Wall clock time and date at job start Sat Apr 11 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99841 * 2 1 4 4 H 1.48501 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47373 * 300.00097 * 3 2 1 6 6 H 1.48498 * 109.47465 * 60.00327 * 3 2 1 7 7 C 1.38803 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00030 * 197.37510 * 7 2 1 9 9 N 1.36937 * 120.00530 * 17.36290 * 7 2 1 10 10 C 1.46935 * 120.62533 * 27.68794 * 9 7 2 11 11 C 1.53192 * 108.77544 * 126.37007 * 10 9 7 12 12 C 1.53043 * 109.33757 * 54.61788 * 11 10 9 13 13 N 1.46498 * 109.45696 * 178.63198 * 12 11 10 14 14 C 1.34780 * 120.00186 * 205.00116 * 13 12 11 15 15 O 1.21587 * 119.99553 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00237 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99880 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47087 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47239 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.46977 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.32997 * 54.30529 * 20 19 18 22 22 C 1.54501 * 110.36439 * 176.53641 * 20 19 18 23 23 C 1.54783 * 102.04587 * 134.12822 * 22 20 19 24 24 O 1.45830 * 104.49614 * 333.26355 * 23 22 20 25 25 C 1.34069 * 109.90891 * 30.54293 * 24 23 22 26 26 O 1.20819 * 125.09938 * 159.17203 * 25 24 23 27 27 C 1.53034 * 109.54096 * 298.68118 * 12 11 10 28 28 C 1.46930 * 120.63595 * 207.66636 * 9 7 2 29 29 H 0.97006 * 120.00073 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58626 * 6.57895 * 10 9 7 31 31 H 1.09003 * 109.58247 * 246.15680 * 10 9 7 32 32 H 1.08992 * 109.49723 * 174.58324 * 11 10 9 33 33 H 1.09006 * 109.49561 * 294.65338 * 11 10 9 34 34 H 1.08996 * 109.45980 * 58.67553 * 12 11 10 35 35 H 0.97002 * 120.00408 * 24.99990 * 13 12 11 36 36 H 0.97002 * 120.00219 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.47517 * 300.00556 * 17 16 14 38 38 H 1.08999 * 109.46822 * 60.00332 * 17 16 14 39 39 H 1.08998 * 109.47246 * 300.00538 * 18 17 16 40 40 H 1.08999 * 109.47169 * 60.00360 * 18 17 16 41 41 H 1.08998 * 109.47149 * 300.00240 * 19 18 17 42 42 H 1.08999 * 109.47037 * 59.99923 * 19 18 17 43 43 H 1.08994 * 110.86833 * 252.34648 * 22 20 19 44 44 H 1.08993 * 110.86760 * 16.02494 * 22 20 19 45 45 H 1.08993 * 110.46887 * 214.47632 * 23 22 20 46 46 H 1.09002 * 110.46401 * 92.04356 * 23 22 20 47 47 H 1.09000 * 109.47549 * 301.37196 * 27 12 11 48 48 H 1.09003 * 109.52621 * 181.30107 * 27 12 11 49 49 H 1.08991 * 109.58471 * 353.41614 * 28 9 7 50 50 H 1.08999 * 109.58560 * 113.84495 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3725 -2.3609 -0.3549 10 6 0.2281 -2.3338 -1.2762 11 6 0.5017 -3.3027 -2.4309 12 6 0.8204 -4.6884 -1.8649 13 7 1.0505 -5.6249 -2.9678 14 6 0.8510 -6.9450 -2.7837 15 8 0.4805 -7.3588 -1.7021 16 7 1.0621 -7.8065 -3.7985 17 6 0.8457 -9.2415 -3.5981 18 6 1.1549 -9.9900 -4.8962 19 6 0.9284 -11.4887 -4.6872 20 6 1.2370 -12.2370 -5.9854 21 1 2.2402 -11.9922 -6.3344 22 6 1.0986 -13.7611 -5.7734 23 6 0.2835 -14.1878 -7.0181 24 8 -0.4748 -12.9970 -7.3836 25 6 0.2126 -11.8965 -7.0460 26 8 0.0401 -10.7977 -7.5176 27 6 2.0754 -4.6089 -0.9927 28 6 1.8197 -3.6549 0.1783 29 1 -0.4850 0.8401 0.0004 30 1 0.0985 -1.3251 -1.6684 31 1 -0.6741 -2.6412 -0.7472 32 1 -0.3789 -3.3646 -3.0702 33 1 1.3501 -2.9438 -3.0137 34 1 -0.0186 -5.0364 -1.2624 35 1 1.3463 -5.2948 -3.8307 36 1 1.3580 -7.4764 -4.6613 37 1 1.5030 -9.6010 -2.8064 38 1 -0.1924 -9.4165 -3.3158 39 1 0.4980 -9.6306 -5.6882 40 1 2.1932 -9.8150 -5.1780 41 1 1.5851 -11.8484 -3.8951 42 1 -0.1100 -11.6633 -4.4055 43 1 2.0766 -14.2422 -5.7640 44 1 0.5496 -13.9774 -4.8570 45 1 -0.3909 -15.0071 -6.7696 46 1 0.9509 -14.4780 -7.8296 47 1 2.9092 -4.2379 -1.5887 48 1 2.3154 -5.6003 -0.6085 49 1 2.7401 -3.5178 0.7457 50 1 1.0472 -4.0699 0.8258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348883664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:32 Heat of formation + Delta-G solvation = -129.797341 kcal Electronic energy + Delta-G solvation = -28996.836027 eV Core-core repulsion = 24830.130901 eV Total energy + Delta-G solvation = -4166.705126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03694 -41.17459 -39.16277 -38.54952 -37.21264 -35.94981 -35.24178 -33.90967 -32.44890 -31.70164 -31.00555 -29.12933 -26.98938 -25.80299 -23.97048 -23.64193 -23.43974 -22.58281 -21.88881 -21.30791 -21.00985 -19.33087 -18.57953 -18.39887 -17.95483 -17.52376 -16.94992 -16.79560 -16.72203 -15.89102 -15.79975 -15.51444 -15.34824 -15.18610 -14.90883 -14.80819 -14.76960 -14.45640 -14.23550 -14.02012 -13.82439 -13.37575 -13.18573 -13.01971 -12.99658 -12.62136 -12.54040 -12.50908 -12.27970 -12.21646 -12.02565 -11.98887 -11.86827 -11.84282 -11.55523 -11.41101 -11.37490 -11.18600 -10.90372 -10.56239 -10.30206 -9.72100 -8.71326 -7.87391 -5.32626 1.02989 1.48012 1.49876 1.60832 1.72916 2.18208 2.33597 2.52460 2.97101 3.24936 3.32242 3.43280 3.61466 3.67215 3.90355 3.97371 4.02871 4.07061 4.11821 4.27981 4.35071 4.44196 4.46866 4.50408 4.65889 4.66857 4.72310 4.74023 4.81603 4.85785 4.91265 4.98970 5.02813 5.07443 5.09613 5.16406 5.23350 5.27988 5.30792 5.47175 5.53608 5.61549 5.65073 5.70252 5.82365 6.05596 6.39184 6.44012 7.13858 7.14573 7.62141 7.84214 8.37410 9.20007 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037376 B = 0.001565 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.970776 B =17887.699682 C =18182.521252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.181 3.819 13 N -0.728 5.728 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.736 5.736 17 C 0.141 3.859 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.144 4.144 21 H 0.134 0.866 22 C -0.143 4.143 23 C 0.043 3.957 24 O -0.377 6.377 25 C 0.476 3.524 26 O -0.498 6.498 27 C -0.122 4.122 28 C 0.144 3.856 29 H 0.250 0.750 30 H 0.064 0.936 31 H -0.006 1.006 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.410 0.590 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.130 0.870 46 H 0.103 0.897 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -32.030 -16.541 36.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.075 3.925 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.519 6.519 16 N -0.392 5.392 17 C 0.017 3.983 18 C -0.169 4.169 19 C -0.135 4.135 20 C -0.164 4.164 21 H 0.152 0.848 22 C -0.180 4.180 23 C -0.030 4.030 24 O -0.294 6.294 25 C 0.318 3.682 26 O -0.385 6.385 27 C -0.163 4.163 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.012 0.988 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.148 0.852 46 H 0.121 0.879 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 5.228 -31.811 -15.881 35.938 hybrid contribution 0.088 1.520 -0.424 1.581 sum 5.316 -30.291 -16.306 34.809 Atomic orbital electron populations 1.70201 1.06737 1.25872 1.55424 1.25813 0.96033 1.01557 1.01178 0.85177 0.78626 0.79682 0.76751 1.19016 1.21483 1.22125 1.19573 0.93066 0.85895 1.40727 0.91372 1.44358 1.35893 1.02059 1.50885 1.20574 0.87739 0.97809 0.88674 1.22257 1.01875 0.93655 0.98961 1.20487 0.96980 0.87874 0.87148 1.45149 1.72729 1.04395 1.15948 1.16183 0.78236 0.81657 0.84167 1.90887 1.55679 1.78368 1.26994 1.45028 1.73359 1.07089 1.13748 1.21205 1.00590 0.78052 0.98482 1.21858 1.03628 0.95523 0.95874 1.21396 1.03377 0.92949 0.95764 1.22615 1.00364 0.98472 0.94919 0.84797 1.23182 1.03984 0.91770 0.99075 1.24594 0.95694 0.84484 0.98207 1.87011 1.46396 1.18245 1.77719 1.23864 0.80106 0.83367 0.80833 1.90677 1.67412 1.23262 1.57106 1.22177 0.97818 0.98580 0.97705 1.20974 0.97356 0.85904 0.93946 0.94037 0.91738 0.98792 0.90738 0.91048 0.92809 0.75481 0.75392 0.91773 0.93469 0.91606 0.89447 0.87380 0.91582 0.85423 0.88029 0.85207 0.87921 0.91527 0.92340 0.92267 0.97523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 11.19 21.65 0.24 -55.66 16 2 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 3 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.26 -14.60 9.58 84.03 0.81 -13.79 16 8 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 9 N -0.61 -31.32 3.00 -699.06 -2.09 -33.41 16 10 C 0.18 8.74 5.31 86.36 0.46 9.20 16 11 C -0.13 -4.72 5.55 30.67 0.17 -4.55 16 12 C 0.18 6.47 2.42 45.02 0.11 6.58 16 13 N -0.73 -20.52 5.08 -457.70 -2.33 -22.84 16 14 C 0.70 21.27 8.53 179.06 1.53 22.79 16 15 O -0.64 -25.52 16.01 -3.99 -0.06 -25.58 16 16 N -0.74 -15.69 5.56 -478.53 -2.66 -18.35 16 17 C 0.14 2.61 5.67 86.38 0.49 3.10 16 18 C -0.13 -1.62 5.13 30.60 0.16 -1.46 16 19 C -0.10 -0.74 4.55 30.59 0.14 -0.60 16 20 C -0.14 -0.85 3.01 -10.83 -0.03 -0.88 16 21 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 22 C -0.14 0.07 6.81 31.71 0.22 0.29 16 23 C 0.04 0.10 7.91 72.59 0.57 0.67 16 24 O -0.38 -5.34 11.05 -50.21 -0.56 -5.90 16 25 C 0.48 7.49 7.76 71.44 0.55 8.05 16 26 O -0.50 -12.15 16.09 21.66 0.35 -11.80 16 27 C -0.12 -4.55 5.65 30.67 0.17 -4.38 16 28 C 0.14 6.43 6.52 86.36 0.56 6.99 16 29 H 0.25 14.42 8.31 -92.70 -0.77 13.64 16 30 H 0.06 3.51 6.03 -2.39 -0.01 3.50 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 35 H 0.41 8.72 8.62 -92.71 -0.80 7.92 16 36 H 0.41 6.31 8.49 -92.71 -0.79 5.52 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.12 6.20 -2.39 -0.01 1.11 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.13 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.10 -0.14 7.81 -2.39 -0.02 -0.16 16 45 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 50 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -81.50 399.17 0.61 -80.89 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.63 Total: 16.10 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 6.32 Total: 29.57 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -6.84 Total: -130.26 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.27 Total: -43.28 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -81.50 0.61 -80.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348883664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.905 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds