Wall clock time and date at job start Sat Apr 11 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99859 * 2 1 4 4 H 1.48501 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47468 * 300.00198 * 3 2 1 6 6 H 1.48508 * 109.46872 * 60.00340 * 3 2 1 7 7 C 1.37879 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47510 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46985 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99692 * 0.02562 * 12 11 10 14 14 N 1.34769 * 119.99760 * 179.97438 * 12 11 10 15 15 C 1.46964 * 120.59553 * 359.72225 * 14 12 11 16 16 C 1.53815 * 108.39625 * 124.75485 * 15 14 12 17 17 N 1.46973 * 108.57858 * 49.63932 * 16 15 14 18 18 C 1.34774 * 120.59020 * 124.66947 * 17 16 15 19 19 O 1.21592 * 119.99816 * 190.71378 * 18 17 16 20 20 N 1.34770 * 120.00760 * 10.71211 * 18 17 16 21 21 C 1.47158 * 120.98102 * 20.70357 * 20 18 17 22 22 C 1.53705 * 108.16191 * 129.43221 * 21 20 18 23 23 O 1.42959 * 109.14863 * 52.54104 * 22 21 20 24 24 C 1.42959 * 114.16640 * 297.28724 * 23 22 21 25 25 C 1.47155 * 120.98765 * 200.98550 * 20 18 17 26 26 C 1.46959 * 118.80835 * 304.64644 * 17 16 15 27 27 C 1.46973 * 120.59224 * 180.02562 * 14 12 11 28 28 H 0.96994 * 120.00352 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46775 * 59.99730 * 9 7 2 30 30 H 1.08998 * 109.47192 * 300.00330 * 9 7 2 31 31 H 1.09001 * 109.46844 * 59.99758 * 10 9 7 32 32 H 1.09001 * 109.46823 * 300.00598 * 10 9 7 33 33 H 1.09000 * 109.46882 * 299.99920 * 11 10 9 34 34 H 1.08994 * 109.46925 * 59.99902 * 11 10 9 35 35 H 1.09002 * 109.61232 * 244.53485 * 15 14 12 36 36 H 1.09000 * 109.61007 * 5.05180 * 15 14 12 37 37 H 1.09000 * 109.74488 * 289.84842 * 16 15 14 38 38 H 1.09010 * 109.67549 * 169.38394 * 16 15 14 39 39 H 1.08999 * 109.68049 * 249.21803 * 21 20 18 40 40 H 1.09007 * 109.67908 * 9.76450 * 21 20 18 41 41 H 1.08996 * 109.66186 * 292.57375 * 22 21 20 42 42 H 1.09006 * 109.48504 * 172.40418 * 22 21 20 43 43 H 1.09002 * 109.51372 * 302.65656 * 24 23 22 44 44 H 1.09003 * 109.55755 * 182.52858 * 24 23 22 45 45 H 1.09000 * 109.67653 * 350.23938 * 25 20 18 46 46 H 1.09008 * 109.67960 * 110.78608 * 25 20 18 47 47 H 1.09004 * 109.61092 * 295.47846 * 26 17 16 48 48 H 1.08999 * 109.74486 * 175.05917 * 26 17 16 49 49 H 1.08997 * 109.60554 * 354.94741 * 27 14 12 50 50 H 1.08998 * 109.60891 * 115.28909 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4597 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0019 14 7 2.0105 -7.4032 0.0006 15 6 0.5684 -7.6867 0.0063 16 6 0.2477 -8.5951 -1.1928 17 7 1.1911 -9.7220 -1.1922 18 6 0.7418 -10.9927 -1.1921 19 8 1.5146 -11.9107 -0.9958 20 7 -0.5639 -11.2459 -1.4096 21 6 -1.4254 -10.2591 -2.0801 22 6 -2.1731 -10.9711 -3.2187 23 8 -2.8248 -12.1320 -2.6979 24 6 -1.9330 -13.1145 -2.1658 25 6 -1.1717 -12.5147 -0.9782 26 6 2.6331 -9.4384 -1.1921 27 6 2.9539 -8.5301 0.0018 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8534 -5.0451 0.8897 34 1 0.8540 -5.0446 -0.8903 35 1 0.2985 -8.1918 0.9337 36 1 0.0118 -6.7536 -0.0805 37 1 0.3516 -8.0315 -2.1200 38 1 -0.7717 -8.9714 -1.1058 39 1 -2.1408 -9.8510 -1.3660 40 1 -0.8135 -9.4544 -2.4879 41 1 -1.4656 -11.2674 -3.9931 42 1 -2.9163 -10.2962 -3.6436 43 1 -1.2246 -13.4186 -2.9363 44 1 -2.5028 -13.9819 -1.8323 45 1 -0.3916 -13.2044 -0.6559 46 1 -1.8620 -12.3299 -0.1550 47 1 2.9070 -8.9348 -2.1192 48 1 3.1917 -10.3702 -1.1032 49 1 3.9730 -8.1540 -0.0879 50 1 2.8517 -9.0918 0.9303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349785364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:43 Heat of formation + Delta-G solvation = -64.229426 kcal Electronic energy + Delta-G solvation = -30275.858073 eV Core-core repulsion = 26111.996185 eV Total energy + Delta-G solvation = -4163.861888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44398 -39.94504 -38.88254 -37.23968 -35.52811 -34.29980 -34.16286 -32.47364 -31.95283 -31.25315 -29.12991 -28.11134 -26.94114 -25.39845 -24.25876 -23.71249 -23.01160 -21.70239 -20.74855 -20.01667 -18.98330 -17.69719 -17.22703 -16.72294 -16.51549 -16.40974 -16.18324 -16.06628 -15.84270 -15.64455 -15.46100 -14.88760 -14.57654 -14.43109 -14.39733 -14.24712 -13.71057 -13.51925 -13.32718 -12.83478 -12.54264 -12.34863 -12.17522 -12.12188 -11.90058 -11.80538 -11.60106 -11.53550 -11.40080 -11.13005 -10.85211 -10.72318 -10.60384 -10.53440 -10.31156 -9.72671 -9.71273 -9.52983 -9.30297 -9.04024 -8.98485 -8.49876 -8.35084 -6.00650 -4.01828 1.98596 2.59507 2.80801 2.86721 3.19694 3.28970 3.31759 3.39272 3.45038 4.10491 4.24675 4.36019 4.45094 4.48332 4.51507 4.60465 4.67808 4.73917 4.78188 4.86961 4.90666 5.01734 5.07410 5.09845 5.14595 5.22355 5.30891 5.35732 5.37326 5.40082 5.51195 5.60741 5.61469 5.68359 5.82458 6.09434 6.16075 6.33602 6.45291 6.56289 6.67682 6.88573 7.11692 7.31631 7.38524 7.67582 7.79640 7.99966 8.07307 8.31081 8.44125 9.05424 9.62391 11.10878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002088 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.828096 B =13404.218893 C =14598.051461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.623 5.623 15 C 0.094 3.906 16 C 0.061 3.939 17 N -0.625 5.625 18 C 0.717 3.283 19 O -0.583 6.583 20 N -0.639 5.639 21 C 0.058 3.942 22 C 0.046 3.954 23 O -0.380 6.380 24 C 0.048 3.952 25 C 0.097 3.903 26 C 0.117 3.883 27 C 0.098 3.902 28 H 0.259 0.741 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 -27.368 -4.587 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.409 6.409 14 N -0.359 5.359 15 C -0.030 4.030 16 C -0.062 4.062 17 N -0.362 5.362 18 C 0.421 3.579 19 O -0.460 6.460 20 N -0.379 5.379 21 C -0.065 4.065 22 C -0.032 4.032 23 O -0.298 6.298 24 C -0.030 4.030 25 C -0.026 4.026 26 C -0.007 4.007 27 C -0.025 4.025 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.151 -27.650 -4.475 28.678 hybrid contribution 0.505 1.056 0.032 1.171 sum -5.646 -26.594 -4.444 27.548 Atomic orbital electron populations 1.69960 1.06024 1.26454 1.51299 1.25019 0.94867 0.99271 0.95384 0.86542 0.80253 0.83748 0.77530 1.19681 1.21033 1.21040 1.21306 0.93238 0.90984 1.50013 0.92529 1.19130 0.93940 0.91478 0.97080 1.21463 0.98668 0.91478 1.01741 1.21873 0.98197 0.94115 1.03485 1.21337 0.90330 0.83333 0.74423 1.90675 1.17359 1.84013 1.48871 1.48193 1.06479 1.05879 1.75358 1.22251 0.81843 1.00715 0.98207 1.23271 0.95406 0.88187 0.99312 1.47239 1.07352 1.03921 1.77689 1.15783 0.81696 0.82939 0.77493 1.90905 1.54561 1.43547 1.56970 1.47158 1.08046 1.19075 1.63635 1.23196 0.94733 0.92723 0.95813 1.23148 0.97495 0.87907 0.94632 1.87974 1.33287 1.29286 1.79234 1.22998 0.93415 0.91388 0.95165 1.22177 0.97985 0.85334 0.97109 1.21933 0.79482 1.00662 0.98635 1.21920 0.95515 0.87188 0.97899 0.93116 0.96628 0.96616 0.92682 0.92688 0.89363 0.89376 0.90972 0.87689 0.90330 0.86251 0.89854 0.87178 0.92533 0.87358 0.92491 0.87542 0.88062 0.90811 0.91062 0.87850 0.87733 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.14 -2.13 4.04 -27.88 -0.11 -2.24 16 12 C 0.52 7.98 7.70 -10.99 -0.08 7.89 16 13 O -0.53 -10.36 15.39 5.56 0.09 -10.27 16 14 N -0.62 -7.28 2.94 -172.19 -0.51 -7.78 16 15 C 0.09 0.78 6.53 -3.36 -0.02 0.76 16 16 C 0.06 0.42 4.62 -3.36 -0.02 0.40 16 17 N -0.62 -5.73 2.92 -177.91 -0.52 -6.25 16 18 C 0.72 7.63 7.95 -86.93 -0.69 6.94 16 19 O -0.58 -8.25 15.43 5.28 0.08 -8.16 16 20 N -0.64 -5.05 2.96 -185.59 -0.55 -5.60 16 21 C 0.06 0.30 4.52 -3.32 -0.01 0.29 16 22 C 0.05 0.25 7.00 37.52 0.26 0.51 16 23 O -0.38 -2.76 10.74 -35.23 -0.38 -3.14 16 24 C 0.05 0.28 6.98 37.31 0.26 0.54 16 25 C 0.10 0.66 6.66 -3.53 -0.02 0.64 16 26 C 0.12 1.14 6.59 -3.58 -0.02 1.11 16 27 C 0.10 1.07 6.59 -3.57 -0.02 1.04 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 34 H 0.09 1.20 7.73 -51.93 -0.40 0.80 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.77 5.91 -51.93 -0.31 0.47 16 37 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 38 H 0.12 0.58 3.59 -61.93 -0.22 0.36 16 39 H 0.08 0.34 7.45 -51.93 -0.39 -0.04 16 40 H 0.11 0.50 4.71 -51.92 -0.24 0.25 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 0.79 7.16 -51.93 -0.37 0.42 16 46 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 1.06 7.02 -51.93 -0.36 0.70 16 49 H 0.10 1.26 6.99 -51.93 -0.36 0.90 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -36.58 387.67 -9.47 -46.06 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -8.09 Total: -4.12 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.16 Total: 2.59 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.84 Total: -45.53 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.21 Total: -21.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.58 -9.47 -46.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349785364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.173 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds