.4764 -4.6613 37 1 1.5030 -9.6010 -2.8064 38 1 -0.1924 -9.4165 -3.3158 39 1 0.4980 -9.6306 -5.6882 40 1 2.1932 -9.8150 -5.1780 41 1 1.5851 -11.8484 -3.8951 42 1 -0.1100 -11.6633 -4.4055 43 1 2.0766 -14.2422 -5.7640 44 1 0.5496 -13.9774 -4.8570 45 1 -0.3909 -15.0071 -6.7696 46 1 0.9509 -14.4780 -7.8296 47 1 2.9092 -4.2379 -1.5887 48 1 2.3154 -5.6003 -0.6085 49 1 2.7401 -3.5178 0.7457 50 1 1.0472 -4.0699 0.8258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348883664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -104.920969 kcal Electronic energy + Delta-G solvation = -28995.757306 eV Core-core repulsion = 24830.130901 eV Total energy + Delta-G solvation = -4165.626406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58854 -39.88828 -37.96497 -37.56271 -36.41643 -34.53751 -34.23166 -32.29135 -31.57001 -30.06181 -29.40116 -28.50354 -25.58943 -24.62311 -23.15918 -22.35451 -22.11072 -21.71440 -21.02218 -20.40763 -19.35536 -18.04772 -17.95683 -17.43458 -16.80053 -16.55147 -16.04766 -15.94140 -14.95514 -14.91512 -14.59910 -14.40433 -14.31372 -14.15171 -13.87212 -13.65307 -13.48455 -13.31121 -12.97906 -12.90492 -12.72619 -12.46417 -12.28319 -12.05267 -11.81005 -11.53616 -11.40661 -11.34227 -11.13270 -11.08460 -10.79638 -10.70287 -10.43140 -10.37949 -10.21620 -9.99651 -9.95247 -9.69850 -9.48891 -9.10162 -8.54087 -8.38975 -6.65255 -5.76443 -3.17875 1.57027 2.69977 2.85558 3.34431 3.38921 3.44847 3.46877 3.49218 3.61052 3.87267 4.13882 4.38910 4.41773 4.49099 4.52288 4.69599 4.76591 4.89496 4.97539 5.03542 5.15808 5.24847 5.33974 5.38112 5.45657 5.50690 5.56293 5.67007 5.80688 5.87931 5.96233 6.13965 6.21621 6.34671 6.42362 6.49919 6.56207 6.63375 6.67370 6.85355 6.97186 6.98733 7.04419 7.18456 7.36935 7.66299 7.82586 8.22575 8.47633 8.83338 9.23970 9.87571 10.44656 11.32484 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.001565 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.970776 B =17887.699682 C =18182.521252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.593 6.593 16 N -0.753 5.753 17 C 0.142 3.858 18 C -0.143 4.143 19 C -0.098 4.098 20 C -0.153 4.153 21 H 0.118 0.882 22 C -0.154 4.154 23 C 0.052 3.948 24 O -0.348 6.348 25 C 0.483 3.517 26 O -0.446 6.446 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.391 0.609 36 H 0.394 0.606 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -30.036 -15.281 33.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.401 3.599 15 O -0.471 6.471 16 N -0.409 5.409 17 C 0.017 3.983 18 C -0.180 4.180 19 C -0.136 4.136 20 C -0.173 4.173 21 H 0.135 0.865 22 C -0.191 4.191 23 C -0.022 4.022 24 O -0.265 6.265 25 C 0.323 3.677 26 O -0.329 6.329 27 C -0.179 4.179 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.228 0.772 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.130 0.870 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.961 -29.750 -14.559 33.254 hybrid contribution 0.834 1.024 -0.839 1.565 sum 3.795 -28.726 -15.398 32.813 Atomic orbital electron populations 1.70043 1.05240 1.25366 1.54124 1.25037 0.95281 0.98401 1.01044 0.86233 0.79358 0.84005 0.77242 1.20293 1.21612 1.21757 1.19241 0.92756 0.84855 1.41137 0.91602 1.44111 1.35797 1.01500 1.50166 1.20755 0.88887 0.98035 0.87569 1.22540 1.00480 0.94724 1.00870 1.20896 0.98283 0.87749 0.86591 1.45544 1.72793 1.04938 1.16018 1.16021 0.78520 0.81341 0.84030 1.90912 1.53674 1.77625 1.24867 1.45124 1.74815 1.06876 1.14124 1.21076 1.01481 0.78908 0.96802 1.21949 1.03266 0.94457 0.98358 1.21370 1.03184 0.94402 0.94666 1.22609 1.01103 0.96630 0.96965 0.86451 1.23125 1.02559 0.94078 0.99364 1.24191 0.95103 0.85859 0.97067 1.87057 1.45068 1.16951 1.77419 1.23135 0.79943 0.83917 0.80726 1.90721 1.65629 1.21321 1.55215 1.22389 0.97281 0.99457 0.98815 1.20881 0.97819 0.86519 0.92735 0.93684 0.88998 0.96085 0.92775 0.92254 0.90132 0.77634 0.77227 0.91806 0.91871 0.89726 0.90981 0.89658 0.90797 0.88234 0.88721 0.87005 0.89558 0.92509 0.92744 0.92626 0.96151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -15.08 3.00 -172.31 -0.52 -15.60 16 10 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 11 C -0.15 -2.77 5.55 -26.61 -0.15 -2.91 16 12 C 0.17 3.09 2.42 -67.89 -0.16 2.92 16 13 N -0.74 -11.08 5.08 -58.64 -0.30 -11.37 16 14 C 0.70 11.09 8.53 -86.92 -0.74 10.35 16 15 O -0.59 -11.91 16.01 5.29 0.08 -11.82 16 16 N -0.75 -8.62 5.56 -65.22 -0.36 -8.98 16 17 C 0.14 1.40 5.67 -4.04 -0.02 1.38 16 18 C -0.14 -0.99 5.13 -26.73 -0.14 -1.13 16 19 C -0.10 -0.48 4.55 -26.73 -0.12 -0.60 16 20 C -0.15 -0.63 3.01 -90.68 -0.27 -0.90 16 21 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 22 C -0.15 -0.22 6.81 -25.00 -0.17 -0.39 16 23 C 0.05 0.12 7.91 38.10 0.30 0.42 16 24 O -0.35 -2.57 11.05 -38.49 -0.43 -2.99 16 25 C 0.48 3.90 7.76 36.31 0.28 4.18 16 26 O -0.45 -5.27 16.09 -18.40 -0.30 -5.57 16 27 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 28 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.09 2.44 6.03 -51.93 -0.31 2.12 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 35 H 0.39 4.71 8.62 -40.82 -0.35 4.36 16 36 H 0.39 3.48 8.49 -40.82 -0.35 3.13 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.74 6.20 -51.93 -0.32 0.42 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.09 0.10 7.81 -51.93 -0.41 -0.31 16 45 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 46 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -36.04 399.17 -10.26 -46.30 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.43 Total: 2.26 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -1.62 Total: 10.76 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.56 Total: -61.69 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.64 Total: -20.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.04 -10.26 -46.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348883664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.617 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds